We are given a tree with n nodes in form of a pointer to its root node, where each node contains a pointer to its parent, left child and right child, and also a key which is an integer. For each node v I want to add additional field v.bigger which should contain number of nodes with key bigger than v.key, that are in a subtree rooted at v. Adding such a field to all nodes of a tree should take O(n log n) time in total.
I'm looking for any hints that would allow me to solve this problem. I tried several heuristics - for example when thinking about doing this problem in bottom-up manner, for a fixed node v, v.left and v.right could provide v with some kind of set (balanced BST?) with operation bigger(x), which for a given x returns a number of elements bigger than x in that set in logarihmic time. The problem is, we would need to merge such sets in O(log n), so this seems as a no-go, as I don't know any ordered set like data structure which supports quick merging.
I also thought about top-down approach - a node v adds one to some u.bigger for some node u if and only if u lies on a simple path to the root and u<v. So v could update all such u's somehow, but I couldn't come up with any reasonable way of doing that...
So, what is the right way of thinking about this problem?
Perform depth-first search in given tree (starting from root node).
When any node is visited for the first time (coming from parent node), add its key to some order-statistics data structure (OSDS). At the same time query OSDS for number of keys larger than current key and initialize v.bigger with negated result of this query.
When any node is visited for the last time (coming from right child), query OSDS for number of keys larger than current key and add the result to v.bigger.
You could apply this algorithm to any rooted trees (not necessarily binary trees). And it does not necessarily need parent pointers (you could use DFS stack instead).
For OSDS you could use either augmented BST or Fenwick tree. In case of Fenwick tree you need to preprocess given tree so that values of the keys are compressed: just copy all the keys to an array, sort it, remove duplicates, then substitute keys by their indexes in this array.
Basic idea:
Using the bottom-up approach, each node will get two ordered lists of the values in the subtree from both sons and then find how many of them are bigger. When finished, pass the combined ordered list upwards.
Details:
Leaves:
Leaves obviously have v.bigger=0. The node above them creates a two item list of the values, updates itself and adds its own value to the list.
All other nodes:
Get both lists from sons and merge them in an ordered way. Since they are already sorted, this is O(number of nodes in subtree). During the merge you can also find how many nodes qualify the condition and get the value of v.bigger for the node.
Why is this O(n logn)?
Every node in the tree counts through the number of nodes in its subtree. This means the root counts all the nodes in the tree, the sons of the root each count (combined) the number of nodes in the tree (yes, yes, -1 for the root) and so on all nodes in the same height count together the number of nodes that are lower. This gives us that the number of nodes counted is number of nodes * height of the tree - which is O(n logn)
What if for each node we keep a separate binary search tree (BST) which consists of nodes of the subtree rooted at that node.
For a node v at level k, merging the two subtrees v.left and v.right which both have O(n/2^(k+1)) elements is O(n/2^k). After forming the BST for this node, we can find v.bigger in O(n/2^(k+1)) time by just counting the elements in the right (traditionally) subtree of the BST. Summing up, we have O(3*n/2^(k+1)) operations for a single node at level k. There are a total of 2^k many level k nodes, therefore we have O(2^k*3*n/2^(k+1)) which is simplified as O(n) (dropping the 3/2 constant). operations at level k. There are log(n) levels, hence we have O(n*log(n)) operations in total.
I am looking for an algorithm to split a tree with N nodes (where the maximum degree of each node is 3) by removing one edge from it, so that the two trees that come as the result have as close as possible to N/2. How do I find the edge that is "the most centered"?
The tree comes as an input from a previous stage of the algorithm and is input as a graph - so it's not balanced nor is it clear which node is the root.
My idea is to find the longest path in the tree and then select the edge in the middle of the longest path. Does it work?
Optimally, I am looking for a solution that can ensure that neither of the trees has more than 2N / 3 nodes.
Thanks for your answers.
I don't believe that your initial algorithm works for the reason I mentioned in the comments. However, I think that you can solve this in O(n) time and space using a modified DFS.
Begin by walking the graph to count how many total nodes there are; call this n. Now, choose an arbitrary node and root the tree at it. We will now recursively explore the tree starting from the root and will compute for each subtree how many nodes are in each subtree. This can be done using a simple recursion:
If the current node is null, return 0.
Otherwise:
For each child, compute the number of nodes in the subtree rooted at that child.
Return 1 + the total number of nodes in all child subtrees
At this point, we know for each edge what split we will get by removing that edge, since if the subtree below that edge has k nodes in it, the spilt will be (k, n - k). You can thus find the best cut to make by iterating across all nodes and looking for the one that balances (k, n - k) most evenly.
Counting the nodes takes O(n) time, and running the recursion visits each node and edge at most O(1) times, so that takes O(n) time as well. Finding the best cut takes an additional O(n) time, for a net runtime of O(n). Since we need to store the subtree node counts, we need O(n) memory as well.
Hope this helps!
If you see my answer to Divide-And-Conquer Algorithm for Trees, you can see I'll find a node that partitions tree into 2 nearly equal size trees (bottom up algorithm), now you just need to choose one of the edges of this node to do what you want.
Your current approach is not working assume you have a complete binary tree, now add a path of length 3*log n to one of leafs (name it bad leaf), your longest path will be within one of a other leafs to the end of path connected to this bad leaf, and your middle edge will be within this path (in fact after you passed bad leaf) and if you partition base on this edge you have a part of O(log n) and another part of size O(n) .
Given an undirected graph, I want to generate all subgraphs which are trees of size N, where size refers to the number of edges in the tree.
I am aware that there are a lot of them (exponentially many at least for graphs with constant connectivity) - but that's fine, as I believe the number of nodes and edges makes this tractable for at least smallish values of N (say 10 or less).
The algorithm should be memory-efficient - that is, it shouldn't need to have all graphs or some large subset of them in memory at once, since this is likely to exceed available memory even for relatively small graphs. So something like DFS is desirable.
Here's what I'm thinking, in pseudo-code, given the starting graph graph and desired length N:
Pick any arbitrary node, root as a starting point and call alltrees(graph, N, root)
alltrees(graph, N, root)
given that node root has degree M, find all M-tuples with integer, non-negative values whose values sum to N (for example, for 3 children and N=2, you have (0,0,2), (0,2,0), (2,0,0), (0,1,1), (1,0,1), (1,1,0), I think)
for each tuple (X1, X2, ... XM) above
create a subgraph "current" initially empty
for each integer Xi in X1...XM (the current tuple)
if Xi is nonzero
add edge i incident on root to the current tree
add alltrees(graph with root removed, N-1, node adjacent to root along edge i)
add the current tree to the set of all trees
return the set of all trees
This finds only trees containing the chosen initial root, so now remove this node and call alltrees(graph with root removed, N, new arbitrarily chosen root), and repeat until the size of the remaining graph < N (since no trees of the required size will exist).
I forgot also that each visited node (each root for some call of alltrees) needs to be marked, and the set of children considered above should only be the adjacent unmarked children. I guess we need to account for the case where no unmarked children exist, yet depth > 0, this means that this "branch" failed to reach the required depth, and cannot form part of the solution set (so the whole inner loop associated with that tuple can be aborted).
So will this work? Any major flaws? Any simpler/known/canonical way to do this?
One issue with the algorithm outlined above is that it doesn't satisfy the memory-efficient requirement, as the recursion will hold large sets of trees in memory.
This needs an amount of memory that is proportional to what is required to store the graph. It will return every subgraph that is a tree of the desired size exactly once.
Keep in mind that I just typed it into here. There could be bugs. But the idea is that you walk the nodes one at a time, for each node searching for all trees that include that node, but none of the nodes that were searched previously. (Because those have already been exhausted.) That inner search is done recursively by listing edges to nodes in the tree, and for each edge deciding whether or not to include it in your tree. (If it would make a cycle, or add an exhausted node, then you can't include that edge.) If you include it your tree then the used nodes grow, and you have new possible edges to add to your search.
To reduce memory use, the edges that are left to look at is manipulated in place by all of the levels of the recursive call rather than the more obvious approach of duplicating that data at each level. If that list was copied, your total memory usage would get up to the size of the tree times the number of edges in the graph.
def find_all_trees(graph, tree_length):
exhausted_node = set([])
used_node = set([])
used_edge = set([])
current_edge_groups = []
def finish_all_trees(remaining_length, edge_group, edge_position):
while edge_group < len(current_edge_groups):
edges = current_edge_groups[edge_group]
while edge_position < len(edges):
edge = edges[edge_position]
edge_position += 1
(node1, node2) = nodes(edge)
if node1 in exhausted_node or node2 in exhausted_node:
continue
node = node1
if node1 in used_node:
if node2 in used_node:
continue
else:
node = node2
used_node.add(node)
used_edge.add(edge)
edge_groups.append(neighbors(graph, node))
if 1 == remaining_length:
yield build_tree(graph, used_node, used_edge)
else:
for tree in finish_all_trees(remaining_length -1
, edge_group, edge_position):
yield tree
edge_groups.pop()
used_edge.delete(edge)
used_node.delete(node)
edge_position = 0
edge_group += 1
for node in all_nodes(graph):
used_node.add(node)
edge_groups.append(neighbors(graph, node))
for tree in finish_all_trees(tree_length, 0, 0):
yield tree
edge_groups.pop()
used_node.delete(node)
exhausted_node.add(node)
Assuming you can destroy the original graph or make a destroyable copy I came up to something that could work but could be utter sadomaso because I did not calculate its O-Ntiness. It probably would work for small subtrees.
do it in steps, at each step:
sort the graph nodes so you get a list of nodes sorted by number of adjacent edges ASC
process all nodes with the same number of edges of the first one
remove those nodes
For an example for a graph of 6 nodes finding all size 2 subgraphs (sorry for my total lack of artistic expression):
Well the same would go for a bigger graph, but it should be done in more steps.
Assuming:
Z number of edges of most ramificated node
M desired subtree size
S number of steps
Ns number of nodes in step
assuming quicksort for sorting nodes
Worst case:
S*(Ns^2 + MNsZ)
Average case:
S*(NslogNs + MNs(Z/2))
Problem is: cannot calculate the real omicron because the nodes in each step will decrease depending how is the graph...
Solving the whole thing with this approach could be very time consuming on a graph with very connected nodes, however it could be paralelized, and you could do one or two steps, to remove dislocated nodes, extract all subgraphs, and then choose another approach on the remainder, but you would have removed a lot of nodes from the graph so it could decrease the remaining run time...
Unfortunately this approach would benefit the GPU not the CPU, since a LOT of nodes with the same number of edges would go in each step.... and if parallelization is not used this approach is probably bad...
Maybe an inverse would go better with the CPU, sort and proceed with nodes with the maximum number of edges... those will be probably less at start, but you will have more subgraphs to extract from each node...
Another possibility is to calculate the least occuring egde count in the graph and start with nodes that have it, that would alleviate the memory usage and iteration count for extracting subgraphs...
Unless I'm reading the question wrong people seem to be overcomplicating it.
This is just "all possible paths within N edges" and you're allowing cycles.
This, for two nodes: A, B and one edge your result would be:
AA, AB, BA, BB
For two nodes, two edges your result would be:
AAA, AAB, ABA, ABB, BAA, BAB, BBA, BBB
I would recurse into a for each and pass in a "template" tuple
N=edge count
TempTuple = Tuple_of_N_Items ' (01,02,03,...0n) (Could also be an ordered list!)
ListOfTuple_of_N_Items ' Paths (could also be an ordered list!)
edgeDepth = N
Method (Nodes, edgeDepth, TupleTemplate, ListOfTuples, EdgeTotal)
edgeDepth -=1
For Each Node In Nodes
if edgeDepth = 0 'Last Edge
ListOfTuples.Add New Tuple from TupleTemplate + Node ' (x,y,z,...,Node)
else
NewTupleTemplate = TupleTemplate + Node ' (x,y,z,Node,...,0n)
Method(Nodes, edgeDepth, NewTupleTemplate, ListOfTuples, EdgeTotal
next
This will create every possible combination of vertices for a given edge count
What's missing is the factory to generate tuples given an edge count.
You end up with a list of possible paths and the operation is Nodes^(N+1)
If you use ordered lists instead of tuples then you don't need to worry about a factory to create the objects.
If memory is the biggest problem you can use a NP-ish solution using tools from formal verification. I.e., guess a subset of nodes of size N and check whether it's a graph or not. To save space you can use a BDD (http://en.wikipedia.org/wiki/Binary_decision_diagram) to represent the original graph's nodes and edges. Plus you can use a symbolic algorithm to check if the graph you guessed is really a graph - so you don't need to construct the original graph (nor the N-sized graphs) at any point. Your memory consumption should be (in big-O) log(n) (where n is the size of the original graph) to store the original graph, and another log(N) to store every "small graph" you want.
Another tool (which is supposed to be even better) is to use a SAT solver. I.e., construct a SAT formula that is true iff the sub-graph is a graph and supply it to a SAT solver.
For a graph of Kn there are approximately n! paths between any two pairs of vertices. I haven't gone through your code but here is what I would do.
Select a pair of vertices.
Start from a vertex and try to reach the destination vertex recursively (something like dfs but not exactly). I think this would output all the paths between the chosen vertices.
You could do the above for all possible pairs of vertices to get all simple paths.
It seems that the following solution will work.
Go over all partitions into two parts of the set of all vertices. Then count the number of edges which endings lie in different parts (k); these edges correspond to the edge of the tree, they connect subtrees for the first and the second parts. Calculate the answer for both parts recursively (p1, p2). Then the answer for the entire graph can be calculated as sum over all such partitions of k*p1*p2. But all trees will be considered N times: once for each edge. So, the sum must be divided by N to get the answer.
Your solution as is doesn't work I think, although it can be made to work. The main problem is that the subproblems may produce overlapping trees so when you take the union of them you don't end up with a tree of size n. You can reject all solutions where there is an overlap, but you may end up doing a lot more work than needed.
Since you are ok with exponential runtime, and potentially writing 2^n trees out, having V.2^V algorithms is not not bad at all. So the simplest way of doing it would be to generate all possible subsets n nodes, and then test each one if it forms a tree. Since testing whether a subset of nodes form a tree can take O(E.V) time, we are potentially talking about V^2.V^n time, unless you have a graph with O(1) degree. This can be improved slightly by enumerating subsets in a way that two successive subsets differ in exactly one node being swapped. In that case, you just have to check if the new node is connected to any of the existing nodes, which can be done in time proportional to number of outgoing edges of new node by keeping a hash table of all existing nodes.
The next question is how do you enumerate all the subsets of a given size
such that no more than one element is swapped between succesive subsets. I'll leave that as an exercise for you to figure out :)
I think there is a good algorithm (with Perl implementation) at this site (look for TGE), but if you want to use it commercially you'll need to contact the author. The algorithm is similar to yours in the question but avoids the recursion explosion by making the procedure include a current working subtree as a parameter (rather than a single node). That way each edge emanating from the subtree can be selectively included/excluded, and recurse on the expanded tree (with the new edge) and/or reduced graph (without the edge).
This sort of approach is typical of graph enumeration algorithms -- you usually need to keep track of a handful of building blocks that are themselves graphs; if you try to only deal with nodes and edges it becomes intractable.
This algorithm is big and not easy one to post here. But here is link to reservation search algorithm using which you can do what you want. This pdf file contains both algorithms. Also if you understand russian you can take a look to this.
So you have a graph with with edges e_1, e_2, ..., e_E.
If I understand correctly, you are looking to enumerate all subgraphs which are trees and contain N edges.
A simple solution is to generate each of the E choose N subgraphs and check if they are trees.
Have you considered this approach? Of course if E is too large then this is not viable.
EDIT:
We can also use the fact that a tree is a combination of trees, i.e. that each tree of size N can be "grown" by adding an edge to a tree of size N-1. Let E be the set of edges in the graph. An algorithm could then go something like this.
T = E
n = 1
while n<N
newT = empty set
for each tree t in T
for each edge e in E
if t+e is a tree of size n+1 which is not yet in newT
add t+e to newT
T = newT
n = n+1
At the end of this algorithm, T is the set of all subtrees of size N. If space is an issue, don't keep a full list of the trees, but use a compact representation, for instance implement T as a decision tree using ID3.
I think problem is under-specified. You mentioned that graph is undirected and that subgraph you are trying to find is of size N. What is missing is number of edges and whenever trees you are looking for binary or you allowed to have multi-trees. Also - are you interested in mirrored reflections of same tree, or in other words does order in which siblings are listed matters at all?
If single node in a tree you trying to find allowed to have more than 2 siblings which should be allowed given that you don't specify any restriction on initial graph and you mentioned that resulting subgraph should contain all nodes.
You can enumerate all subgraphs that have form of tree by performing depth-first traversal. You need to repeat traversal of the graph for every sibling during traversal. When you'll need to repeat operation for every node as a root.
Discarding symmetric trees you will end up with
N^(N-2)
trees if your graph is fully connected mesh or you need to apply Kirchhoff's Matrix-tree theorem
Problem: I have a binary tree, all leaves are numbered (from left to right, starting from 0) and no connection exists between them.
I want an algorithm that, given two indices (of 2 distinct leaves), visits the tree starting from the greater leaf (the one with the higher index) and gets to the lower one.
The internal nodes of the tree do not contain any useful information.
I should chose the path based only on the leaves indices. The path start from a leaf and terminates on a leaf, and of course I can access a leaf if I know its index (through an array of pointers)
The tree is static, no insertion or deletion of nodes is allowed.
I have developed an algorithm to do it but it really sucks... any ideas?
One option would be to find the least common ancestor of the two nodes, along with the sequence of nodes you should take from each node to get to that ancestor. Here's a sketch of the algorithm:
Starting from each node, walk back up to that node's parent until you reach the root. Count the number of nodes on the path from each node to the root. Let the height of the first node be h1 and the height of the second node be h2.
Let h = min(h1, h2). This is the height of the higher of the two nodes.
Starting from each node, keep following the node's parent pointer until both nodes are at height h. Record the nodes you followed during this step. At this point, both nodes are at the same height.
Until you find a common node, keep marching upwards from each node to its parent. Eventually you will hit their common ancestor. At this point, follow the path from the first node up to this ancestor, then down the path from the ancestor down to the second node.
In the worst case, this takes O(h) time and O(h) space, where h is the height of the tree. For a balanced binary tree is this O(lg n) time and space, which is quite good.
If you're interested in a Much More Hardcore version of this algorithm, consider looking into Tarjan's Least Common Ancestors algorithm, which with linear preprocessing time, can be used to find the least common ancestor much more rapidly than this.
Hope this helps!
Distance between any two nodes can be calculated with the help of lowest common ancestor:
Dist(n1, n2) = Dist(root, n1) + Dist(root, n2) - 2*Dist(root, lca)
where lca is lowest common ancestor.
see this for more help about this algorithm and see this video for learning how to calculate lca.