I have problems with install capybara-webkit
my qmake is
QMake version 2.01a
Using Qt version 4.8.4 in /usr/lib/x86_64-linux-gnu
qtchooser -list-versions returns
default
qt4
qt5-x86_64-linux-gnu
5
qt5
I don't know how to left only qt4, maybe this is reason of those errors:
Gem::Ext::BuildError: ERROR: Failed to build gem native extension.
/home/adam/.rvm/rubies/ruby-2.1.0/bin/ruby extconf.rb
cd src/ && /usr/bin/qmake /home/adam/.rvm/gems/ruby-2.1.0/gems/capybara-webkit-1.2.0/src/webkit_server.pro -spec /usr/share/qt4/mkspecs/linux-g++ -o Makefile.webkit_server
cd src/ && make -f Makefile.webkit_server
make[1]: Wejście do katalogu `/home/adam/.rvm/gems/ruby-2.1.0/gems/capybara-webkit-1.2.0/src'
g++ -pipe -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtWebKit -I/usr/include/qt4 -Ibuild -x c++-header -c stable.h -o build/webkit_server.gch/c++
stable.h:23:23: fatal error: QWebElement: Nie ma takiego pliku ani katalogu
#include <QWebElement>
^
compilation terminated.
make[1]: *** [build/webkit_server.gch/c++] Błąd 1
make[1]: Opuszczenie katalogu `/home/adam/.rvm/gems/ruby-2.1.0/gems/capybara-webkit-1.2.0/src'
make: *** [sub-src-webkit_server-pro-make_default-ordered] Błąd 2
Command 'make' failed
make "DESTDIR=" clean
cd src/ && make -f Makefile.webkit_server clean
make[1]: Wejście do katalogu `/home/adam/.rvm/gems/ruby-2.1.0/gems/capybara-webkit-1.2.0/src'
rm -f build/moc_GoForward.cpp build/moc_GoBack.cpp build/moc_WindowMaximize.cpp build/moc_WindowSize.cpp build/moc_WindowCommand.cpp build/moc_WindowOpen.cpp build/moc_WindowClose.cpp build/moc_Version.cpp build/moc_EnableLogging.cpp build/moc_Authenticate.cpp build/moc_SetConfirmAction.cpp build/moc_SetPromptAction.cpp build/moc_SetPromptText.cpp build/moc_ClearPromptText.cpp build/moc_JavascriptAlertMessages.cpp build/moc_JavascriptConfirmMessages.cpp build/moc_JavascriptPromptMessages.cpp build/moc_IgnoreSslErrors.cpp build/moc_WindowResize.cpp build/moc_CurrentUrl.cpp build/moc_ConsoleMessages.cpp build/moc_WebPage.cpp build/moc_Server.cpp build/moc_Connection.cpp build/moc_Command.cpp build/moc_SocketCommand.cpp build/moc_Visit.cpp build/moc_Reset.cpp build/moc_Node.cpp build/moc_JavascriptInvocation.cpp build/moc_Evaluate.cpp build/moc_Execute.cpp build/moc_FrameFocus.cpp build/moc_Response.cpp build/moc_NetworkAccessManager.cpp build/moc_NetworkCookieJar.cpp build/moc_Header.cpp build/moc_Render.cpp build/moc_Body.cpp build/moc_Status.cpp build/moc_Headers.cpp build/moc_UnsupportedContentHandler.cpp build/moc_SetCookie.cpp build/moc_ClearCookies.cpp build/moc_GetCookies.cpp build/moc_CommandParser.cpp build/moc_CommandFactory.cpp build/moc_SetProxy.cpp build/moc_NullCommand.cpp build/moc_PageLoadingCommand.cpp build/moc_SetSkipImageLoading.cpp build/moc_WebPageManager.cpp build/moc_WindowFocus.cpp build/moc_GetWindowHandles.cpp build/moc_GetWindowHandle.cpp build/moc_GetTimeout.cpp build/moc_SetTimeout.cpp build/moc_TimeoutCommand.cpp build/moc_SetUrlBlacklist.cpp build/moc_NoOpReply.cpp build/moc_JsonSerializer.cpp build/moc_ErrorMessage.cpp build/moc_Title.cpp build/moc_FindCss.cpp build/moc_JavascriptCommand.cpp build/moc_FindXpath.cpp build/moc_NetworkReplyProxy.cpp build/moc_StdinNotifier.cpp
rm -f qrc_webkit_server.cpp
rm -f build/GoForward.o build/GoBack.o build/WindowMaximize.o build/WindowSize.o build/WindowCommand.o build/WindowOpen.o build/WindowClose.o build/Version.o build/EnableLogging.o build/Authenticate.o build/SetConfirmAction.o build/SetPromptAction.o build/SetPromptText.o build/ClearPromptText.o build/JavascriptAlertMessages.o build/JavascriptConfirmMessages.o build/JavascriptPromptMessages.o build/IgnoreSslErrors.o build/WindowResize.o build/CurrentUrl.o build/ConsoleMessages.o build/main.o build/WebPage.o build/Server.o build/Connection.o build/Command.o build/SocketCommand.o build/Visit.o build/Reset.o build/Node.o build/JavascriptInvocation.o build/Evaluate.o build/Execute.o build/FrameFocus.o build/Response.o build/NetworkAccessManager.o build/NetworkCookieJar.o build/Header.o build/Render.o build/body.o build/Status.o build/Headers.o build/UnsupportedContentHandler.o build/SetCookie.o build/ClearCookies.o build/GetCookies.o build/CommandParser.o build/CommandFactory.o build/SetProxy.o build/NullCommand.o build/PageLoadingCommand.o build/SetTimeout.o build/GetTimeout.o build/SetSkipImageLoading.o build/WebPageManager.o build/WindowFocus.o build/GetWindowHandles.o build/GetWindowHandle.o build/TimeoutCommand.o build/SetUrlBlacklist.o build/NoOpReply.o build/JsonSerializer.o build/InvocationResult.o build/ErrorMessage.o build/Title.o build/FindCss.o build/JavascriptCommand.o build/FindXpath.o build/NetworkReplyProxy.o build/IgnoreDebugOutput.o build/StdinNotifier.o build/moc_GoForward.o build/moc_GoBack.o build/moc_WindowMaximize.o build/moc_WindowSize.o build/moc_WindowCommand.o build/moc_WindowOpen.o build/moc_WindowClose.o build/moc_Version.o build/moc_EnableLogging.o build/moc_Authenticate.o build/moc_SetConfirmAction.o build/moc_SetPromptAction.o build/moc_SetPromptText.o build/moc_ClearPromptText.o build/moc_JavascriptAlertMessages.o build/moc_JavascriptConfirmMessages.o build/moc_JavascriptPromptMessages.o build/moc_IgnoreSslErrors.o build/moc_WindowResize.o build/moc_CurrentUrl.o build/moc_ConsoleMessages.o build/moc_WebPage.o build/moc_Server.o build/moc_Connection.o build/moc_Command.o build/moc_SocketCommand.o build/moc_Visit.o build/moc_Reset.o build/moc_Node.o build/moc_JavascriptInvocation.o build/moc_Evaluate.o build/moc_Execute.o build/moc_FrameFocus.o build/moc_Response.o build/moc_NetworkAccessManager.o build/moc_NetworkCookieJar.o build/moc_Header.o build/moc_Render.o build/moc_Body.o build/moc_Status.o build/moc_Headers.o build/moc_UnsupportedContentHandler.o build/moc_SetCookie.o build/moc_ClearCookies.o build/moc_GetCookies.o build/moc_CommandParser.o build/moc_CommandFactory.o build/moc_SetProxy.o build/moc_NullCommand.o build/moc_PageLoadingCommand.o build/moc_SetSkipImageLoading.o build/moc_WebPageManager.o build/moc_WindowFocus.o build/moc_GetWindowHandles.o build/moc_GetWindowHandle.o build/moc_GetTimeout.o build/moc_SetTimeout.o build/moc_TimeoutCommand.o build/moc_SetUrlBlacklist.o build/moc_NoOpReply.o build/moc_JsonSerializer.o build/moc_ErrorMessage.o build/moc_Title.o build/moc_FindCss.o build/moc_JavascriptCommand.o build/moc_FindXpath.o build/moc_NetworkReplyProxy.o build/moc_StdinNotifier.o build/qrc_webkit_server.o
rm -f build/webkit_server.gch/c build/webkit_server.gch/c++
rm -f *~ core *.core
make[1]: Opuszczenie katalogu `/home/adam/.rvm/gems/ruby-2.1.0/gems/capybara-webkit-1.2.0/src'
make "DESTDIR="
cd src/ && make -f Makefile.webkit_server
make[1]: Wejście do katalogu `/home/adam/.rvm/gems/ruby-2.1.0/gems/capybara-webkit-1.2.0/src'
g++ -pipe -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtWebKit -I/usr/include/qt4 -Ibuild -x c++-header -c stable.h -o build/webkit_server.gch/c++
stable.h:23:23: fatal error: QWebElement: Nie ma takiego pliku ani katalogu
#include <QWebElement>
^
compilation terminated.
make[1]: *** [build/webkit_server.gch/c++] Błąd 1
make[1]: Opuszczenie katalogu `/home/adam/.rvm/gems/ruby-2.1.0/gems/capybara-webkit-1.2.0/src'
make: *** [sub-src-webkit_server-pro-make_default-ordered] Błąd 2
make failed, exit code 2
Gem files will remain installed in /home/adam/.rvm/gems/ruby-2.1.0/gems/capybara-webkit-1.2.0 for inspection.
Results logged to /home/adam/.rvm/gems/ruby-2.1.0/extensions/x86_64-linux/2.1.0/capybara-webkit-1.2.0/gem_make.out
How can I reapair it?
On CentOS 7
sudo yum -y install epel-release
sudo yum -y install qtwebkit-devel
Related
OS - RedHat 8.5, kernel 4.18.0-348.20.1.el8_5.x86_64, gcc-8.5.0
I have installed kernel-devel and kernel-headers, and tried to build a very simple kernel module (just a pair of printk()).
Makefile:
obj-m += test_mod.o
MSRC ?= $(PWD)
KDIR ?= /lib/modules/`uname -r`/build/
all:
make -C $(KDIR) M=$(MSRC) modules
clean:
make -C $(KDIR) M=$(MSRC) clean
However I'm getting error:
% make V=1
make -C /lib/modules/`uname -r`/build M= modules
make[1]: Entering directory '/usr/src/kernels/4.18.0-348.20.1.el8_5.x86_64'
arch/x86/Makefile:249: *** You are building kernel with non-retpoline compiler, please update your compiler.. Stop.
make[1]: Leaving directory '/usr/src/kernels/4.18.0-348.20.1.el8_5.x86_64'
make: *** [Makefile:4: all] Error 2
%
Do I have to upgrade to a new compiler, if so which compiler version is needed? man gcc on my machine (RHEL8.5) says that -mindirect-branch= option is supported, and I believe this is the one enabling retpoline.
Should it be possible to disable retpoline support in the kernel? (however I would not like to rebuild the kernel if possible).
Thanks!
EDIT
I disabled retpoline as suggested by 0andriy via grub configuration file, (cat /proc/cmdline shows spectre_v2=off):
% grub2-editenv - set kernelopts=root=/dev/mapper/rhel_ps3cat5505k1-root ro crashkernel=auto resume=/dev/mapper/rhel_ps3cat5505k1-swap rd.lvm.lv=rhel_ps3cat5505k1/root rd.lvm.lv=rhel_ps3cat5505k1/swap rhgb quiet spectre_v2=off
% reboot
However the build still fails:
% make V=1
make -C /lib/modules/`uname -r`/build/ M=/home/mrv/tmp modules
make[1]: Entering directory '/usr/src/kernels/4.18.0-348.20.1.el8_5.x86_64'
test -e include/generated/autoconf.h -a -e include/config/auto.conf || ( \
echo >&2; \
echo >&2 " ERROR: Kernel configuration is invalid."; \
echo >&2 " include/generated/autoconf.h or include/config/auto.conf are missing.";\
echo >&2 " Run 'make oldconfig && make prepare' on kernel src to fix it."; \
echo >&2 ; \
/bin/false)
mkdir -p /home/mrv/tmp/.tmp_versions ; rm -f /home/mrv/tmp/.tmp_versions/*
make -f ./scripts/Makefile.build obj=/home/mrv/tmp
(cat /dev/null; echo kernel//home/mrv/tmp/test_mod.ko;) > /home/mrv/tmp/modules.order
gcc -Wp,-MD,/home/mrv/tmp/.test_mod.o.d -nostdinc -isystem /usr/lib/gcc/x86_64-redhat-linux/8/include -I./arch/x86/include -I./arch/x86/include/generated -I./include/drm-backport -I./include -I./arch/x86/include/uapi -I./arch/x86/include/generated/uapi -I./include/uapi -I./include/generated/uapi -include ./include/linux/kconfig.h -include ./include/linux/compiler_types.h -D__KERNEL__ -Wall -Wundef -Wstrict-prototypes -Wno-trigraphs -fno-strict-aliasing -fno-common -fshort-wchar -Werror-implicit-function-declaration -Wno-format-security -std=gnu89 -fno-PIE -DCC_HAVE_ASM_GOTO -mno-sse -mno-mmx -mno-sse2 -mno-3dnow -mno-avx -m64 -falign-jumps=1 -falign-loops=1 -mno-80387 -mno-fp-ret-in-387 -mpreferred-stack-boundary=3 -mskip-rax-setup -mtune=generic -mno-red-zone -mcmodel=kernel -funit-at-a-time -DCONFIG_AS_CFI=1 -DCONFIG_AS_CFI_SIGNAL_FRAME=1 -DCONFIG_AS_CFI_SECTIONS=1 -DCONFIG_AS_FXSAVEQ=1 -DCONFIG_AS_SSSE3=1 -DCONFIG_AS_CRC32=1 -DCONFIG_AS_AVX=1 -DCONFIG_AS_AVX2=1 -DCONFIG_AS_AVX512=1 -DCONFIG_AS_SHA1_NI=1 -DCONFIG_AS_SHA256_NI=1 -DCONFIG_TPAUSE=1 -pipe -Wno-sign-compare -fno-asynchronous-unwind-tables -mindirect-branch=thunk-extern -mindirect-branch-register -fno-jump-tables -fno-delete-null-pointer-checks -Wno-frame-address -Wno-format-truncation -Wno-format-overflow -Wno-int-in-bool-context -O2 --param=allow-store-data-races=0 -Wframe-larger-than=2048 -fstack-protector-strong -Wno-unused-but-set-variable -Wno-unused-const-variable -g -gdwarf-4 -pg -mrecord-mcount -mfentry -DCC_USING_FENTRY -fno-inline-functions-called-once -Wdeclaration-after-statement -Wno-pointer-sign -Wno-stringop-truncation -fno-strict-overflow -fno-merge-all-constants -fmerge-constants -fno-stack-check -fconserve-stack -Werror=implicit-int -Werror=strict-prototypes -Werror=date-time -Werror=incompatible-pointer-types -Werror=designated-init -fmacro-prefix-map=./= -Wno-packed-not-aligned -DMODULE -DKBUILD_BASENAME='"test_mod"' -DKBUILD_MODNAME='"test_mod"' -c -o /home/mrv/tmp/.tmp_test_mod.o /home/mrv/tmp/test_mod.c
In file included from ./include/linux/module.h:18,
from /home/mrv/tmp/test_mod.c:1:
./include/linux/moduleparam.h:22:1: error: expected ‘,’ or ‘;’ before ‘static’
static const char __UNIQUE_ID(name)[] \
^~~~~~
./include/linux/module.h:158:32: note: in expansion of macro ‘__MODULE_INFO’
#define MODULE_INFO(tag, info) __MODULE_INFO(tag, tag, info)
^~~~~~~~~~~~~
./include/linux/module.h:196:34: note: in expansion of macro ‘MODULE_INFO’
#define MODULE_LICENSE(_license) MODULE_INFO(license, _license)
^~~~~~~~~~~
/home/mrv/tmp/test_mod.c:19:1: note: in expansion of macro ‘MODULE_LICENSE’
MODULE_LICENSE("GPL")
^~~~~~~~~~~~~~
make[2]: *** [scripts/Makefile.build:322: /home/mrv/tmp/test_mod.o] Error 1
make[1]: *** [Makefile:1571: _module_/home/mrv/tmp] Error 2
make[1]: Leaving directory '/usr/src/kernels/4.18.0-348.20.1.el8_5.x86_64'
make: *** [Makefile:6: all] Error 2
%
So, running 'make oldconfig && make prepare' in kernel sources directory /usr/src/kernels/4.18.0-348.20.1.el8_5.x86_64 results in failure to locate tools/build/Build.include.
Not sure if RedHat allows to build kernel modules in RHEL8 at all.
EDIT2
Simple kernel module:
#include <linux/module.h>
#include <linux/kernel.h>
static __init int test_init(void)
{
printk("Init module\n");
return 0;
}
static __exit void test_exit(void)
{
printk("Cleanup module\n");
}
module_init(test_init)
module_exit(test_exit)
MODULE_DESCRIPTION("Test module");
MODULE_LICENSE("GPL");
I am trying to compile vasp 6.2.1 in my ubuntu 19.10 on VirtualBox. I have intel openApi (which has ifortran compiler) and fftw3 installed. I am trying to compile the serial version using ifort. But it's giving me an error as follows.
if [ ! -d build ] ; then mkdir build ; fi
if [ ! -d build/std ] ; then mkdir build/std ; fi
cp src/makefile src/.objects src/makedeps.awk makefile.include build/std
make -C build/std VERSION=std cleandependencies -j1
make[1]: Entering directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std'
rm -f .depend
make[1]: Leaving directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std'
make -C build/std VERSION=std all
make[1]: Entering directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std'
rsync -ru ../../src/lib .
cp makefile.include lib
make -C lib -j1
make[2]: Entering directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std/lib'
make libdmy.a
make[3]: Entering directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std/lib'
make[3]: 'libdmy.a' is up to date.
make[3]: Leaving directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std/lib'
make[2]: Leaving directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std/lib'
rsync -ru ../../src/parser .
cp makefile.include parser
make -C parser -j1
make[2]: Entering directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std/parser'
make libparser.a
make[3]: Entering directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std/parser'
make[3]: 'libparser.a' is up to date.
make[3]: Leaving directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std/parser'
make[2]: Leaving directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std/parser'
rsync -u ../../src/*.F ../../src/*.inc .
rm -f vasp ; make vasp ; cp vasp ../../bin/vasp_std
make[2]: Entering directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std'
mpiifort -qmkl=cluster -lstdc++ -o vasp c2f_interface.o nccl2for.o simd.o base.o profiling.o string.o tutor.o version.o vhdf5_base.o incar_reader.o reader_base.o openmp.o openacc_struct.o mpi.o mpi_shmem.o mathtools.o hamil_struct.o radial_struct.o pseudo_struct.o mgrid_struct.o wave_struct.o nl_struct.o mkpoints_struct.o poscar_struct.o afqmc_struct.o phonon_struct.o fock_glb.o chi_glb.o smart_allocate.o xml.o extpot_glb.o constant.o vdwforcefield_glb.o jacobi.o main_mpi.o openacc.o scala.o asa.o lattice.o poscar.o ini.o mgrid.o setex_struct.o xclib.o vdw_nl.o xclib_grad.o setex.o radial.o pseudo.o gridq.o ebs.o symlib.o mkpoints.o random.o wave.o wave_mpi.o wave_high.o bext.o spinsym.o symmetry.o lattlib.o nonl.o nonlr.o nonl_high.o dfast.o choleski2.o mix.o hamil.o xcgrad.o xcspin.o potex1.o potex2.o constrmag.o cl_shift.o relativistic.o LDApU.o paw_base.o metagga.o egrad.o pawsym.o pawfock.o pawlhf.o diis.o rhfatm.o hyperfine.o fock_ace.o paw.o mkpoints_full.o charge.o Lebedev-Laikov.o stockholder.o dipol.o solvation.o scpc.o pot.o tet.o dos.o elf.o hamil_rot.o chain.o dyna.o fileio.o vhdf5.o sphpro.o us.o core_rel.o aedens.o wavpre.o wavpre_noio.o broyden.o dynbr.o reader.o writer.o xml_writer.o brent.o stufak.o opergrid.o stepver.o chgloc.o fast_aug.o fock_multipole.o fock.o fock_dbl.o fock_frc.o mkpoints_change.o subrot_cluster.o sym_grad.o mymath.o npt_dynamics.o subdftd3.o subdftd4.o internals.o dynconstr.o dimer_heyden.o dvvtrajectory.o vdwforcefield.o nmr.o pead.o k-proj.o subrot.o subrot_scf.o paircorrection.o rpa_force.o ml_interface.o force.o pwlhf.o gw_model.o optreal.o steep.o rmm-diis.o davidson.o david_inner.o root_find.o lcao_bare.o locproj.o electron_common.o electron.o rot.o electron_all.o shm.o pardens.o optics.o constr_cell_relax.o stm.o finite_diff.o elpol.o hamil_lr.o rmm-diis_lr.o subrot_lr.o lr_helper.o hamil_lrf.o elinear_response.o ilinear_response.o linear_optics.o setlocalpp.o wannier.o electron_OEP.o electron_lhf.o twoelectron4o.o gauss_quad.o m_unirnk.o minimax_ini.o minimax_dependence.o minimax_functions1D.o minimax_functions2D.o minimax_struct.o minimax_varpro.o minimax.o mlwf.o ratpol.o pade_fit.o screened_2e.o wave_cacher.o crpa.o chi_base.o wpot.o local_field.o ump2.o ump2kpar.o fcidump.o ump2no.o bse_te.o bse.o time_propagation.o acfdt.o afqmc.o rpax.o chi.o acfdt_GG.o dmft.o GG_base.o greens_orbital.o lt_mp2.o rnd_orb_mp2.o greens_real_space.o chi_GG.o chi_super.o sydmat.o rmm-diis_mlr.o linear_response_NMR.o wannier_interpol.o wave_interpolate.o linear_response.o auger.o dmatrix.o phonon.o wannier_mats.o elphon.o core_con_mat.o embed.o extpot.o fft3dfurth.o fft3dlib.o main.o -Llib -ldmy -Lparser -lparser -Lparser -lparser -lstdc++
ipo: warning #11021: unresolved fftext_mu_
Referenced in /tmp/ipo_ifortQlEAwA.o
ipo: warning #11021: unresolved fftext_useinv_mu_
Referenced in /tmp/ipo_ifortQlEAwA.o
ipo: warning #11021: unresolved fftwav_mu_
Referenced in /tmp/ipo_ifortQlEAwA.o
ipo: warning #11021: unresolved fftwav_useinv_mu_
Referenced in /tmp/ipo_ifortQlEAwA.o
ld: /tmp/ipo_ifortQlEAwA2.o: in function `wave_high_mp_fftext_wa_':
ipo_out2.f:(.text.hot00012+0x2d442): undefined reference to `fftext_useinv_mu_'
ld: ipo_out2.f:(.text.hot00012+0x2d597): undefined reference to `fftext_mu_'
ld: /tmp/ipo_ifortQlEAwA2.o: in function `wave_high_mp_fftwav_wa_':
ipo_out2.f:(.text.hot00012+0x2d865): undefined reference to `fftwav_useinv_mu_'
ld: ipo_out2.f:(.text.hot00012+0x2d99f): undefined reference to `fftwav_mu_'
make[2]: *** [makefile:149: vasp] Error 1
make[2]: Leaving directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std'
cp: cannot stat 'vasp': No such file or directory
make[1]: *** [makefile:146: all] Error 1
make[1]: Leaving directory '/home/mdazharul/vasp/vasp6.2.1/vasp6.2.1/vasp6.2.1/vasp.6.2.1/build/std'
make: *** [makefile:17: std] Error 2
I am Also including the makefile.include.
>
# Precompiler options
CPP_OPTIONS= -DHOST=\"LinuxIFC\"\
-DCACHE_SIZE=16000 \
-Davoidalloc \
-Duse_bse_te \
-Dtbdyn \
-Dfock_dblbuf
CPP = fpp -f_com=no -free -w0 $*$(FUFFIX) $*$(SUFFIX) $(CPP_OPTIONS)
FC = mpiifort
FCL = mpiifort -qmkl=cluster -lstdc++
FREE = -free -names lowercase
FFLAGS = -assume byterecl -w -xHOST
OFLAG = -O2
OFLAG_IN = $(OFLAG)
DEBUG = -O0
MKL_PATH = $(MKLROOT)/lib/intel64
BLAS =
LAPACK =
BLACS =
SCALAPACK =
OBJECTS = fft3dfurth.o fft3dlib.o
INCS =-I$(MKLROOT)/include/fftw
LLIBS = $(SCALAPACK) $(LAPACK) $(BLAS)
OBJECTS_O1 += fft3dfurth.o fftw3d.o fftmpi.o fftmpiw.o
OBJECTS_O2 += fft3dlib.o
# For what used to be vasp.5.lib
CPP_LIB = $(CPP)
FC_LIB = $(FC)
CC_LIB = icc
CFLAGS_LIB = -O
FFLAGS_LIB = -O1
FREE_LIB = $(FREE)
OBJECTS_LIB= linpack_double.o
# For the parser library
CXX_PARS = icpc
LLIBS += -Lparser -lparser -lstdc++
# Normally no need to change this
SRCDIR = ../../src
BINDIR = ../../bin
I can not seem to locate the problem. Please help me regarding this matter. Thank you.
`
You can try compiling your application using mpiifort instead of doing it with ifort compiler. You are getting the undefined reference to `MPI_Comm_rank errors because your application did not get linked with the MPI libraries. mpiifort compiler uses intel ifort compiler along with MPI wrappers.
I have just installed Qt Creator 3.2.2 on OSX 10.9.5, put line QMAKE_MAC_SDK = macosx10.9 into .pro file and changed the line QMAKE_MAC_SDK = macosx10.8 into QMAKE_MAC_SDK = macosx10.9 inside device.pri file. Now I'm trying to compile a very simple project. And it doesn't compile. It gives me the following output:
23:11:21: Starting: "/usr/bin/make" clean
rm -f main.o
rm -f *~ core *.core
23:11:21: The process "/usr/bin/make" exited normally.
23:11:21: Configuration unchanged, skipping qmake step.
23:11:21: Starting: "/usr/bin/make"
/Applications/Xcode 6.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -g -isysroot /Applications/Xcode 6.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk -mFile Doesn't Exist, Will Create: /Applications/Xcode Invalid Arguments -version-min=10.6 -Wall -W -fPIE -DQT_CORE_LIB -I/Applications/QT/5.3/clang_64/mkspecs/macx-clang -I../Test -I/Applications/QT/5.3/clang_64/lib/QtCore.framework/Versions/5/Headers -I. -I. -F/Applications/QT/5.3/clang_64/lib -o main.o ../Test/main.cpp
/bin/sh: -c: line 0: unexpected EOF while looking for matching `''
/bin/sh: -c: line 1: syntax error: unexpected end of file
make: *** [main.o] Error 2
23:11:22: The process "/usr/bin/make" exited with code 2.
Error while building/deploying project Test (kit: Desktop Qt 5.3 clang 64bit)
When executing step "Make"
23:11:22: Elapsed time: 00:00.
What's wrong here? How do I fix it?
EDIT. A part of Makefile:
MAKEFILE = Makefile
####### Compiler, tools and options
CC = /Applications/Xcode 6.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
CXX = /Applications/Xcode 6.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++
DEFINES = -DQT_CORE_LIB
CFLAGS = -pipe -g -isysroot /Applications/Xcode 6.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk -mFile Doesn't Exist, Will Create: /Applications/Xcode Invalid Arguments -version-min=10.6 -Wall -W -fPIE $(DEFINES)
CXXFLAGS = -pipe -g -isysroot /Applications/Xcode 6.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk -mFile Doesn't Exist, Will Create: /Applications/Xcode Invalid Arguments -version-min=10.6 -Wall -W -fPIE $(DEFINES)
INCPATH = -I/Applications/QT/5.3/clang_64/mkspecs/macx-clang -I../Test -I/Applications/QT/5.3/clang_64/lib/QtCore.framework/Versions/5/Headers -I. -I. -F/Applications/QT/5.3/clang_64/lib
LINK = /Applications/Xcode 6.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++
LFLAGS = -headerpad_max_install_names -Wl,-syslibroot,/Applications/Xcode 6.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk -mFile Doesn't Exist, Will Create: /Applications/Xcode Invalid Arguments -version-min=10.6
LIBS = $(SUBLIBS) -F/Applications/QT/5.3/clang_64/lib -framework QtCore
AR = /Applications/Xcode 6.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ar cq
RANLIB = /Applications/Xcode 6.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib -s
QMAKE = /Applications/QT/5.3/clang_64/bin/qmake
TAR = tar -cf
COMPRESS = gzip -9f
COPY = cp -f
SED = sed
COPY_FILE = cp -f
COPY_DIR = cp -f -R
STRIP =
INSTALL_FILE = $(COPY_FILE)
INSTALL_DIR = $(COPY_DIR)
INSTALL_PROGRAM = $(COPY_FILE)
DEL_FILE = rm -f
SYMLINK = ln -f -s
DEL_DIR = rmdir
MOVE = mv -f
CHK_DIR_EXISTS= test -d
MKDIR = mkdir -p
I've an OpenSUSE OS and want to compile GCC from scratch. I want to compile 4.9.1 version because of the c++11 support. I am following this guide here. I am using gcc version 4.8.3 for compilation. After executing make, I get following errors;
libtool: compile: /mnt/disk2/gccWork-Ozgur/4.9.1-objdir/./gcc/xgcc -shared-libgcc -B/mnt/disk2/gccWork-Ozgur/4.9.1-objdir/./gcc -nostdinc++ -L/mnt/disk2/gccWork-Ozgur/4.9.1-objdir/x86_64-unknown-linux-gnu/libstdc++-v3/src -L/mnt/disk2/gccWork-Ozgur/4.9.1-objdir/x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -L/mnt/disk2/gccWork-Ozgur/4.9.1-objdir/x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs -B/mnt/disk2/gccWork-Ozgur/4.9.1-install/x86_64-unknown-linux-gnu/bin/ -B/mnt/disk2/gccWork-Ozgur/4.9.1-install/x86_64-unknown-linux-gnu/lib/ -isystem /mnt/disk2/gccWork-Ozgur/4.9.1-install/x86_64-unknown-linux-gnu/include -isystem /mnt/disk2/gccWork-Ozgur/4.9.1-install/x86_64-unknown-linux-gnu/sys-include -D_GNU_SOURCE -D_DEBUG -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS -D__STDC_LIMIT_MACROS -I. -I../../../../gcc-4.9.1/libsanitizer/sanitizer_common -I.. -I ../../../../gcc-4.9.1/libsanitizer/include -isystem ../../../../gcc-4.9.1/libsanitizer/include/system -Wall -W -Wno-unused-parameter -Wwrite-strings -pedantic -Wno-long-long -fPIC -fno-builtin -fno-exceptions -fno-rtti -fomit-frame-pointer -funwind-tables -fvisibility=hidden -Wno-variadic-macros -I../../libstdc++-v3/include -I../../libstdc++-v3/include/x86_64-unknown-linux-gnu -I../../../../gcc-4.9.1/libsanitizer/../libstdc++-v3/libsupc++ -DSANITIZER_LIBBACKTRACE -DSANITIZER_CP_DEMANGLE -I ../../../../gcc-4.9.1/libsanitizer/../libbacktrace -I ../libbacktrace -I ../../../../gcc-4.9.1/libsanitizer/../include -include ../../../../gcc-4.9.1/libsanitizer/libbacktrace/backtrace-rename.h -g -O2 -D_GNU_SOURCE -MT sanitizer_platform_limits_posix.lo -MD -MP -MF .deps/sanitizer_platform_limits_posix.Tpo -c ../../../../gcc-4.9.1/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc -fPIC -DPIC -o .libs/sanitizer_platform_limits_posix.o
../../../../gcc-4.9.1/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc:232:27: error: ‘PTRACE_GETSIGINFO’ was not declared in this scope
int ptrace_getsiginfo = PTRACE_GETSIGINFO;
^
../../../../gcc-4.9.1/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc:233:27: error: ‘PTRACE_SETSIGINFO’ was not declared in this scope
int ptrace_setsiginfo = PTRACE_SETSIGINFO;
^
../../../../gcc-4.9.1/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc:390:30: error: ‘EVIOCGREP’ was not declared in this scope
unsigned IOCTL_EVIOCGREP = EVIOCGREP;
^
../../../../gcc-4.9.1/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc:399:30: error: ‘EVIOCSREP’ was not declared in this scope
unsigned IOCTL_EVIOCSREP = EVIOCSREP;
^
../../../../gcc-4.9.1/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc:682:36: error: ‘FS_IOC_GETFLAGS’ was not declared in this scope
unsigned IOCTL_FS_IOC_GETFLAGS = FS_IOC_GETFLAGS;
^
../../../../gcc-4.9.1/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc:683:38: error: ‘FS_IOC_GETVERSION’ was not declared in this scope
unsigned IOCTL_FS_IOC_GETVERSION = FS_IOC_GETVERSION;
^
../../../../gcc-4.9.1/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc:684:36: error: ‘FS_IOC_SETFLAGS’ was not declared in this scope
unsigned IOCTL_FS_IOC_SETFLAGS = FS_IOC_SETFLAGS;
^
../../../../gcc-4.9.1/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc:685:38: error: ‘FS_IOC_SETVERSION’ was not declared in this scope
unsigned IOCTL_FS_IOC_SETVERSION = FS_IOC_SETVERSION;
^
make[4]: *** [sanitizer_platform_limits_posix.lo] Error 1
make[4]: Leaving directory `/mnt/disk2/gccWork-Ozgur/4.9.1-objdir/x86_64-unknown-linux-gnu/libsanitizer/sanitizer_common'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/mnt/disk2/gccWork-Ozgur/4.9.1-objdir/x86_64-unknown-linux-gnu/libsanitizer'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/mnt/disk2/gccWork-Ozgur/4.9.1-objdir/x86_64-unknown-linux-gnu/libsanitizer'
make[1]: *** [all-target-libsanitizer] Error 2
make[1]: Leaving directory `/mnt/disk2/gccWork-Ozgur/4.9.1-objdir'
make: *** [all] Error 2
Any help is appreciated. Thank you
I'm not sure what to do here, I ran make and got this:
make[2]: Entering directory `/tmp/openssl-1.0.1/test'
( :; LIBDEPS="${LIBDEPS:--L.. -lssl -L.. -lcrypto -ldl}"; LDCMD="${LDCMD:-gcc}"; LDFLAGS="${LDFLAGS:--DOPENSSL_THREADS -D_REENTRANT -DDSO_DLFCN -DHAVE_DLFCN_H -fno-exceptions -Wa,--noexecstack -m64 -DL_ENDIAN -DTERMIO -O3 -Wall -DOPENSSL_IA32_SSE2 -DOPENSSL_BN_ASM_MONT -DOPENSSL_BN_ASM_MONT5 -DOPENSSL_BN_ASM_GF2m -DSHA1_ASM -DSHA256_ASM -DSHA512_ASM -DMD5_ASM -DAES_ASM -DVPAES_ASM -DBSAES_ASM -DWHIRLPOOL_ASM -DGHASH_ASM}"; LIBPATH=`for x in $LIBDEPS; do echo $x; done | sed -e 's/^ *-L//;t' -e d | uniq`; LIBPATH=`echo $LIBPATH | sed -e 's/ /:/g'`; LD_LIBRARY_PATH=$LIBPATH:$LD_LIBRARY_PATH ${LDCMD} ${LDFLAGS} -o ${APPNAME:=rc4test} rc4test.o ${LIBDEPS} )
rc4test.o: In function `main':
rc4test.c:(.text+0x30): undefined reference to `OPENSSL_cpuid_setup'
collect2: ld returned 1 exit status
make[2]: *** [link_app.] Error 1
make[2]: Leaving directory `/tmp/openssl-1.0.1/test'
make[1]: *** [rc4test] Error 2
make[1]: Leaving directory `/tmp/openssl-1.0.1/test'
make: *** [build_tests] Error 1
I think this is a gcc thing, but I am not sure how to approach this. Should I be compiling this manually?
I ran into the same problem, and was able to solve it by passing adding -DOPENSSL_PIC to the config call:
./config -fPIC -DOPENSSL_PIC