I am running a model with moi compiled with gfortran all model compilations are ok but when I run the model I am having the below error.
It is a numerical model I am using on a linux computer 8 processor and strangely is having this error.
malloc: using debugging hooks
malloc: using debugging hooks
malloc: using debugging hooks
*** glibc detected *** ./rsm.x: free(): invalid pointer: 0x0000000097b65980 ***
*** glibc detected *** ./rsm.x: free(): invalid pointer: 0x0000000097b761a0 ***
*** glibc detected *** ./rsm.x: free(): invalid pointer: 0x000000008b4b1d00 ***
*** glibc detected *** ./rsm.x: free(): invalid pointer: 0x000000008b4c2520 ***
*** glibc detected *** ./rsm.x: free(): invalid pointer: 0x0000000097b55360 ***
*** glibc detected *** ./rsm.x: free(): invalid pointer: 0x000000008b4a16e0 ***
*** glibc detected *** ./rsm.x: free(): invalid pointer: 0x0000000086abd9c0 ***
*** glibc detected *** ./rsm.x: free(): invalid pointer: 0x0000000086ace1e0 ***
*** glibc detected *** ./rsm.x: free(): invalid pointer: 0x0000000096cfb990 ***
*** glibc detected *** ./rsm.x: free(): invalid pointer: 0x0000000096d0c1b0 ***
*** glibc detected *** ./rsm.x: free(): invalid pointer: 0x0000000086aad3a0 ***
*** glibc detected *** ./rsm.x: free(): invalid pointer: 0x0000000096ceb370 ***
+ '[' 11 -ne 0 ']'
+ exit 8
+ exit 8
:wq
Related
Rvm install ruby 2.1.2, No binary rubies available, it try compile error stack:
`rvm install 2.1.2`
error: ossl_ssl.c:115:69: note: in definition of macro ‘OSSL_SSL_METHOD_ENTRY’
#define OSSL_SSL_METHOD_ENTRY(name) { #name, (SSL_METHOD *(*)(void))name##_method }
^
Makefile:280: recipe for target 'ossl_ssl.o' failed
make[2]: *** [ossl_ssl.o] Error 1
make[2]: *** Attente des tâches non terminées....
make[2]: Leaving directory '/home/jules/.rvm/src/ruby-2.1.1/ext/openssl'
exts.mk:187: recipe for target 'ext/openssl/all' failed
make[1]: *** [ext/openssl/all] Error 2
make[1]: Leaving directory '/home/jules/.rvm/src/ruby-2.1.1'
uncommon.mk:180: recipe for target 'build-ext' failed
make: *** [build-ext] Error 2
pastbin stack
Try rvm pkg install openssl
This should install the openssl dependencies that rvm cannot find to $HOME/.rvm/usr.
Then you can install ruby with rvm with the following:
rvm install 2.1.2 --with-openssl-dir=$HOME/.rvm/usr
I'm getting an error installing syck on Ubuntu 15.04. Building the native extensions fails:
Installing syck 1.0.1 with native extensions
Gem::Ext::BuildError: ERROR: Failed to build gem native extension.
/home/markus/.rvm/rubies/ruby-2.2.1/bin/ruby -r ./siteconf20150618-8242-1z0c5iw.rb extconf.rb
checking for st.h... yes
creating Makefile
make "DESTDIR=" clean
make "DESTDIR="
compiling bytecode.c
compiling implicit.c
compiling token.c
token.re: In function ‘sycklex_yaml_utf8’:
token.re:541:36: warning: variable ‘lvl’ set but not used [-Wunused-but-set-variable]
compiling rubyext.c
rubyext.c:31:20: error: field ‘hash’ has incomplete type
struct RHash hash;
^
rubyext.c: In function ‘syck_seq_initialize’:
rubyext.c:1529:15: warning: variable ‘node’ set but not used [-Wunused-but-set-variable]
SyckNode *node;
^
Makefile:237: recipe for target 'rubyext.o' failed
make: *** [rubyext.o] Error 1
make failed, exit code 2
Gem files will remain installed in /home/markus/.rvm/gems/ruby-2.2.1#mygemset/gems/syck-1.0.1 for inspection.
Results logged to /home/markus/.rvm/gems/ruby-2.2.1#mygemset/extensions/x86_64-linux/2.2.0/syck-1.0.1/gem_make.out
An error occurred while installing syck (1.0.1), and Bundler cannot continue.
Make sure that `gem install syck -v '1.0.1'` succeeds before bundling.
Does someone have an idea what the issue is and how to fix it?
I am using
ruby 1.9.3p547 (2014-05-14 revision 45962)
Rails 4.1.6
when I try to upgrade bcrypt
gem install bcrypt -v '3.1.9
or
gem install bcrypt
I am getting an error
make
compiling bcrypt_ext.c
make: *** [bcrypt_ext.o] Segmentation fault: 11
make failed, exit code 2
Any thoughts how to fix that please?
Gem::Ext::BuildError: ERROR: Failed to build gem native extension.
/Users/igor/.rvm/rubies/ruby-1.9.3-p547/bin/ruby extconf.rb
creating Makefile
make clean
make
compiling bcrypt_ext.c
make: *** [bcrypt_ext.o] Segmentation fault: 11
make failed, exit code 2
Gem files will remain installed in /Users/igor/.rvm/gems/ruby-1.9.3-p547/gems/bcrypt-3.1.9 for inspection.
Results logged to /Users/igor/.rvm/gems/ruby-1.9.3-p547/extensions/x86_64-darwin-13/1.9.1/bcrypt-3.1.9/gem_make.out
An error occurred while installing bcrypt (3.1.9), and Bundler cannot continue.
Make sure that `gem install bcrypt -v '3.1.9'` succeeds before bundling.
Im trying to install wpscan
I have macbook pro 10.9.2
Im running mavericks osx.
I followed the instruction:
git clone https://github.com/wpscanteam/wpscan.git
cd wpscan
and then I'm trying to
sudo gem install bundler && bundle install --without test development
and after that I get this error:
sudo gem install bundler && bundle install --without test development
Successfully installed bundler-1.6.1
Parsing documentation for bundler-1.6.1
1 gem installed
Fetching gem metadata from https://rubygems.org/.........
Fetching additional metadata from https://rubygems.org/..
Resolving dependencies...
Gem::Installer::ExtensionBuildError: ERROR: Failed to build gem native extension.
/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby extconf.rb
checking for ffi.h... no
checking for ffi.h in /usr/local/include,/usr/include/ffi... yes
checking for ffi_call() in -lffi... yes
checking for ffi_prep_closure()... yes
checking for ffi_raw_call()... no
checking for rb_thread_blocking_region()... yes
checking for rb_thread_call_with_gvl()... yes
checking for rb_thread_call_without_gvl()... yes
checking for ffi_prep_cif_var()... no
creating extconf.h
creating Makefile
make "DESTDIR="
compiling AbstractMemory.c
compiling ArrayType.c
compiling Buffer.c
compiling Call.c
Call.c:303:5: warning: implicit declaration of function 'rb_thread_call_without_gvl' is invalid in C99 [-Wimplicit-function-declaration]
rbffi_thread_blocking_region(call_blocking_function, data, (void *) -1, NULL);
^
./Thread.h:78:39: note: expanded from macro 'rbffi_thread_blocking_region'
# define rbffi_thread_blocking_region rb_thread_call_without_gvl
^
1 warning generated.
compiling ClosurePool.c
compiling DataConverter.c
DataConverter.c:43:1: warning: control may reach end of non-void function [-Wreturn-type]
}
^
1 warning generated.
compiling DynamicLibrary.c
compiling ffi.c
compiling Function.c
Function.c:479:33: warning: incompatible pointer types passing 'VALUE (void *)' to parameter of type 'void *(*)(void *)' [-Wincompatible-pointer-types]
rb_thread_call_with_gvl(callback_with_gvl, &cb);
^~~~~~~~~~~~~~~~~
Function.c:102:46: note: passing argument to parameter 'func' here
extern void *rb_thread_call_with_gvl(void *(*func)(void *), void *data1);
^
Function.c:563:9: warning: implicit declaration of function 'rb_thread_call_without_gvl' is invalid in C99 [-Wimplicit-function-declaration]
rb_thread_call_without_gvl(async_cb_wait, &w, async_cb_stop, &w);
^
Function.c:738:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
3 warnings generated.
compiling FunctionInfo.c
compiling LastError.c
compiling LongDouble.c
compiling MappedType.c
compiling MemoryPointer.c
compiling MethodHandle.c
compiling Platform.c
compiling Pointer.c
compiling Struct.c
compiling StructByReference.c
compiling StructByValue.c
compiling StructLayout.c
compiling Thread.c
compiling Type.c
compiling Types.c
compiling Variadic.c
linking shared-object ffi_c.bundle
clang: error: unknown argument: '-multiply_definedsuppress' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
make: *** [ffi_c.bundle] Error 1
Gem files will remain installed in /var/folders/pf/hl1jk3kx5_j2q70fbwyj18180000gn/T/bundler20140407-7061-7v0bbm/ffi-1.9.3/gems/ffi-1.9.3 for inspection.
Results logged to /var/folders/pf/hl1jk3kx5_j2q70fbwyj18180000gn/T/bundler20140407-7061-7v0bbm/ffi-1.9.3/gems/ffi-1.9.3/ext/ffi_c/gem_make.out
An error occurred while installing ffi (1.9.3), and Bundler cannot continue.
Make sure that `gem install ffi -v '1.9.3'` succeeds before bundling.
can anyone help me?
Thanks.
My guess is that this is your problem (here with json, but it appears to be a variant of the same problem): Ruby Gem install Json fails on Mavericks and Xcode 5.1 - unknown argument: '-multiply_definedsuppress'
Long story short: the temporary fix is "ARCHFLAGS=-Wno-error=unused-command-line-argument-hard-error-in-future gem install [gem]" where [gem] is the particular gem whose command-line argument is causing the crash.
I have an error message while running sudo bundle install:
Gem::Ext::BuildError: ERROR: Failed to build gem native extension.
/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby extconf.rb
checking for ruby/util.h... yes
creating Makefile
make "DESTDIR=" clean
make "DESTDIR="
compiling bcrypt_ext.c
compiling crypt.c
compiling crypt_blowfish.c
compiling crypt_gensalt.c
compiling wrapper.c
linking shared-object bcrypt_ext.bundle
clang: error: unknown argument: '-multiply_definedsuppress' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
make: *** [bcrypt_ext.bundle] Error 1
make failed, exit code 2
Gem files will remain installed in /Library/Ruby/Gems/2.0.0/gems/bcrypt-3.1.7 for inspection.
Results logged to /Library/Ruby/Gems/2.0.0/extensions/universal-darwin-13/2.0.0/bcrypt-3.1.7/gem_make.out
An error occurred while installing bcrypt (3.1.7), and Bundler cannot continue.
Make sure that `gem install bcrypt -v '3.1.7'` succeeds before bundling.
Then I tried to run sudo gem install bcrypt -v '3.1.7' and have below error message:
Building native extensions. This could take a while...
ERROR: Error installing bcrypt:
ERROR: Failed to build gem native extension.
/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby extconf.rb
checking for ruby/util.h... yes
creating Makefile
make "DESTDIR=" clean
make "DESTDIR="
compiling bcrypt_ext.c
compiling crypt.c
compiling crypt_blowfish.c
compiling crypt_gensalt.c
compiling wrapper.c
linking shared-object bcrypt_ext.bundle
clang: error: unknown argument: '-multiply_definedsuppress' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
make: *** [bcrypt_ext.bundle] Error 1
make failed, exit code 2
Gem files will remain installed in /Library/Ruby/Gems/2.0.0/gems/bcrypt-3.1.7 for inspection.
Results logged to /Library/Ruby/Gems/2.0.0/extensions/universal-darwin-13/2.0.0/bcrypt-3.1.7/gem_make.out
After this, I try to run sudo gem install bcrypt, still not working. Any tips?
I had upgraded Xcode from the Mac App Store, and that caused this particular error for me.
The way to fix it in my case: run Xcode and accept the license terms, etc. Then when I ran bundle install, it compiled and installed bcrypt just fine.