I am trying to build a Fortran program, but I get errors about an undefined reference or an unresolved external symbol. I've seen another question about these errors, but the answers there are mostly specific to C++.
What are common causes of these errors when writing in Fortran, and how do I fix/prevent them?
This is a canonical question for a whole class of errors when building Fortran programs. If you've been referred here or had your question closed as a duplicate of this one, you may need to read one or more of several answers. Start with this answer which acts as a table of contents for solutions provided.
A link-time error like these messages can be for many of the same reasons as for more general uses of the linker, rather than just having compiled a Fortran program. Some of these are covered in the linked question about C++ linking and in another answer here: failing to specify the library, or providing them in the wrong order.
However, there are common mistakes in writing a Fortran program that can lead to link errors.
Unsupported intrinsics
If a subroutine reference is intended to refer to an intrinsic subroutine then this can lead to a link-time error if that subroutine intrinsic isn't offered by the compiler: it is taken to be an external subroutine.
implicit none
call unsupported_intrinsic
end
With unsupported_intrinsic not provided by the compiler we may see a linking error message like
undefined reference to `unsupported_intrinsic_'
If we are using a non-standard, or not commonly implemented, intrinsic we can help our compiler report this in a couple of ways:
implicit none
intrinsic :: my_intrinsic
call my_intrinsic
end program
If my_intrinsic isn't a supported intrinsic, then the compiler will complain with a helpful message:
Error: ‘my_intrinsic’ declared INTRINSIC at (1) does not exist
We don't have this problem with intrinsic functions because we are using implicit none:
implicit none
print *, my_intrinsic()
end
Error: Function ‘my_intrinsic’ at (1) has no IMPLICIT type
With some compilers we can use the Fortran 2018 implicit statement to do the same for subroutines
implicit none (external)
call my_intrinsic
end
Error: Procedure ‘my_intrinsic’ called at (1) is not explicitly declared
Note that it may be necessary to specify a compiler option when compiling to request the compiler support non-standard intrinsics (such as gfortran's -fdec-math). Equally, if you are requesting conformance to a particular language revision but using an intrinsic introduced in a later revision it may be necessary to change the conformance request. For example, compiling
intrinsic move_alloc
end
with gfortran and -std=f95:
intrinsic move_alloc
1
Error: The intrinsic ‘move_alloc’ declared INTRINSIC at (1) is not available in the current standard settings but new in Fortran 2003. Use an appropriate ‘-std=*’ option or enable ‘-fall-intrinsics’ in order to use it.
External procedure instead of module procedure
Just as we can try to use a module procedure in a program, but forget to give the object defining it to the linker, we can accidentally tell the compiler to use an external procedure (with a different link symbol name) instead of the module procedure:
module mod
implicit none
contains
integer function sub()
sub = 1
end function
end module
use mod, only :
implicit none
integer :: sub
print *, sub()
end
Or we could forget to use the module at all. Equally, we often see this when mistakenly referring to external procedures instead of sibling module procedures.
Using implicit none (external) can help us when we forget to use a module but this won't capture the case here where we explicitly declare the function to be an external one. We have to be careful, but if we see a link error like
undefined reference to `sub_'
then we should think we've referred to an external procedure sub instead of a module procedure: there's the absence of any name mangling for "module namespaces". That's a strong hint where we should be looking.
Mis-specified binding label
If we are interoperating with C then we can specify the link names of symbols incorrectly quite easily. It's so easy when not using the standard interoperability facility that I won't bother pointing this out. If you see link errors relating to what should be C functions, check carefully.
If using the standard facility there are still ways to trip up. Case sensitivity is one way: link symbol names are case sensitive, but your Fortran compiler has to be told the case if it's not all lower:
interface
function F() bind(c)
use, intrinsic :: iso_c_binding, only : c_int
integer(c_int) :: f
end function f
end interface
print *, F()
end
tells the Fortran compiler to ask the linker about a symbol f, even though we've called it F here. If the symbol really is called F, we need to say that explicitly:
interface
function F() bind(c, name='F')
use, intrinsic :: iso_c_binding, only : c_int
integer(c_int) :: f
end function f
end interface
print *, F()
end
If you see link errors which differ by case, check your binding labels.
The same holds for data objects with binding labels, and also make sure that any data object with linkage association has matching name in any C definition and link object.
Equally, forgetting to specify C interoperability with bind(c) means the linker may look for a mangled name with a trailing underscore or two (depending on compiler and its options). If you're trying to link against a C function cfunc but the linker complains about cfunc_, check you've said bind(c).
Not providing a main program
A compiler will often assume, unless told otherwise, that it's compiling a main program in order to generate (with the linker) an executable. If we aren't compiling a main program that's not what we want. That is, if we're compiling a module or external subprogram, for later use:
module mod
implicit none
contains
integer function f()
f = 1
end function f
end module
subroutine s()
end subroutine s
we may get a message like
undefined reference to `main'
This means that we need to tell the compiler that we aren't providing a Fortran main program. This will often be with the -c flag, but there will be a different option if trying to build a library object. The compiler documentation will give the appropriate options in this case.
There are many possible ways you can see an error like this. You may see it when trying to build your program (link error) or when running it (load error). Unfortunately, there's rarely a simple way to see which cause of your error you have.
This answer provides a summary of and links to the other answers to help you navigate. You may need to read all answers to solve your problem.
The most common cause of getting a link error like this is that you haven't correctly specified external dependencies or do not put all parts of your code together correctly.
When trying to run your program you may have a missing or incompatible runtime library.
If building fails and you have specified external dependencies, you may have a programming error which means that the compiler is looking for the wrong thing.
Not linking the library (properly)
The most common reason for the undefined reference/unresolved external symbol error is the failure to link the library that provides the symbol (most often a function or subroutine).
For example, when a subroutine from the BLAS library, like DGEMM is used, the library that provides this subroutine must be used in the linking step.
In the most simple use cases, the linking is combined with compilation:
gfortran my_source.f90 -lblas
The -lblas tells the linker (here invoked by the compiler) to link the libblas library. It can be a dynamic library (.so, .dll) or a static library (.a, .lib).
In many cases, it will be necessary to provide the library object defining the subroutine after the object requesting it. So, the linking above may succeed where switching the command line options (gfortran -lblas my_source.f90) may fail.
Note that the name of the library can be different as there are multiple implementations of BLAS (MKL, OpenBLAS, GotoBLAS,...).
But it will always be shortened from lib... to l... as in liopenblas.so and -lopenblas.
If the library is in a location where the linker does not see it, you can use the -L flag to explicitly add the directory for the linker to consider, e.g.:
gfortran -L/usr/local/lib -lopenblas
You can also try to add the path into some environment variable the linker searches, such as LIBRARY_PATH, e.g.:
export LIBRARY_PATH=$LIBRARY_PATH:/usr/local/lib
When linking and compilation are separated, the library is linked in the linking step:
gfortran -c my_source.f90 -o my_source.o
gfortran my_source.o -lblas
Not providing the module object file when linking
We have a module in a separate file module.f90 and the main program program.f90.
If we do
gfortran -c module.f90
gfortran program.f90 -o program
we receive an undefined reference error for the procedures contained in the module.
If we want to keep separate compilation steps, we need to link the compiled module object file
gfortran -c module.f90
gfortran module.o program.f90 -o program
or, when separating the linking step completely
gfortran -c module.f90
gfortran -c program.f90
gfortran module.o program.o -o program
Problems with the compiler's own libraries
Most Fortran compilers need to link your code against their own libraries. This should happen automatically without you needing to intervene, but this can fail for a number of reasons.
If you are compiling with gfortran, this problem will manifest as undefined references to symbols in libgfortran, which are all named _gfortran_.... These error messages will look like
undefined reference to '_gfortran_...'
The solution to this problem depends on its cause:
The compiler library is not installed
The compiler library should have been installed automatically when you installed the compiler. If the compiler did not install correctly, this may not have happened.
This can be solved by correctly installing the library, by correctly installing the compiler. It may be worth uninstalling the incorrectly installed compiler to avoid conflicts.
N.B. proceed with caution when uninstalling a compiler: if you uninstall the system compiler it may uninstall other necessary programs, and may render other programs unusable.
The compiler cannot find the compiler library
If the compiler library is installed in a non-standard location, the compiler may be unable to find it. You can tell the compiler where the library is using LD_LIBRARY_PATH, e.g. as
export LD_LIBRARY_PATH="/path/to/library:$LD_LIBRARY_PATH"
If you can't find the compiler library yourself, you may need to install a new copy.
The compiler and the compiler library are incompatible
If you have multiple versions of the compiler installed, you probably also have multiple versions of the compiler library installed. These may not be compatible, and the compiler might find the wrong library version.
This can be solved by pointing the compiler to the correct library version, e.g. by using LD_LIBRARY_PATH as above.
The Fortran compiler is not used for linking
If you are linking invoking the linker directly, or indirectly through a C (or other) compiler, then you may need to tell this compiler/linker to include the Fortran compiler's runtime library. For example, if using GCC's C frontend:
gcc -o program fortran_object.o c_object.o -lgfortran
/Oi allows the VC++ compiler to use intrinsics. What is the equivalent in gcc 9 or 10?
Would gcc -O3 compiler option enable the use of intrinsics?
What you are searching is Built-in Functions.
https://gcc.gnu.org/onlinedocs/gcc-4.9.2/gcc/Other-Builtins.html
Builtins are enabled by default :
-fno-builtin
-fno-builtin-function
Don’t recognize built-in functions that do not begin with ‘__builtin_’ as prefix. See Other built-in functions provided by GCC, for details of the functions affected, including those which are not built-in functions when -ansi or -std options for strict ISO C conformance are used because they do not have an ISO standard meaning.
GCC normally generates special code to handle certain built-in functions more efficiently; for instance, calls to alloca may become single instructions which adjust the stack directly, and calls to memcpy may become inline copy loops. The resulting code is often both smaller and faster, but since the function calls no longer appear as such, you cannot set a breakpoint on those calls, nor can you change the behavior of the functions by linking with a different library. In addition, when a function is recognized as a built-in function, GCC may use information about that function to warn about problems with calls to that function, or to generate more efficient code, even if the resulting code still contains calls to that function. For example, warnings are given with -Wformat for bad calls to printf when printf is built in and strlen is known not to modify global memory.
With the -fno-builtin-function option only the built-in function function is disabled. function must not begin with ‘__builtin_’. If a function is named that is not built-in in this version of GCC, this option is ignored. There is no corresponding -fbuiltin-function option; if you wish to enable built-in functions selectively when using -fno-builtin or -ffreestanding, you may define macros such as:
#define abs(n) __builtin_abs ((n))
#define strcpy(d, s) __builtin_strcpy ((d), (s))
https://gcc.gnu.org/onlinedocs/gcc/C-Dialect-Options.html#C-Dialect-Options
When you see the optimisations which turn on with O3, there is no mention of builtin. https://gcc.gnu.org/onlinedocs/gcc/Optimize-Options.html
Normally, I would compile a program that requires a specific library, e.g. math, by passing the linker flag after the sources that need it like so:
gcc foo.c -lm
However, it seems that older versions of gcc work equally well with the reverse order (let's call this BAD ORDER):
gcc -lm foo.c
I wouldn't worry about it if some popular open-source projects I'm trying to compile didn't use the latter while my version of gcc (or is it ld that's the problem?) work only in the former case (also, the correct one in my opinion).
My question is: when did the BAD ORDER stop working and why? It seems that not supporting it breaks legacy packages.
when did the BAD ORDER stop working and why? It seems that not supporting it breaks legacy packages.
When?
Not dead sure but I think pre-GCC 4.5. Long ago. Subsequently, the --as-needed option is operative for shared libraries by default,
so like static libraries, they must occur in the linkage sequence later than the objects for which they provide definitions.
This is a change in the default options that the gcc/g++/gfortran etc. tool-driver passes to ld.
Why?
It was considered confusing to inexpert users that static libraries by default has to appear
later that the objects to which they provided definitions while shared libraries by default did
not - the difference between the two typically being concealed by the -l<name> convention
for linking either libname.a or libname.so.
It was perhaps an unforeseen consequence that inexpert users who
had formerly had a lot of luck with the mistaken belief that a GCC
[compile and] link command conforms to the normal Unix pattern:
command [OPTION...] FILE [FILE...]
e.g.
gcc -lthis -lthat -o prog foo.o bar.o
now fare much worse with it.
I was told to post compiling questions on stackoverflow so this is the same question I've posted to Ubuntu Ask!:
I'm trying to compile a program that came with a Makefile. The makefile uses f77 and it seems that the programs call several f95 intrinsics. When I try to compile I get:
plotkit.a(userid.o): In function userid_':
fort77-5163-1.c:(.text+0x13e): undefined reference togetgid_' fort77-5163-1.c:(.text+0x234): undefined reference to `getuid_' collect2: error: ld returned 1 exit status
I also get the same error with fdate on another program in this distribution. I've tried to change the makefile to use different compilers such as gfortran) and they all cause MORE errors.
My question is how do I get getgid, getuid, and fdate to work with a f77 program? I'm additionally confused because there are getgid and getuid man pages but no installation on ubuntu?
I have a 64 bit 14.04 LTS installation.
Thanks for any ideas.
By default, gfortran (and other Fortran compilers) mangle procedure names by adding an underscore. When you reference getgid in source, the compiler changes that to getgid_. If the function getgid isn't defined in Fortran source, e.g. in C, then this will cause link errors such as the one you are encountering.
The functions getgid, getuid, etc are not Fortran functions, they are standard C library functions. If the code you are using is from somewhere else, look and see if the provided Makefiles have options listed to disable default underscoring by Fortran. For gfortran, this option is -fno-underscoring. Append this to the compiler flags used for the Fortran compiler in the makefile. For other Fortran compilers, consult their documentation for similar options.
If you aren't restricted to F77 and can make use of modern Fortran features, the other option is to fix this by providing interoperable interfaces for C library functions. e.g.
interface
function getgid() bind(C,name='getgid')
use iso_c_binding
implicit none
integer(c_int32_t) :: getgid
end function getgid
end interface
This will define an explicit interface for the C library function getgid so that you can call it from a modern Fortran implementation. You would define interfaces like this for each of the C library functions you need to call.
* As an aside, while the above interface works and is portable from a modern Fortran perspective, it isn't 100% portable from a C library perspective. The GNU implementation of getgid returns the type gid_t which though a long chain of typedefs is finally related to a true type in the files /usr/include/bits/types.h and /usr/include/bits/typesizes.h as an unsigned 32 bit integer. Fortran doesn't have unsigned types so while the storage sizes will match, if these functions ever return values above around 2 billion, they will be misinterpreted in Fortran as negative values. Also, since the storage type of gid_t is defined in the "bits" C header tree, they are potentially non-portable (not sure if the storage size is specified in POSIX or some other standard or implementation dependent).
Is there any way to tell the compiler (gcc/mingw32) when building an object file (lib*.o) to only expose certain functions from the .c file?
The reason I want to do this is that I am statically linking to a 100,000+ line library (SQLite), but am only using a select few of the functions it offers. I am hoping that if I can tell the compiler to only expose those functions, it will optimize out all the code of the functions that are never needed for those few I selected, thus dratically decreasing the size of the library.
I found several possible solutions:
This is what I asked about. It is the gcc equivalent of Windows' dllexpoort:
http://gcc.gnu.org/onlinedocs/gcc-4.6.1/gcc/Code-Gen-Options.html (-fvisibility)
http://gcc.gnu.org/wiki/Visibility
I also discovered link-time code-generation. This allows the linker to see what parts of the code are actually used and get rid of the rest. Using this together with strip and -fwhole-program has given me drastically better results.
http://gcc.gnu.org/onlinedocs/gcc-4.6.1/gcc/Optimize-Options.html (see -flto and -fwhole-program)
Note: This flag only makes sense if you are not compiling the whole program in one call to gcc, which is what I was doing (making a sqlite.o file and then statically linking it in).
The third option which I found but have not yet looked into is mentioned here:
How to remove unused C/C++ symbols with GCC and ld?
That's probably the linkers job, not the compilers. When linking that as a program (.exe), the linker will take care of only importing the relevant symbols, and when linking a DLL, the __dllexport mechanism is probably what you are looking for, or some flags of ld can help you (man ld).