I downloaded anaconda but when I click on the launcher application it doesn't open. I have tried to update it in terminal but it says command not found. How can I fix this?
In addition to fixing the path issues, as suggested by Thomas.
(Assuming you didn't press yes wen the installer asked if you wanted to prepend the Anaconda install location to your PATH)
It might just help to install the launcher:
>> conda install launcher
Anaconda Navigator stopped working after running TensorFlow script.
I reinstalled a new version of Anaconda. That did not fix the problem.
I followed a advice from:
https://github.com/ContinuumIO/anaconda-issues/issues/910
that did not fix the problem either.
Finally I tried this and it worked:
sudo rm -rf ~/.continuum/
Somehow ~/.continuum/ was owned by root.
In Windows, I used spyder directly from here:
C:\Program Files\Anaconda3\Scripts\spyder.exe
This is good to start coding.
Maybe the permission question, using the iterm run anaconda-navigator, you will get the error message.
If it's the permission question, just rename the permission file.
You should use this command:
python -m pip install jupyter notebook
then
just type:
jupyter notebook
it will work accurately.
I faced the same problem on my mac. Deleted the config.yaml file inside the binstar folder
/Users/<user_name>/Library/Application Support/binstar by using the command
rm -rf config.yaml
and it worked. I could open anaconda navigator.
Related
I just got an m1 Mac and installed anaconda using home-brew:
brew install anaconda
It looked like it worked great, except that when I actually go to use anaconda and type "conda" I get the dreaded "conda command not found" error. How do I fix this?
Based on the answer given by #Peter here as well as the anaconda documentation, adding to path is no longer recommended. The answers here also did not solve the problem.
Figured it out! Challenge lay in the home-brew path. To run the conda init zsh command, detailed by #Sebastian in the answer here, I had to specify home-brew, as well as back up a couple directories. The command that actually got it done in terminal was:
~/../../opt/homebrew/anaconda3/bin/conda init zsh
Happy home-brew anaconda-ing on your new m1s everyone.
Sorry if this is a stupid question. I use python/jupyter a lot and it's stopped working after updating from Mac OS High Sierra to Big Sur. I'm trying to figure out why, but I'm not great with command line stuff.
The problem. When I try python3, pip -v, conda, etc. it says "command not found". python still seems to run, but it's 2.7 and I know I had 3 (I probably had a few versions from untidy file systems). I want to avoid reinstalling all my packages and things again, because I know it's still there and I've done this a few times already.
Some clues. I know this OS upgrade moves me from bash to zsh. I've tried just switching back to bash with chsh -s /bin/zsh but it still says command not found. I also noticed the OS update creates a Mac HD (below System/Volumes) within my Mac HD, and in that second one seems to be still all my python3/conda/pip/etc. folders. Not sure if/how this matters. Or if this is just a path issue.
I just want to get Jupyter running again on my Mac without reinstalling all my myriad packages from square one. Any help appreciated!
After extreme toil and research, I finally found something that worked for me.
Find the location of your Anaconda3. For me it was in ~/opt/anaconda3
Open terminal and type source <location of anaconda3>/bin/activate and then in the next line, write conda init zsh
Close your terminal and open it again. You should see a prefix (base) when you open it again.
All in all, for me it was
rko3 ~ % source opt/anaconda3/bin/activate
rko3 ~ % conda init zsh
Let me know if this works for you!
PS. You may be tempted to change $PATH variables. Anaconda advises against that. Use this reference instead that suggests the above. https://docs.anaconda.com/anaconda/install/mac-os/
I've just resolved this exact issue on my machine after upgrading to Big Sur from Mojave.
The issue: MacOS, as of Catalina, no longer lets you use the system root folder. Anaconda used to install in this folder. After upgrading from Mojave to Big Sur, you'll likely find your anaconda3 folder, including all your environments and packages, located here: /System/Volumes/Data/anaconda3.
Here is what to do to fix it:
Open Terminal
Move the anaconda3 folder:
sudo mv /System/Volumes/Data/anaconda3 ~/
Download Anaconda's Conda Prefix Replacement (crp) tool:
curl -L https://repo.anaconda.com/pkgs/misc/cpr-exec/cpr-0.1.1-osx-64.exe -o cpr && chmod +x cpr
Run the CRP tool (this will take a few minutes):
./cpr rehome ~/anaconda3/
Source anacoda3
source ~/anaconda3/bin/activate
Initiate conda
conda init
Quit Terminal and open it again.
Edit: Someone didn't like that I ended this answer with "That's it! Enjoy". In the scenario described, the steps above were indeed all it took to resolve the issue. If you're experiencing the same issue, I hope this helps resolve it, so you can get back to enjoying your updated OS.
Seems like your environement is not activated. Zsh sources ~/.zshrc while bash sources ~/.bashrc.
You can copy lines related to conda from your ~/.bashrc to your ~/.zshrc.
AF
Open the Anaconda navigator and click on the Environments section. There you will see the base (root) and a green triangle next to it.
Click on the triangle and select Open Terminal.
Now, in the terminal you will be already in the necessary directory for anaconda and you can then update any packages.
For example, just by writing conda update --all you can update all packages available for updates.
I previously had Conda running smoothly on Mojave, but I've found that the upgrade to Catalina moves the "anaconda3" folder to your Desktop > Relocated Items > Security > anaconda3. It seems Catalina's security settings may not allow applications to install directly under the user directory anymore.
I tried the suggestion here, written below:
Hi, I might have a solution
Copy the folder anaconda3 located in Relocated Items to /Users/myname/
Open Terminal
Enter: export PATH=''/Users/myname/anaconda3/bin:$PATH"
Enter: conda init zsh
It worked! Good luck!
But this doesn't work for me. After conda init zsh I get:
-bash: /Users/USER/anaconda3/bin/conda: /anaconda3/bin/python: bad interpreter: No such file or directory
How can I get Conda up and running again without losing all my virtual environments? Thanks!
Update
I got Conda to work following #Ted Shaowang's suggestion. This means that conda env list shows all the virtual environments created via Conda.
However I am still experiencing an issue with virtualenv as since I changed the default anaconda3 file locations, python cannot be found.
The python executable located at .virtualenvs/env/bin/python cannot be found. Do I need to make further changes in order for python to work from virtualenv too?
I have the exact same problem and this works for me:
After you move anaconda from "Relocated Items" to ~/anaconda3, edit the first line of ~/anaconda3/bin/conda file from #!/anaconda3/bin/python to #!/Users/USERNAME/anaconda3/bin/python to reflect the change.
I would probably abstain from using the above solution. That ~/anaconda3/bin directory has lots of runnables (not just the conda one) that would need to be altered in this manual way. For example, unless you make the same change you cannot run jupyter notebook either, neither from base nor from other envs you might have.
My tip: Try getting a requirements file for your virtual envs, and do a fresh installation. You could use pipreqs to get the requirements used for individual projects: https://www.idiotinside.com/2015/05/10/python-auto-generate-requirements-txt/
No solution will be completely working without fixing the baked-in hard-coded prefix entries in files. There's a longer description and a recommended fix at https://www.anaconda.com/how-to-restore-anaconda-after-macos-catalina-update/
Technically this is reinstalling anaconda, however, I restored all my conda envs so, hopefully this is an acceptable solution!
Here is how I got it working on Catalina as of a few minutes ago (now using z-shell):
- Verified the existence of "Relocated Items" directory on my desktop and the "anaconda3" directory and its contents inside
- Navigated into the envs directory under "anaconda3" and left the finder window open (see screenshot)
THEN:
opened new Terminal (z-shell)
ran (this installed to /usr/local/anaconda3):
brew cask install anaconda
after installation was successful I opened my ~/.zshrc file (for my z-shell aliases) and added the following line:
export PATH="/usr/local/anaconda3/bin:$PATH"
saved my ~/.zshrc file, then reloaded with:
source ~/.zshrc
to verify conda command works now, I ran:
conda env list
for me, this showed a base env and that was it
then open Finder to the new envs location:
open /usr/local/anaconda3/envs/.
I dragged (moved) all my old envs into the new envs folder, and then ran:
conda env list
And all my old envs are back! :)
updated my PyCharm interpreter / env paths to reflect the new locations of these envs (had to restart PyCharm after, but now it works!)
DONE
Unsure whether this is considered a comment or at least a temporary answer, but I would refrain from attempting to fix any Catalina compatibility issues with Anaconda for now. See this GitHub issue.
I have the same problem, and this work for me :
My solution:
Copy your anaconda3 from Relocated Items folder
Paste in User/YourUserName
Open conda file in anaconda3/bin with the editor and edit the first line #!/anaconda3/bin/python to #!/Users/YourUserName/anaconda3/bin/python
Save it and run conda file
Open Terminal
Run this : export PATH=''/Users/YourUserName/anaconda3/bin:$PATH"
Run conda init zsh
I had incurred the same issue, and the following solution worked for me, and this is the easiest solution:
Instead of messing around copying the anaconda3 file from relocated items into User/USERNAME directory, better would be just to reinstall anaconda navigator's latest version from its official website : https://www.anaconda.com/distribution/#macos
While installation, it will ask you some permissions which are a result of new Apple Security Policies, just grant them, and it works just the way it should after this fresh installation!
This is what worked for me.
These are my header files (Catalina 10.15):
/Library/Developer/CommandLineTools/usr/include/c++/v1/stdio.h
/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include/sys/stdio.h
/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include/stdio.h
/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Kernel.framework/Versions/A/Headers/sys/stdio.h
/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/sys/stdio.h
/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/stdio.h
/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Kernel.framework/Versions/A/Headers/sys/stdio.h
Run sudo find /Library -name stdio.h to see where yours are located.
Mojave 10.14 header files:
$ sudo find /Library -name stdio.h
/Library/Developer/CommandLineTools/usr/include/c++/v1/stdio.h
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/stdio.h
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/Kernel.framework/Versions/A/Headers/sys/stdio.h
As can be seen the SDKs are now split into MACOSX10.14 and 10.15 unlike in Mojave.
TLDR
So, these were my SDK folders on Catalina:
Rename MacOSX.sdk to MacOSX_orig.sdk
Right click on MacOSX10.14.sdk
Duplicate
Rename duplicate folder to MacOSX.sdk
Your folder structure should now look like this:
Like this we are basically using the previous version's OSX sdk as sysroot. Hope this helps.
So I recently installed anaconda on my macOS and now that I'm trying to see if anaconda is working, I see that its not working... I typed
conda list
into terminal and it gives me this message:
:-bash: conda: command not found:
Im not sure exactly what to do, Thanks for the help!
Where's your anaconda installed? can you go to that folder and try it? you should see something like this:
packages in environment at /Users/.../anaconda:
if that doesn't work, can you try the GUI (Anaconda navigator) and see if it loads?
This is ubuntu16.04. I can open Anaconda-Navigator from the terminal using
anaconda-navigator, but when I click on it, it doesn't open. What am I missing?
To run anaconda-navigator:
$ source ~/anaconda3/bin/activate root
$ anaconda-navigator
Use the following command on your terminal (Ctrl + Alt + T):-
$ conda activate
$ anaconda-navigator
it works :
export PATH=/home/yourUserName/anaconda3/bin:$PATH
after that run anaconda-navigator command. remember anaconda can't in Sudo mode, so don't use sudo at all.
Simply create a new text document called "anaconda-navigator.desktop" in your home directory by the terminal command:
gedit anaconda-navigator.desktop
Then enter the following in your text document:
#!/usr/bin/env xdg-open
[Desktop Entry]
Name=Anaconda
Version=2.0
Type=Application
Exec=/path/to/anaconda-navigator
Icon=/path/to/selected/icon
Comment=Open Anaconda Navigator
Terminal=false
Save the file, then move it to your local applications folder:
mv anaconda-navigator.desktop ~/.local/share/applications/
Once this is done, you will be able to search for "Anaconda" on your applications screen, right click, and add to favorites. This way you don't have to go through the terminal every time!
Finished Product
I am using Ubuntu 16.04. When I installed anaconda I was facing the same problem. I tried this and it resolved my problem.
step 1 : $ conda install -c anaconda anaconda-navigator​
step 2 : $ anaconda-navigator
Hope it will help.
add anaconda installation path to .bashrc
export PATH="$PATH:/home/username/anaconda3/bin"
load in terminal
$ source ~/.bashrc
run from terminal
$ anaconda-navigator
Try this:
First go to the anaconda3 binaries directory by running
cd anaconda3/bin
and now use this following command to open the anaconda-navigator
./anaconda-navigator
If all the above methods are not working, you probably install anaconda with root privileges. Remove it with sudo rm -rf /root/anaconda3 and reinstall without sudo.
OPEN TERMINAL
export PATH=/home/yourUserName/anaconda3/bin:$PATH
anaconda-navigator
This will get you going! cheers!
By default anaconda is installed at /root/anaconda3 path, if you want to access it then you should run
su -
cd /root/anaconda3/bin
./jupyter-notebook or ./anaconda-navigator
If you want to change the path, just login as a admin and copy folder to /opt/ or reinstall it.
I am running Anaconda Navigator on Kubuntu 17.04 & getting a successful launch of the navigator window. Not knowing any of your error messages or statement; you could try reinstalling with command:
conda install -c anaconda anaconda-navigator
In my case, I don't need to set up anything further after installing Anaconda on Ubuntu
here is my screenshot for the version info.