Spark gives InvalidProtocolBufferException when querying Hadoop - hadoop

Running this example in the Spark (0.9.1) shell on the Hadoop 2 namenode
scala> val file1 = sc.textFile("hdfs://testhadoopname1.myserver.com:9000/user/ubuntu/events/datepart=2014-04-11/2014-04-11-09-42.txt")
14/04/16 10:27:01 INFO storage.MemoryStore: ensureFreeSpace(74968) called with curMem=302142, maxMem=311387750
14/04/16 10:27:01 INFO storage.MemoryStore: Block broadcast_3 stored as values to memory (estimated size 73.2 KB, free 296.6 MB)
file1: org.apache.spark.rdd.RDD[String] = MappedRDD[7] at textFile at :12
scala> file1.count()
Why do I get this?
java.io.IOException: Failed on local exception: com.google.protobuf.InvalidProtocolBufferException: Protocol message contained an invalid tag (zero).; Host Details : local host is: "testhadoopname1.myserver.com/10.255.187.229"; destination host is: "testhadoopname1.myserver.com":9000;
at org.apache.hadoop.net.NetUtils.wrapException(NetUtils.java:764)
at org.apache.hadoop.ipc.Client.call(Client.java:1351)
at org.apache.hadoop.ipc.Client.call(Client.java:1300)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:206)
at com.sun.proxy.$Proxy14.getFileInfo(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:622)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:186)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
at com.sun.proxy.$Proxy14.getFileInfo(Unknown Source)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.getFileInfo(ClientNamenodeProtocolTranslatorPB.java:651)
at org.apache.hadoop.hdfs.DFSClient.getFileInfo(DFSClient.java:1679)
at org.apache.hadoop.hdfs.DistributedFileSystem$17.doCall(DistributedFileSystem.java:1106)
at org.apache.hadoop.hdfs.DistributedFileSystem$17.doCall(DistributedFileSystem.java:1102)
at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)
at org.apache.hadoop.hdfs.DistributedFileSystem.getFileStatus(DistributedFileSystem.java:1102)
at org.apache.hadoop.fs.FileSystem.globStatusInternal(FileSystem.java:1701)
at org.apache.hadoop.fs.FileSystem.globStatus(FileSystem.java:1647)
at org.apache.hadoop.mapred.FileInputFormat.listStatus(FileInputFormat.java:222)
at org.apache.hadoop.mapred.FileInputFormat.getSplits(FileInputFormat.java:270)
at org.apache.spark.rdd.HadoopRDD.getPartitions(HadoopRDD.scala:140)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:207)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:205)
at scala.Option.getOrElse(Option.scala:120)
at org.apache.spark.rdd.RDD.partitions(RDD.scala:205)
at org.apache.spark.rdd.MappedRDD.getPartitions(MappedRDD.scala:28)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:207)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:205)
at scala.Option.getOrElse(Option.scala:120)
at org.apache.spark.rdd.RDD.partitions(RDD.scala:205)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:898)
at org.apache.spark.rdd.RDD.count(RDD.scala:726)
at $iwC$$iwC$$iwC$$iwC.(:15)
at $iwC$$iwC$$iwC.(:20)
at $iwC$$iwC.(:22)
at $iwC.(:24)
at (:26)
at .(:30)
at .()
at .(:7)
at .()
at $print()
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:622)
at org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:772)
at org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1040)
at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:609)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:640)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:604)
at org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:793)
at org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:838)
at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:750)
at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:598)
at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:605)
at org.apache.spark.repl.SparkILoop.loop(SparkILoop.scala:608)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply$mcZ$sp(SparkILoop.scala:931)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply(SparkILoop.scala:881)
at org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply(SparkILoop.scala:881)
at scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135)
at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:881)
at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:973)
at org.apache.spark.repl.Main$.main(Main.scala:31)
at org.apache.spark.repl.Main.main(Main.scala)
Caused by: com.google.protobuf.InvalidProtocolBufferException: Protocol message contained an invalid tag (zero).
at com.google.protobuf.InvalidProtocolBufferException.invalidTag(InvalidProtocolBufferException.java:89)
at com.google.protobuf.CodedInputStream.readTag(CodedInputStream.java:108)
at org.apache.hadoop.ipc.protobuf.RpcHeaderProtos$RpcResponseHeaderProto.(RpcHeaderProtos.java:1398)
at org.apache.hadoop.ipc.protobuf.RpcHeaderProtos$RpcResponseHeaderProto.(RpcHeaderProtos.java:1362)
at org.apache.hadoop.ipc.protobuf.RpcHeaderProtos$RpcResponseHeaderProto$1.parsePartialFrom(RpcHeaderProtos.java:1492)
at org.apache.hadoop.ipc.protobuf.RpcHeaderProtos$RpcResponseHeaderProto$1.parsePartialFrom(RpcHeaderProtos.java:1487)
at com.google.protobuf.AbstractParser.parsePartialFrom(AbstractParser.java:200)
at com.google.protobuf.AbstractParser.parsePartialDelimitedFrom(AbstractParser.java:241)
at com.google.protobuf.AbstractParser.parseDelimitedFrom(AbstractParser.java:253)
at com.google.protobuf.AbstractParser.parseDelimitedFrom(AbstractParser.java:259)
at com.google.protobuf.AbstractParser.parseDelimitedFrom(AbstractParser.java:49)
at org.apache.hadoop.ipc.protobuf.RpcHeaderProtos$RpcResponseHeaderProto.parseDelimitedFrom(RpcHeaderProtos.java:2364)
at org.apache.hadoop.ipc.Client$Connection.receiveRpcResponse(Client.java:996)
at org.apache.hadoop.ipc.Client$Connection.run(Client.java:891)

Problem was that I was on a unqualified version of Hadoop (2.0.3-alpha build). I recreated the HDFS cluster on the latest Hadoop 2.3.0 with Spark 0.9.1 standalone clustermanager and ran the above example in the spark-shell..... works just as advertised.

Related

Cleaning staging area Error:Hadoop

I am running a map reduce code on hadoop and getting the following error:
INFO mapreduce.JobSubmitter: Cleaning up the staging area file:/home/dataflair/hdata/mapred/staging/intern124288574/.staging/job_local124288574_0001
Exception in thread "main" ExitCodeException exitCode=1: chmod: cannot access '/home/dataflair/hdata/mapred/staging/intern124288574/.staging/job_local124288574_0001': No such file or directory
at org.apache.hadoop.util.Shell.runCommand(Shell.java:998)
at org.apache.hadoop.util.Shell.run(Shell.java:884)
at org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:1216)
at org.apache.hadoop.util.Shell.execCommand(Shell.java:1310)
at org.apache.hadoop.util.Shell.execCommand(Shell.java:1292)
at org.apache.hadoop.fs.RawLocalFileSystem.setPermission(RawLocalFileSystem.java:767)
at org.apache.hadoop.fs.ChecksumFileSystem$1.apply(ChecksumFileSystem.java:506)
at org.apache.hadoop.fs.ChecksumFileSystem$FsOperation.run(ChecksumFileSystem.java:487)
at org.apache.hadoop.fs.ChecksumFileSystem.setPermission(ChecksumFileSystem.java:503)
at org.apache.hadoop.fs.FileSystem.mkdirs(FileSystem.java:720)
at org.apache.hadoop.mapreduce.JobResourceUploader.mkdirs(JobResourceUploader.java:648)
at org.apache.hadoop.mapreduce.JobResourceUploader.uploadResourcesInternal(JobResourceUploader.java:167)
at org.apache.hadoop.mapreduce.JobResourceUploader.uploadResources(JobResourceUploader.java:128)
at org.apache.hadoop.mapreduce.JobSubmitter.copyAndConfigureFiles(JobSubmitter.java:101)
at org.apache.hadoop.mapreduce.JobSubmitter.submitJobInternal(JobSubmitter.java:196)
at org.apache.hadoop.mapreduce.Job$11.run(Job.java:1570)
at org.apache.hadoop.mapreduce.Job$11.run(Job.java:1567)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1886)
at org.apache.hadoop.mapreduce.Job.submit(Job.java:1567)
at org.apache.hadoop.mapreduce.Job.waitForCompletion(Job.java:1588)
at wordCount.WordCount.main(WordCount.java:66)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.hadoop.util.RunJar.run(RunJar.java:239)
at org.apache.hadoop.util.RunJar.main(RunJar.java:153)

Error in Apache Spark while trying to read a file from hdfs (input path does not exist)

I am getting the following error when I try to read a file with Spark from hdfs:
scala> val textfile = sc.textFile("tmp/opendata/les-arbres.csv").collect()
17/10/09 19:02:31 INFO MemoryStore: Block broadcast_0 stored as values in memory (estimated size 341.4 KB, free 341.4 KB)
17/10/09 19:02:31 INFO MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 28.8 KB, free 370.2 KB)
17/10/09 19:02:31 INFO BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:45352 (size: 28.8 KB, free: 511.1 MB)
17/10/09 19:02:31 INFO SparkContext: Created broadcast 0 from textFile at <console>:27
17/10/09 19:02:31 INFO GPLNativeCodeLoader: Loaded native gpl library
17/10/09 19:02:31 INFO LzoCodec: Successfully loaded & initialized native-lzo library [hadoop-lzo rev 7a4b57bedce694048432dd5bf5b90a6c8ccdba80]
org.apache.hadoop.mapred.InvalidInputException: Input path does not exist: hdfs://sandbox.hortonworks.com:8020/user/root/tmp/opendata/les-arbres.csv
at org.apache.hadoop.mapred.FileInputFormat.singleThreadedListStatus(FileInputFormat.java:287)
at org.apache.hadoop.mapred.FileInputFormat.listStatus(FileInputFormat.java:229)
at org.apache.hadoop.mapred.FileInputFormat.getSplits(FileInputFormat.java:315)
at org.apache.spark.rdd.HadoopRDD.getPartitions(HadoopRDD.scala:199)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:242)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:240)
at scala.Option.getOrElse(Option.scala:120)
at org.apache.spark.rdd.RDD.partitions(RDD.scala:240)
at org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:242)
at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:240)
at scala.Option.getOrElse(Option.scala:120)
at org.apache.spark.rdd.RDD.partitions(RDD.scala:240)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1953)
at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:934)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:150)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:111)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:323)
at org.apache.spark.rdd.RDD.collect(RDD.scala:933)
at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:27)
at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:32)
at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:34)
at $iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:36)
at $iwC$$iwC$$iwC$$iwC.<init>(<console>:38)
at $iwC$$iwC$$iwC.<init>(<console>:40)
at $iwC$$iwC.<init>(<console>:42)
at $iwC.<init>(<console>:44)
at <init>(<console>:46)
at .<init>(<console>:50)
at .<clinit>(<console>)
at .<init>(<console>:7)
at .<clinit>(<console>)
at $print(<console>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065)
at org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1346)
at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819)
at org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:857)
at org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:902)
at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:814)
at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:657)
at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:665)
at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$loop(SparkILoop.scala:670)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply$mcZ$sp(SparkILoop.scala:997)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135)
at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$process(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1059)
at org.apache.spark.repl.Main$.main(Main.scala:31)
at org.apache.spark.repl.Main.main(Main.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:731)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:181)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:206)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:121)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
On the hdfs the file is existing:
[root#sandbox ~]# hdfs dfs -ls /tmp/opendata
Found 1 items
-rw-r--r-- 3 maria_dev hdfs 43404192 2017-10-09 08:30 /tmp/opendata/les-arbres.csv
I am running the Hortonworks sandbox on an Oracle VM. I am really new to Spark and I donĀ“t know why the error is there. Do I maybe need to configure Spark first, because it seems like Spark is connected to another HDFS?
As I see in your hdfs dfs -ls command, your tmp folder is not inside the /user/root/ folder. You just has to apply the following:
val textfile = sc.textFile("/tmp/opendata/les-arbres.csv").collect()
You must put a "/" character before the path where are you going to look for the file.

java.lang.RuntimeException: org.apache.hadoop.hive.ql.metadata.HiveException: org.apache.hadoop.ipc.RemoteException: java.io.IOException:

I have been facing a issue, when I'm trying to run a hive query to insert data into a Hive External Table. The process fails at reduce.
The diagnostic console messages are as follows:
Task with the most failures(4):
-----
Task ID:
task_201709171147_0059_r_000005
URL:
http://localhost:50030/taskdetails.jsp?jobid=job_201709171147_0059&tipid=task_201709171147_0059_r_000005
-----
Diagnostic Messages for this Task:
java.lang.RuntimeException: org.apache.hadoop.hive.ql.metadata.HiveException: org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /tmp/hive-gms/hive_2017-09-17_15-05-39_454_6420114297268603231/_task_tmp.-mr-10007/_tmp.000005_3 could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1920)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:783)
at sun.reflect.GeneratedMethodAccessor8.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
at org.apache.hadoop.hive.ql.exec.ExecReducer.reduce(ExecReducer.java:270)
at org.apache.hadoop.mapred.ReduceTask.runOldReducer(ReduceTask.java:522)
at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:421)
at org.apache.hadoop.mapred.Child$4.run(Child.java:255)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.mapred.Child.main(Child.java:249)
Caused by: org.apache.hadoop.hive.ql.metadata.HiveException: org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /tmp/hive-gms/hive_2017-09-17_15-05-39_454_6420114297268603231/_task_tmp.-mr-10007/_tmp.000005_3 could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1920)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:783)
at sun.reflect.GeneratedMethodAccessor8.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
at org.apache.hadoop.hive.ql.exec.FileSinkOperator.processOp(FileSinkOperator.java:620)
at org.apache.hadoop.hive.ql.exec.Operator.process(Operator.java:474)
at org.apache.hadoop.hive.ql.exec.Operator.forward(Operator.java:800)
at org.apache.hadoop.hive.ql.exec.GroupByOperator.forward(GroupByOperator.java:1061)
at org.apache.hadoop.hive.ql.exec.GroupByOperator.flush(GroupByOperator.java:1027)
at org.apache.hadoop.hive.ql.exec.GroupByOperator.processHashAggr(GroupByOperator.java:866)
at org.apache.hadoop.hive.ql.exec.GroupByOperator.processKey(GroupByOperator.java:751)
at org.apache.hadoop.hive.ql.exec.GroupByOperator.processOp(GroupByOperator.java:819)
at org.apache.hadoop.hive.ql.exec.Operator.process(Operator.java:474)
at org.apache.hadoop.hive.ql.exec.Operator.forward(Operator.java:800)
at org.apache.hadoop.hive.ql.exec.SelectOperator.processOp(SelectOperator.java:84)
at org.apache.hadoop.hive.ql.exec.Operator.process(Operator.java:474)
at org.apache.hadoop.hive.ql.exec.Operator.forward(Operator.java:800)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.createForwardJoinObject(CommonJoinOperator.java:392)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.genObject(CommonJoinOperator.java:715)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.genObject(CommonJoinOperator.java:697)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.genObject(CommonJoinOperator.java:697)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.genObject(CommonJoinOperator.java:697)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.genObject(CommonJoinOperator.java:697)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.genObject(CommonJoinOperator.java:697)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.checkAndGenObject(CommonJoinOperator.java:851)
at org.apache.hadoop.hive.ql.exec.JoinOperator.endGroup(JoinOperator.java:266)
at org.apache.hadoop.hive.ql.exec.ExecReducer.reduce(ExecReducer.java:200)
... 7 more
Caused by: org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /tmp/hive-gms/hive_2017-09-17_15-05-39_454_6420114297268603231/_task_tmp.-mr-10007/_tmp.000005_3 could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1920)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:783)
at sun.reflect.GeneratedMethodAccessor8.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
at org.apache.hadoop.ipc.Client.call(Client.java:1113)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:229)
at $Proxy2.addBlock(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:85)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:62)
at $Proxy2.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DFSClient.java:3720)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(DFSClient.java:3580)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2600(DFSClient.java:2783)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSClient.java:3023)
FAILED: Execution Error, return code 2 from org.apache.hadoop.hive.ql.exec.MapRedTask
MapReduce Jobs Launched:
Job 0: Map: 60 Reduce: 16 Cumulative CPU: 1488.73 sec HDFS Read: 15611147485 HDFS Write: 6697774964 SUCCESS
Job 1: Map: 41 Reduce: 11 Cumulative CPU: 2231.76 sec HDFS Read: 10853652873 HDFS Write: 8893984114 SUCCESS
Job 2: Map: 31 Reduce: 10 Cumulative CPU: 2426.38 sec HDFS Read: 9165529191 HDFS Write: 8927047843 SUCCESS
Job 3: Map: 33 Reduce: 10 Cumulative CPU: 2469.67 sec HDFS Read: 9198570523 HDFS Write: 9003617537 SUCCESS
Job 4: Map: 33 Reduce: 10 Cumulative CPU: 2519.58 sec HDFS Read: 9275146392 HDFS Write: 9032825573 SUCCESS
Job 5: Map: 33 Reduce: 10 Cumulative CPU: 2607.76 sec HDFS Read: 9304360085 HDFS Write: 9107047528 SUCCESS
Job 6: Map: 34 Reduce: 10 Cumulative CPU: 2624.55 sec HDFS Read: 9378577538 HDFS Write: 15269385865 FAIL
Total MapReduce CPU Time Spent: 0 days 4 hours 32 minutes 48 seconds 430 msec
The Log Messages from the Jobtracker web-ui are as follows:
java.lang.RuntimeException: org.apache.hadoop.hive.ql.metadata.HiveException: org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /tmp/hive-gms/hive_2017-09-17_15-05-39_454_6420114297268603231/_task_tmp.-mr-10007/_tmp.000004_0 could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1920)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:783)
at sun.reflect.GeneratedMethodAccessor8.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
at org.apache.hadoop.hive.ql.exec.ExecReducer.reduce(ExecReducer.java:270)
at org.apache.hadoop.mapred.ReduceTask.runOldReducer(ReduceTask.java:522)
at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:421)
at org.apache.hadoop.mapred.Child$4.run(Child.java:255)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.mapred.Child.main(Child.java:249)
Caused by: org.apache.hadoop.hive.ql.metadata.HiveException: org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /tmp/hive-gms/hive_2017-09-17_15-05-39_454_6420114297268603231/_task_tmp.-mr-10007/_tmp.000004_0 could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1920)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:783)
at sun.reflect.GeneratedMethodAccessor8.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
at org.apache.hadoop.hive.ql.exec.FileSinkOperator.processOp(FileSinkOperator.java:620)
at org.apache.hadoop.hive.ql.exec.Operator.process(Operator.java:474)
at org.apache.hadoop.hive.ql.exec.Operator.forward(Operator.java:800)
at org.apache.hadoop.hive.ql.exec.GroupByOperator.forward(GroupByOperator.java:1061)
at org.apache.hadoop.hive.ql.exec.GroupByOperator.processAggr(GroupByOperator.java:885)
at org.apache.hadoop.hive.ql.exec.GroupByOperator.processKey(GroupByOperator.java:753)
at org.apache.hadoop.hive.ql.exec.GroupByOperator.processOp(GroupByOperator.java:819)
at org.apache.hadoop.hive.ql.exec.Operator.process(Operator.java:474)
at org.apache.hadoop.hive.ql.exec.Operator.forward(Operator.java:800)
at org.apache.hadoop.hive.ql.exec.SelectOperator.processOp(SelectOperator.java:84)
at org.apache.hadoop.hive.ql.exec.Operator.process(Operator.java:474)
at org.apache.hadoop.hive.ql.exec.Operator.forward(Operator.java:800)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.createForwardJoinObject(CommonJoinOperator.java:392)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.genObject(CommonJoinOperator.java:715)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.genObject(CommonJoinOperator.java:697)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.genObject(CommonJoinOperator.java:697)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.genObject(CommonJoinOperator.java:697)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.genObject(CommonJoinOperator.java:697)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.genObject(CommonJoinOperator.java:697)
at org.apache.hadoop.hive.ql.exec.CommonJoinOperator.checkAndGenObject(CommonJoinOperator.java:851)
at org.apache.hadoop.hive.ql.exec.JoinOperator.endGroup(JoinOperator.java:266)
at org.apache.hadoop.hive.ql.exec.ExecReducer.reduce(ExecReducer.java:200)
... 7 more
Caused by: org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /tmp/hive-gms/hive_2017-09-17_15-05-39_454_6420114297268603231/_task_tmp.-mr-10007/_tmp.000004_0 could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1920)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:783)
at sun.reflect.GeneratedMethodAccessor8.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
at org.apache.hadoop.ipc.Client.call(Client.java:1113)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:229)
at $Proxy2.addBlock(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:85)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:62)
at $Proxy2.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DFSClient.java:3720)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(DFSClient.java:3580)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2600(DFSClient.java:2783)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSClient.java:3023)
Last 4KB
Last 8KB
All
attempt_201709171147_0059_r_000005_0 task_201709171147_0059_r_000005 gmdatal01-p1.ilcb.tcprod.local FAILED
I have set the dynamic partitions for hive:
set hive.exec.dynamic.partitions = true
set hive.exec.dynamic.partitions.mode = nonstrict
I have also formated the namenode and have tried it again but the error wouldn't go of.
The root cause of the issue seems space related. I was using a query that joins several large tables, as the data is skewed, Hive began to make big temporary table, for which there was not space on the disk. I reverted the configuration files to default and compressed intermediate results (configuration files) to get the result.

Why does DataFrame.saveAsTable("df") save table to different HDFS host?

I have configured Hive (1.13.1) with Spark (1.4.0) and I am able to access all the Databases and Table from hive and my warehouse directory is hdfs://192.168.1.17:8020/user/hive/warehouse
But when, I am trying to save a Dataframe through Spark-Shell (using master) into Hive using df.saveAsTable("df") function, I got this error.
15/07/03 14:48:59 INFO audit: ugi=user ip=unknown-ip-addr cmd=get_database: default
15/07/03 14:48:59 INFO HiveMetaStore: 0: get_table : db=default tbl=df
15/07/03 14:48:59 INFO audit: ugi=user ip=unknown-ip-addr cmd=get_table : db=default tbl=df
java.net.ConnectException: Call From bdiuser-Vostro-3800/127.0.1.1 to 192.168.1.19:8020 failed on connection exception: java.net.ConnectException: Connection refused; For more details see: http://wiki.apache.org/hadoop/ConnectionRefused
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.hadoop.net.NetUtils.wrapWithMessage(NetUtils.java:783)
at org.apache.hadoop.net.NetUtils.wrapException(NetUtils.java:730)
at org.apache.hadoop.ipc.Client.call(Client.java:1414)
at org.apache.hadoop.ipc.Client.call(Client.java:1363)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:206)
at com.sun.proxy.$Proxy14.getFileInfo(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:190)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:103)
at com.sun.proxy.$Proxy14.getFileInfo(Unknown Source)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.getFileInfo(ClientNamenodeProtocolTranslatorPB.java:699)
at org.apache.hadoop.hdfs.DFSClient.getFileInfo(DFSClient.java:1762)
at org.apache.hadoop.hdfs.DistributedFileSystem$17.doCall(DistributedFileSystem.java:1124)
at org.apache.hadoop.hdfs.DistributedFileSystem$17.doCall(DistributedFileSystem.java:1120)
at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)
at org.apache.hadoop.hdfs.DistributedFileSystem.getFileStatus(DistributedFileSystem.java:1120)
at org.apache.hadoop.fs.FileSystem.exists(FileSystem.java:1398)
at org.apache.spark.sql.sources.InsertIntoHadoopFsRelation.run(commands.scala:78)
at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult$lzycompute(commands.scala:57)
at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult(commands.scala:57)
at org.apache.spark.sql.execution.ExecutedCommand.doExecute(commands.scala:68)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:88)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:88)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:148)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:87)
at org.apache.spark.sql.SQLContext$QueryExecution.toRdd$lzycompute(SQLContext.scala:939)
at org.apache.spark.sql.SQLContext$QueryExecution.toRdd(SQLContext.scala:939)
at org.apache.spark.sql.sources.ResolvedDataSource$.apply(ddl.scala:332)
at org.apache.spark.sql.hive.execution.CreateMetastoreDataSourceAsSelect.run(commands.scala:239)
at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult$lzycompute(commands.scala:57)
at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult(commands.scala:57)
at org.apache.spark.sql.execution.ExecutedCommand.doExecute(commands.scala:68)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:88)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:88)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:148)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:87)
at org.apache.spark.sql.SQLContext$QueryExecution.toRdd$lzycompute(SQLContext.scala:939)
at org.apache.spark.sql.SQLContext$QueryExecution.toRdd(SQLContext.scala:939)
at org.apache.spark.sql.DataFrameWriter.saveAsTable(DataFrameWriter.scala:211)
at org.apache.spark.sql.DataFrame.saveAsTable(DataFrame.scala:1517)
at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:22)
at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:27)
at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:29)
at $iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:31)
at $iwC$$iwC$$iwC$$iwC.<init>(<console>:33)
at $iwC$$iwC$$iwC.<init>(<console>:35)
at $iwC$$iwC.<init>(<console>:37)
at $iwC.<init>(<console>:39)
at <init>(<console>:41)
at .<init>(<console>:45)
at .<clinit>(<console>)
at .<init>(<console>:7)
at .<clinit>(<console>)
at $print(<console>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065)
at org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1338)
at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819)
at org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:857)
at org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:902)
at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:814)
at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:657)
at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:665)
at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$loop(SparkILoop.scala:670)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply$mcZ$sp(SparkILoop.scala:997)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135)
at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$process(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1059)
at org.apache.spark.repl.Main$.main(Main.scala:31)
at org.apache.spark.repl.Main.main(Main.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:664)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:169)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:192)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:111)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.net.ConnectException: Connection refused
at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:744)
at org.apache.hadoop.net.SocketIOWithTimeout.connect(SocketIOWithTimeout.java:206)
at org.apache.hadoop.net.NetUtils.connect(NetUtils.java:529)
at org.apache.hadoop.net.NetUtils.connect(NetUtils.java:493)
at org.apache.hadoop.ipc.Client$Connection.setupConnection(Client.java:604)
at org.apache.hadoop.ipc.Client$Connection.setupIOstreams(Client.java:699)
at org.apache.hadoop.ipc.Client$Connection.access$2800(Client.java:367)
at org.apache.hadoop.ipc.Client.getConnection(Client.java:1462)
at org.apache.hadoop.ipc.Client.call(Client.java:1381)
... 86 more
When, I go through this error, I found that program tried different host for HDFS connection to save table.
And i also tried with different worker's spark-shell, I got same error.
Please find the example below:
val options = Map("path" -> hiveTablePath)
result.write.format("orc").partitionBy("partitiondate").options(options).mode(SaveMode.Append).saveAsTable(hiveTable)
I have explained this a little bit more in my blog.
With saveAsTable the default location that Spark saves to is controlled by the HiveMetastore (based on the docs). Another option would be to use saveAsParquetFile and specify the path and then later register that path with your hive metastore OR use the new DataFrameWriter interface and specify the path option write.format(source).mode(mode).options(options).saveAsTable(tableName).
You can write spark dataframe to the existing spark table.
Please find the example below:
df.write.mode("overwrite").saveAsTable("database.tableName")

error while copying the files from local file system to HDFS in Hadoop

I am using hadoop for processing the files, presently i am trying to copy the files from local file system to HDFS using the command below
hadoop fs -put d:\hadoop\weblogs /so/data/weblogs
Got the error as below
c:\Hadoop\hadoop-1.1.0-SNAPSHOT>hadoop fs -put d:\hadoop\weblogs /so/data/weblog
s
12/12/03 19:05:16 WARN hdfs.DFSClient: DataStreamer Exception: org.apache.hadoop
.ipc.RemoteException: java.io.IOException: File /so/data/weblogs/weblogs/u_ex121
10418.log could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBloc
k(FSNamesystem.java:1557)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.jav
a:695)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.
java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces
sorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:563)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1393)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1389)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInforma
tion.java:1135)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1387)
at org.apache.hadoop.ipc.Client.call(Client.java:1070)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:225)
at $Proxy1.addBlock(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.
java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces
sorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryI
nvocationHandler.java:82)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocat
ionHandler.java:59)
at $Proxy1.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock
(DFSClient.java:3518)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStrea
m(DFSClient.java:3381)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2500(DFSClien
t.java:2593)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFS
Client.java:2833)
12/12/03 19:05:16 WARN hdfs.DFSClient: Error Recovery for block null bad datanod
e[0] nodes == null
12/12/03 19:05:16 WARN hdfs.DFSClient: Could not get block locations. Source fil
e "/so/data/weblogs/weblogs/u_ex12110418.log" - Aborting...
put: java.io.IOException: File /so/data/weblogs/weblogs/u_ex12110418.log could o
nly be replicated to 0 nodes, instead of 1
12/12/03 19:05:16 ERROR hdfs.DFSClient: Exception closing file /so/data/weblogs/
weblogs/u_ex12110418.log : org.apache.hadoop.ipc.RemoteException: java.io.IOExce
ption: File /so/data/weblogs/weblogs/u_ex12110418.log could only be replicated t
o 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBloc
k(FSNamesystem.java:1557)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.jav
a:695)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.
java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces
sorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:563)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1393)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1389)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInforma
tion.java:1135)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1387)
org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /so/data/weblog
s/weblogs/u_ex12110418.log could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBloc
k(FSNamesystem.java:1557)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.jav
a:695)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.
java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces
sorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:563)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1393)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1389)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInforma
tion.java:1135)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1387)
at org.apache.hadoop.ipc.Client.call(Client.java:1070)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:225)
at $Proxy1.addBlock(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.
java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces
sorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryI
nvocationHandler.java:82)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocat
ionHandler.java:59)
at $Proxy1.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock
(DFSClient.java:3518)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStrea
m(DFSClient.java:3381)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2500(DFSClien
t.java:2593)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFS
Client.java:2833)
c:\Hadoop\hadoop-1.1.0-SNAPSHOT>
Can anyone please let me know, whats wrong in the above command, and what need to be done in order to avoid this error ?
One of:
The remote system with HDFS (as specified in the config) hasn't been started
There is a network problem preventing connectivity with the remote system
You ran out of disk space on the HDFS file system
You have the wrong remote system configured.
DataNode of your Hadoop cluster is not running. Check it using jps command.

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