Does reinstalling Macports remove/destroy contents of /opt/local/ directory structure? - macos

I'm running a MacPro G5 w/ 10.5.8. I ran:
sudo port selfupdate and then ran:
sudo port upgrade outdated
When it was all finished, I rebooted and apache2 was broken and would not serve PHP file any longer. If I replace the httpd.conf file, it will serve html files.
I finally gave up and restored the backup and the machine is running again. The problem is I have a second machine that I did the same thing on and don't want to go through the same process. I've read several posts about uninstalling/reinstalling Macports like this one from Kirk Roybal How to do a clean reinstall with macports?, but it doesn't say if this process will destroy or reset the contents of the /opt/local/ directory. Especially the MySQL DBs and htdocs contents. Does anyone know if this process is linked or destructive? I'll make backups of everything, of course, before trying anything.
SOLUTION:
I got it to work by making the php53 install work instead of going backwards. Here's what I did:
sudo port select --set php php53 (set MacPorts to use php53 instead of php5)
sudo port installed (Check to make sure php53-apache2handler is installed)
sudo port install php53-apache2handler (It wasn't and yours probably isn't either)
once that's done installing
php -v (check the version of PHP that's running)
cd /opt/local/apache2/modules
sudo /opt/local/apache2/bin/apxs -a -e -n php mod_php53.so (activates php within apache)
this should append
LoadModule php5_module modules/mod_php53.so
to your /opt/local/apache2/conf/httpd.conf file (check it now)
There will also be a line like this
LoadModule php5_module modules/mod_php5.so
Comment it out or remove it so is doesn't interfere with new install
It should also move a copy of mod_php53.so to
/opt/local/apache2/modules
If it's not there, see php53-apache2handler install above.
Check your httpd.conf file for errors
/opt/local/apache2/bin/httpd -S
Finally, create/edit php.ini file to tell apache2 how to connect to MySQL database
cd /opt/local/etc/php53
sudo cp php.ini-production php.ini (for production machine use development for dev machine)
sudo cp php.ini php.ini.bak
Add the default socket paths to php.ini
pdo_mysql.default_socket=/opt/local/var/run/mysql5/mysqld.sock (may vary based on MySQL version. Check the /opt/local/var/run directory if not sure)
mysql.default_socket=/opt/local/var/run/mysql5/mysqld.sock
mysqli.default_socket=/opt/local/var/run/mysql5/mysqld.sock
If you are having problems connecting to MySQL, check for typos in the above paths FIRST. Trust me it will save you tons of time!
If all went according to plan, you should be able to restart the machine, test to make sure all ports started automatically and things should be working.

The files that you add (eg: MySQL DBs) are not destroyed by an update. If you modify files that are managed by MacPorts (eg: they are listed in 'port contents '), then those modifications will be clobbered by an update.
Some projects install config files as examples and have the user make the real config file so as to not clobber it with an update. It looks like the apache2 port follows this pattern. It installs /opt/local/apache2/conf/original/httpd.conf and then copies it to the real location of /opt/local/apache2/conf/httpd.conf at activation time only if the file does not exist.

Related

Ruby app no longer able to access remote Heroku Postgres - AFTER installing Postgres.app locally

For months now, a ruby (sinatra) app "foo.rb" on my dev't Mac has been using a remote Heroku-hosted Postgres database.
The app does not use ANY local database, neither in development nor production.
For another project, I installed Postgress.app from Heroku, first removing a very OLD version as recommended, using brew remove postgresql
The next time I ran foo.rb, and tried at access the (remote) database with SomeModel.count, I get the error:
PG::ConnectionBad: FATAL: no pg_hba.conf entry for host , user , database , SSL off
I'm confused why the error shows my devt machine address when the database connection config points to a remote postgres url, and why it says SSL off.
Any thoughts how to get rid of the error? Is there any way to see the PATH to the pg_hba.conf it is complaining about, so I can verify it contains the correct host entries?
(I wonder if the pg gem has its own copy squirreled away somewhere.)
The copies of pg_hba.conf that I can find (in /Library/Application Support/XXXX for both the old and new Postgress.app versions) have the correct (and unchanged) host entries.
It looks like your script is trying to connect somewhere that is not properly configured
Things to check in that case:
your database.yml or connection string, DATABASE_URL matches your localhost from postgres.app
is your postgres.app is running and have a db server running (check the elephant icon on the top bar of your osx)
You installed and configured properly the postgres app you need to set the path, you can check by typing psql in a new terminal window, if it runs is ok to go.
Configure your $PATH to use the included command line tools (optional):
sudo mkdir -p /etc/paths.d &&
echo /Applications/Postgres.app/Contents/Versions/latest/bin | sudo tee /etc/paths.d/postgresapp
post your file or part of it in the question, it helps a lot to debug :)
The answer turned out to be:
comment out pg in Gemfile
bundle install
replace pg
bundle install
I suspect when the gem pg is installed, it dynamically establishes some link to postgresql, so if you move postgresql (as I did when I installed Postgres.app) you need to remove the pg gem then re-add it.

enable ldap module in laravel homestead

Currently have an issue where i can not enable the ldap module in homestead. I have changed multiple php.ini files and still nothing seems to be working. Has anyone else had issues with enabling modules in homestead?
Side note: when trying to restart php-fpm i am getting a permission denied issue. They prompt me with a password (which i have tried "secret") but still cant seem to get that to work either.
Have restarted the homestead instance multiple times as well. no prevail.
any thoughts?
Citti
I think this question deserves its own answer as it's pretty easy to install the wrong version of ldap on homestead and not know why things aren't working.
TL;DR: Match the version of ldap to the version of php you're running & install with apt-get.
For example, running homestead v.6.1.0:
cd HOMESTEADFOLDER # on your host
vagrant ssh # access the guest machine
sudo apt-get update # update apt-get package list
sudo apt-get install php7.1-ldap # or whatever version
In my example above, if you switch out php7.1-ldap for php7.0-ldap everything appears to install correctly (it does in fact install correctly) but, in reality, you've installed the module to a version of php that's not actually running. It took me several attempts at rebooting FPM to figure out this is what I had done.
Side note: apt-get will restart php and reload modules so there's no need to try and reboot the server or mess about with .ini files.
While ssh-ed in to the guest machine, you can check that the package is installed with php -m
If ldap is a thing your project needs, it's probably a better idea to handle this in a script. The answer referenced by fh-jashmore in his comment above comment has a simple but solid example: How to automatically enable php extensions in Homestead on vagrant up

Which folder to keep projects for Homebrew nginx port 8080

I am using macbook and installed nginx using Homebrew from the terminal. I think i installed 2-3 versions of nginx in different locations. Now I can see my http://localhost:8080/ is working as it displays nginx home page in browser but how can I place my projects inside nginx? I tried to put those in one of the nginx directory but it does not work if if I try to go to project through browser.
Is there anything from where I can find the exact directory of this running version of nginx?
Use the brew list command:
$ brew list nginx
/usr/local/Cellar/nginx/1.10.1/bin/nginx
/usr/local/Cellar/nginx/1.10.1/homebrew.mxcl.nginx.plist
/usr/local/Cellar/nginx/1.10.1/html -> ../../../var/www
/usr/local/Cellar/nginx/1.10.1/share/man/man8/nginx.8
$ greadlink -f /usr/local/Cellar/nginx/1.10.1/html
/usr/local/var/www
Thus, the symlink links to /usr/local/var/www, and default configuration is likely to do likewise.

psql: could not connect to server: No such file or directory (Mac OS X)

Upon restarting my Mac I got the dreaded Postgres error:
psql: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"?
The reason this happened is because my macbook froze completely due to an unrelated issue and I had to do a hard reboot using the power button. After rebooting I couldn't start Postgres because of this error.
WARNING: If you delete postmaster.pid without making sure there are really no postgres processes running you, could permanently corrupt your database. (PostgreSQL should delete it automatically if the postmaster has exited.).
SOLUTION: This fixed the issue--I deleted this file, and then everything worked!
/usr/local/var/postgres/postmaster.pid
--
and here is how I figured out why this needed to be deleted.
I used the following command to see if there were any PG processes running. for me there were none, I couldn't even start the PG server:
ps auxw | grep post
I searched for the file .s.PGSQL.5432 that was in the error message above. i used the following command:
sudo find / -name .s.PGSQL.5432 -ls
this didn't show anything after searching my whole computer so the file didn't exist, but obviously psql "wanted it to" or "thought it was there".
I took a look at my server logs and saw the following error:
cat /usr/local/var/postgres/server.log
at the end of the server log I see the following error:
FATAL: pre-existing shared memory block (key 5432001, ID 65538) is still in use
HINT: If you're sure there are no old server processes still running, remove the shared memory block or just delete the file "postmaster.pid".
Following the advice in the error message, I deleted the postmaster.pid file in the same directory as server.log. This resolved the issue and I was able to restart.
So, it seems that my macbook freezing and being hard-rebooted caused Postgres to think that it's processes were still running even after reboot. Deleting this file resolved. Lots of people have similar issues but most the answers had to do with file permissions, whereas in my case things were different.
None of the above worked for me. I had to reinstall Postgres the following way :
Uninstall postgresql with brew : brew uninstall postgresql
brew doctor (fix whatever is here)
brew cleanup
Remove all Postgres folders :
rm -r /usr/local/var/postgres
rm -r ~/Library/Application\ Support/Postgres
Reinstall postgresql with brew : brew install postgresql
Start server : brew services start postgresql
You should now have to create your databases... (createdb)
If you're on macOS and installed postgres via homebrew, try restarting it with
brew services restart postgresql
If you're on Ubuntu, you can restart it with either one of these commands
sudo service postgresql restart
sudo /etc/init.d/postgresql restart
Maybe this is unrelated but a similar error appears when you upgrade postgres to a major version using brew; using brew info postgresql found out this that helped:
To migrate existing data from a previous major version of PostgreSQL run:
brew postgresql-upgrade-database
Here is my way:
launchctl unload ~/Library/LaunchAgents/homebrew.mxcl.postgresql.plist
rm /usr/local/var/postgres/postmaster.pid
launchctl load ~/Library/LaunchAgents/homebrew.mxcl.postgresql.plist
The following commands helped me out. The issue was with the PostgreSQL data version. Once upgraded, it started working fine for me.
brew upgrade postgresql
brew postgresql-upgrade-database
brew services restart postgresql
if your postmaster.pid is gone and you can't restart or anything, do this:
pg_ctl -D /usr/local/var/postgres -l /usr/local/var/postgres/server.log start
as explained here initially
For me, the solution was simply restart my computer. I first tried restarting with Brew services and when that didn't work, restarting seemed like the next best option to try before looking into some of the more involved solutions. Everything worked as it should after.
Another class of reasons why this can happen is due to Postgres version updates.
You can confirm this is a problem by looking at the postgres logs:
tail -n 10000 /usr/local/var/log/postgres.log
and seeing entries like:
DETAIL: The data directory was initialized by PostgreSQL version 12, which is not compatible with this version 13.0.
In this case (assuming you are on Mac and using brew), just run:
brew postgresql-upgrade-database
(Oddly, it failed on run 1 and worked on run 2, so try it twice before giving up)
Hello world :)The best but strange way for me was to do next things.
1) Download postgres93.app or other version. Add this app into /Applications/ folder.
2) Add a row (command) into the file .bash_profile (which is in my home directory):
export PATH=/Applications/Postgres93.app/Contents/MacOS/bin/:$PATH
It's a PATH to psql from Postgres93.app. The row (command) runs every time console is started.
3) Launch Postgres93.app from /Applications/ folder. It starts a local server (port is "5432" and host is "localhost").
4) After all of this manipulations I was glad to run $ createuser -SRDP user_name and other commands and to see that it worked! Postgres93.app can be made to run every time your system starts.
5) Also if you wanna see your databases graphically you should install PG Commander.app. It's good way to see your postgres DB as pretty data-tables
Of, course, it's helpful only for local server. I will be glad if this instructions help others who has faced with this problem.
This problema has many sources, and thus many answers. I've experienced each one of them.
1) If you have a crash of some sort, removing the /usr/local/var/postgres/postmaster.pid file is probably required as postgres may not have handled it properly. But ensure that no process is running.
2) Craig Ringer has pointed out in other posts that Apple's bundling of postgreSQL leads to pg gem installation issues Setting the PATH environment variable is a solution.
3) Another solution, is to uninstall and reinstall the gem. A brew update may be necessary as well.
If you stumble upon this post, if you can pinpoint one of the sources, you'll save time...
I was facing a similar issue here I solved this issue as below.
Actually the postgres process is dead, to see the status of postgres run the following command
sudo /etc/init.d/postgres status
It will says the process is dead`just start the process
sudo /etc/init.d/postgres start
This happened to me after my Mac (High Sierra) froze and I had to manually restart it (press and hold the power button). All I had to do to fix it was do a clean restart.
I had the same issue.
Most of the times, the problem is the fact that there's a leftover file
/usr/local/var/postgres/postmaster.pid
which works for most people, but my case was different - I tried googling this issue for last 3 hours, uninstalled postresql on OSX through brew, purged the database, nothing worked.
Finally, I noticed that I had an issue with brew that whenever I tried to install anything, it popped:
Error: Permission denied # rb_sysopen - /private/tmp/github_api_....
or something like it at the end of an install.
I simply did sudo chmod -R 777 /private/tmp and it finally works!
I'm writing this down because this might be a solution for someone else
I faced the same problem for psql (PostgreSQL) 9.6.11.
what worked for me -
remove postmaster.pid -- rm /usr/local/var/postgresql#9.6/postmaster.pid
restart postgres -- brew services restart postgresql#9.6
If postmaster.pid doesn't exist or the above process doesn't work then run --
sudo chmod 700 /usr/local/var/postgresql#9.6
For those running into this issue on M1 macs, try deleting this file and then restarting the brew service:
rm /opt/homebrew/var/postgres/postmaster.pid
My problem ended up being that I was using Gas Mask (a hosts file manager for Mac), and I didn't have an entry for localhost in the hosts file I was using.
I added:
127.0.0.1 localhost
And that resolved my problem.
I'm not entirely sure why, but my Postgres installation got a little bit screwed and some files were deleted resulting in the error OP is showing.
Despite the fact that I am able to run commands like brew service retart postgres and see the proper messages, this error persisted.
I went through the postgres documentation and found that my file /usr/local/var/postgres was totally empty. So I ran the following:
initdb /usr/local/var/postgres
It seems some configurations took place with that command.
Then it asked me to run this:
postgres -D /usr/local/var/postgres
And that told me a postmaster.pid file already exists.
I just needed to know if brew would be able to pick up the configs I just ran, so I tested it out.
ls /usr/local/var/postgres
That showed me a postmaster.pid file. I then did brew services stop postgresql, and the postmaster.pid file disappeared. Then I did brew services start postgresql, and VIOLA, the file reappeared.
Then I went ahead and ran my app, which did in fact find the server, however my databases seem to be gone.
Although I know that they may not be gone at all - the new initialization I did may have created a new data_area, and the old one isn't being pointed to. I'd have to look at where that's at and point it back over or just create my databases again.
Hope this helps! Reading the postgres docs helped me a lot. I hate reading answers that are like "Paste this in it works!" because I don't know what the hell is happening and why.
I had the same issue and it was due to an incompatible version after upgrading from version 11 to 13.2
Checking error log at:
/usr/local/var/log/postgres.log
Showed me:
DETAIL: The data directory was initialized by PostgreSQL version 11, which is not compatible with this version 13.2.
To fix I ran:
brew postgresql-upgrade-database
And then started postresql with brew:
brew services start postgresql
The causes of this error are many so first locate your log file and check it for clues. It might be at /usr/local/var/log/postgres.log or /usr/local/var/postgres/server.log or possibly elsewhere. If you installed with Homebrew you can find the location in ~/Library/LaunchAgents/homebrew.mxcl.postgresql.plist.
I had this same concern when connecting trying to start a PostgreSQL database server on MacOS Monterey.
When I run the command below to restart the PostgreSQL database server:
brew services restart PostgreSQL
It restarts but when I try to check the status of the PostgreSQL database server using the command below, I get an error:
Name Status User File
mysql started promisepreston ~/Library/LaunchAgents/homebrew.mxcl.mysql.plist
nginx started promisepreston ~/Library/LaunchAgents/homebrew.mxcl.nginx.plist
postgresql error 256 root ~/Library/LaunchAgents/homebrew.mxcl.postgresql.plist
Here's what worked for me:
First, I checked the log file for the PostgreSQL database server to what was the cause of the error using the command below:
cat /usr/local/var/log/postgres.log
OR
nano /usr/local/var/log/postgres.log
The logs showed the following errors:
"root" execution of the PostgreSQL server is not permitted.
The server must be started under an unprivileged user ID to prevent
possible system security compromise. See the documentation for
more information on how to properly start the server.
2022-01-25 19:01:06.051 WAT [29053] FATAL: database files are incompatible with server
2022-01-25 19:01:06.051 WAT [29053] DETAIL: The data directory was initialized by PostgreSQL version 13, which is not compatible with this version 14.1.
For the root execution error I had to run the following command to fix file permissions that when messed us when I ran brew services with the sudo command prefix. Replace your-username with your MacOS username (in my case my username was promisepreston:
# Stop postgresql
sudo brew services stop PostgreSQL
# In case service file is copied to ~/Library/LaunchAgents as well
brew services stop postgresql
# Fix permission of homebrew files
sudo chown -R your-username:admin $(brew --prefix)/*
For the database files are incompatible with server I had to simply upgrade the existing PostgreSQL data files which were created using version 13 to the latest PostgreSQL version on my computer which was 14.1 by running the following command below:
brew postgresql-upgrade-database
Afterwhich, I restarted the PostgreSQL database server:
brew services restart PostgreSQL
And then checked the status using the command below:
brew services list
Then I got the output below showing that everything was working fine:
Name Status User File
mysql started promisepreston ~/Library/LaunchAgents/homebrew.mxcl.mysql.plist
nginx started promisepreston ~/Library/LaunchAgents/homebrew.mxcl.nginx.plist
postgresql started promisepreston ~/Library/LaunchAgents/homebrew.mxcl.postgresql.plist
References: Brew PostgreSQL Starts But Process Is Not Running
I had a similar error.
All of this is done from the command line (no sudo calls at all)
I verified I had PostgreSQL installed psql -V (note that's a capital "V")
I attempted to connect to the server: psql postgres
THIS IS WHERE I EXPERIENCED THE ERROR OF THIS STACK OVERFLOW QUESTION
After doing some research about possible fixes, I obviously had PostgreSQL installed, but I didn't have a default server in place.
What I had to do was create a Custom Data Directory
As far as I can tell, creating the custom data directory is the same as having a default server in place.
Since this is a new machine (MacBook Pro 2021 using apple m1 chip), I wanted to find the easiest solution possible, and I believe this Custom Data Directory is just that. The remaining steps to fix this issue are as follows:
From the home directory, I created an empty directory mkdir myData
From the home directory, Initialized a server: initdb myData (throws a bunch of files into the myData directory)
pg_ctl -D myData -l logfile start (starts the server)
psql postgres (connects to the server)
So, as someone fairly new to PostgreSQL and databases and SQL in general, couple notes:
It is possible to "quit" the connection to the server, using \q (while connected to the server, it's also possible to type "help")
It is also possible to "stop" the server, as well with pg_ctl -D myData stop
At this point I now am certain I have PostgreSQL installed, have a server I can start and stop, and have the ability to connect to/disconnect from, that server.
Go to /var/log/
and run cat postgres.log
Here you will find the reason for the failure of postgres.
If it is a smart shut down then probably your icu4c version (C++ library for Unicode) is not proper which is linked with postgres. So run the following commands.
brew upgrade
brew cleanup
This should work ;)
I've had to look up this post several times to solve this issue. There's another fix, which will also applies to similar issues with other running programs.
I just discovered you can use the following two commands.
$top
This will show all the currently running actions with their pid numbers. When you find postgres and the associated pid
$kill pid_number
I just got the same issue as I have put my machine(ubuntu) for update and got below error:
could not connect to server: No such file or directory Is the server
running locally and accepting connections on Unix domain socket
"/var/run/postgresql/.s.PGSQL.5432"?
After completing the updating process when I restart my system error gone. And its work like charm as before.. I guess this was happened as pg was updating and another process started.
SUPER NEWBIE ALERT: I'm just learning web development and the particular tutorial I was following mentioned I have to install Postgres but didn't actually mention I have to run it as well... Once I opened the Postgres application everything was fine and dandy.
#Jagdish Barabari's answer gave me the clue I needed to resolve this. Turns out there were two versions of postgresql installed while only one was running. Purging all postgresql files and reinstalling the latest version resolved this issue for me.
I removed /usr/lib from the LD_LIBRARY_PATH and it worked.
I was working in dockerfile postgres:alpine.
This answer worked for me: https://stackoverflow.com/a/45454567/15067545 on my ubuntu system.
Command: sudo service postgresql restart.

How to Create a configuration File For MongoDB

I have installed mongodb for mac os through 10gen and I have gone through the documentation to do so. Everything seems fine apart from the configuration file. I can not see it in /etc/mongod.config. Do I have to manually create this config file? And if so how can I go about it?
cheers
The default path for brew installed mongodb on Mac OS X is /usr/local/etc/mongod.conf
Unless you have installed a packaged version of MongoDB (for example, using Homebrew or Mac Ports) you will have to create a config file manually, or just pass the appropriate command line parameters when starting up MongoDB.
If you want a commented example of a config file to start with, the mongodb.conf in the Debian/Ubuntu package should be a good starting point. Important options to check are the dbpath and logpath which will likely be different for you.
It would also be worth looking at the Homebrew mongodb formula which includes setting up a LaunchAgent script to manage the mongod service.
Yes, unless you install via a package manager (like apt or yum on Linux) you have to create this manually. Then, When you start mongod you simply need to specify where the config file is, for example:
./mongod -f /path/to/mongod.conf
For how that file should look, just take a look here:
http://docs.mongodb.org/manual/reference/configuration-options/
You can also see the aforementioned Linux config files from the packages on github:
https://github.com/mongodb/mongo/blob/master/rpm/mongod.conf
https://github.com/mongodb/mongo/blob/master/debian/mongodb.conf
In the case you installed MongoDB without Homebrew, i.e. downloaded the TGZ package directly from MongoDB Download Center, you will can add the configuration file:
sudo nano /etc/mongod.conf
Please use only spaces (no tabs) in the file and leave a space after the key. For example:
security:
authorization: enabled
net:
port: 27017
bindIp: 0.0.0.0
And then run the instance with the configuration flag:
mongod -f /etc/mongod.conf
I wrote a post about installing MongoDB Community Edition directly from the TGZ archive.

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