Why does my GNU make Makefile build my library twice? - makefile

My GNU make Makefile:
# TODOs so I don't forget:
# - make debugging an option
# - make 64 below an actual option
# - figure out why make test seems to rebuild the DLL [note: this TODO is this question]
# - __declspec(dllimport)
ifeq ($(MAKECMDGOALS),64)
CC = x86_64-w64-mingw32-gcc
RC = x86_64-w64-mingw32-windres
mflag = -m64
else
CC = i686-w64-mingw32-gcc
RC = i686-w64-mingw32-windres
mflag = -m32
endif
OBJDIR = .objs
OUTDIR = out
BASENAME = wintable
DLLFILE = $(OUTDIR)/$(BASENAME).dll
LIBFILE = $(OUTDIR)/$(BASENAME).lib
TESTEXEFILE = $(OUTDIR)/$(BASENAME).exe
CFILES = \
alloc.c \
api.c \
checkboxdraw.c \
checkboxevents.c \
children.c \
coord.c \
debug.c \
draw.c \
enablefocus.c \
events.c \
header.c \
hscroll.c \
main.c \
metrics.c \
modelhelpers.c \
modelnotify.c \
nullmodel.c \
resize.c \
scroll.c \
select.c \
tooltips.c \
update.c \
util.c \
visibility.c \
vscroll.c
HFILES = \
table.h \
tablepriv.h
TESTCFILES = \
test.c
OFILES = $(CFILES:%.c=$(OBJDIR)/%.o)
TESTOFILES = $(TESTCFILES:%.c=$(OBJDIR)/%.o)
xCFLAGS = \
--std=c99 \
-Wall \
-Wextra \
-Wno-unused-parameter \
$(mflag) \
$(CFLAGS)
xLDFLAGS = \
-static-libgcc \
-luser32 -lkernel32 -lgdi32 -lcomctl32 -luxtheme -lole32 -loleaut32 -loleacc -luuid -lmsimg32 \
$(mflag) \
$(LDFLAGS)
default:
$(MAKE) clean
$(MAKE) it
$(MAKE) test
it: $(DLLFILE)
$(DLLFILE): $(OFILES)
$(CC) -g -o $(DLLFILE) -shared -Wl,--out-implib,$(LIBFILE) $(OFILES) $(xLDFLAGS)
test: $(TESTEXEFILE)
# see https://stackoverflow.com/a/29021641/3408572
.PHONY: test
$(TESTEXEFILE): $(DLLFILE) $(TESTOFILES)
$(CC) -g -o $(TESTEXEFILE) $(TESTOFILES) $(LIBFILE) $(xLDFLAGS)
$(OBJDIR)/%.o: %.c $(HFILES) dirs
$(CC) -g -o $# -c $< $(xCFLAGS)
dirs:
mkdir -p $(OBJDIR) $(OUTDIR)
clean:
rm -rf $(OBJDIR) $(OUTDIR)
I build with make and wanted to make cleaning and testing, which I do often, convenient, so for the moment my default cleans ($(MAKE) clean), builds the DLL ($(MAKE) it), and builds the test program ($(MAKE) test).
However, make does
make clean
make[1]: Entering directory '/home/pietro/src/github.com/andlabs/wintable'
rm -rf .objs out
make[1]: Leaving directory '/home/pietro/src/github.com/andlabs/wintable'
make it
make[1]: Entering directory '/home/pietro/src/github.com/andlabs/wintable'
mkdir -p .objs out
i686-w64-mingw32-gcc -g -o .objs/alloc.o -c alloc.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/api.o -c api.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/checkboxdraw.o -c checkboxdraw.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/checkboxevents.o -c checkboxevents.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/children.o -c children.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/coord.o -c coord.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/debug.o -c debug.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/draw.o -c draw.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/enablefocus.o -c enablefocus.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/events.o -c events.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/header.o -c header.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/hscroll.o -c hscroll.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/main.o -c main.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/metrics.o -c metrics.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/modelhelpers.o -c modelhelpers.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/modelnotify.o -c modelnotify.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/nullmodel.o -c nullmodel.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/resize.o -c resize.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/scroll.o -c scroll.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/select.o -c select.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/tooltips.o -c tooltips.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/update.o -c update.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/util.o -c util.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/visibility.o -c visibility.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/vscroll.o -c vscroll.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o out/wintable.dll -shared -Wl,--out-implib,out/wintable.lib .objs/alloc.o .objs/api.o .objs/checkboxdraw.o .objs/checkboxevents.o .objs/children.o .objs/coord.o .objs/debug.o .objs/draw.o .objs/enablefocus.o .objs/events.o .objs/header.o .objs/hscroll.o .objs/main.o .objs/metrics.o .objs/modelhelpers.o .objs/modelnotify.o .objs/nullmodel.o .objs/resize.o .objs/scroll.o .objs/select.o .objs/tooltips.o .objs/update.o .objs/util.o .objs/visibility.o .objs/vscroll.o -static-libgcc -luser32 -lkernel32 -lgdi32 -lcomctl32 -luxtheme -lole32 -loleaut32 -loleacc -luuid -lmsimg32 -m32
make[1]: Leaving directory '/home/pietro/src/github.com/andlabs/wintable'
make test
make[1]: Entering directory '/home/pietro/src/github.com/andlabs/wintable'
mkdir -p .objs out
i686-w64-mingw32-gcc -g -o .objs/alloc.o -c alloc.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/api.o -c api.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/checkboxdraw.o -c checkboxdraw.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/checkboxevents.o -c checkboxevents.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/children.o -c children.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/coord.o -c coord.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/debug.o -c debug.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/draw.o -c draw.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/enablefocus.o -c enablefocus.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/events.o -c events.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/header.o -c header.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/hscroll.o -c hscroll.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/main.o -c main.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/metrics.o -c metrics.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/modelhelpers.o -c modelhelpers.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/modelnotify.o -c modelnotify.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/nullmodel.o -c nullmodel.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/resize.o -c resize.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/scroll.o -c scroll.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/select.o -c select.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/tooltips.o -c tooltips.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/update.o -c update.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/util.o -c util.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/visibility.o -c visibility.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o .objs/vscroll.o -c vscroll.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o out/wintable.dll -shared -Wl,--out-implib,out/wintable.lib .objs/alloc.o .objs/api.o .objs/checkboxdraw.o .objs/checkboxevents.o .objs/children.o .objs/coord.o .objs/debug.o .objs/draw.o .objs/enablefocus.o .objs/events.o .objs/header.o .objs/hscroll.o .objs/main.o .objs/metrics.o .objs/modelhelpers.o .objs/modelnotify.o .objs/nullmodel.o .objs/resize.o .objs/scroll.o .objs/select.o .objs/tooltips.o .objs/update.o .objs/util.o .objs/visibility.o .objs/vscroll.o -static-libgcc -luser32 -lkernel32 -lgdi32 -lcomctl32 -luxtheme -lole32 -loleaut32 -loleacc -luuid -lmsimg32 -m32
i686-w64-mingw32-gcc -g -o .objs/test.o -c test.c --std=c99 -Wall -Wextra -Wno-unused-parameter -m32
i686-w64-mingw32-gcc -g -o out/wintable.exe .objs/test.o out/wintable.lib -static-libgcc -luser32 -lkernel32 -lgdi32 -lcomctl32 -luxtheme -lole32 -loleaut32 -loleacc -luuid -lmsimg32 -m32
make[1]: Leaving directory '/home/pietro/src/github.com/andlabs/wintable'
Notice how the $(MAKE) test step of that rebuilds the DLL as if the $(MAKE) it step didn't happen! There's no cleaning in between steps, and no other changes happen, so I don't know why the DLL is being rebuilt.
I thought making the default, it, clean, and dirs targets phony would fix it (as per one of my previous questions), but that didn't work. Google is only telling me how to tell make to build my target twice, not how to stop it from doing so.
This is GNU make 4.0 on Ubuntu GNOME 14.10.
What's going on? Thanks.
UPDATE 22 April 2015
I'm starting to think the problem is actually the one outlined here since I'm seeing similar rebuilding issues on other projects I have that don't do the make test thing I'm doing here:
This works well for this simple example, but there\'s a major problem. Since the timestamp on a directory is typically updated when any of the files inside the directory are updated this Makefile does too much work.
For example, just touching a random file inside /out/ forces a rebuild of /out/foo.o. In a complex example this could mean that many object files are rebuilt for no good reason, just because other files were rebuilt in the same directory.
I'll confirm that this is actually the case and provide an answer when appropriate.

The problem is you're using make -n, which doesn't actually do anything, combined with recursive invocations of make. The make -n it command invokes a sub-make which pretends to build everything, but doesn't actually build anything. Then that instance of make exits, and all its internal knowledge about targets it pretended to build but didn't actually build are lost when it exits.
Then you start a new make -n test which depends on those same targets, which still don't exist, but this new make instance has no idea that the previous instance pretended to build them already.
If you run a real make, not make -n, then you shouldn't see this rebuild.
If you want make -n to work in this situation, you can't run make recursively.
ETA: Your other problem is that all your object files depend on the dirs target, but that target never exists (there's never a file named dirs). So when make starts up it sees that dirs doesn't exist and runs the rule to build it, then assumes that all the targets that depend on that target are out of date and rebuilds them. Then the next time make is invoked, it sees that dirs doesn't exist and runs the rule to build it, then assumes that all the targets that depend on that target are out of date and rebuilds them... etc.

Okay, turns out it's exactly as it was: the directory modification time had changed, so make thought to build everything again. Using an order-only prerequisite worked. Thanks anyway!

Related

Error installing Mike's Arbitrary Precision Math Library (MAPM)

Please I need help, I need to install this library quickly for a project I am working on (https://github.com/LuaDist/mapm) and I don't understand makefile. Per the instructions I run the command "make" and get the following output:
gcc -c -Wall -O2 mapmhsin.c
gcc -c -Wall -O2 mapm_pow.c
gcc -c -Wall -O2 mapm_log.c
gcc -c -Wall -O2 mapm_lg2.c
gcc -c -Wall -O2 mapm_lg4.c
gcc -c -Wall -O2 mapm_exp.c
gcc -c -Wall -O2 mapm_lg3.c
gcc -c -Wall -O2 mapmasin.c
gcc -c -Wall -O2 mapmasn0.c
gcc -c -Wall -O2 mapm_sin.c
gcc -c -Wall -O2 mapm5sin.c
gcc -c -Wall -O2 mapmrsin.c
gcc -c -Wall -O2 mapm_cpi.c
gcc -c -Wall -O2 mapmsqrt.c
gcc -c -Wall -O2 mapmcbrt.c
gcc -c -Wall -O2 mapmgues.c
gcc -c -Wall -O2 mapmfact.c
gcc -c -Wall -O2 mapm_gcd.c
gcc -c -Wall -O2 mapmipwr.c
gcc -c -Wall -O2 mapmpwr2.c
gcc -c -Wall -O2 mapm_rnd.c
gcc -c -Wall -O2 mapm_flr.c
gcc -c -Wall -O2 mapm_fpf.c
gcc -c -Wall -O2 mapm_rcp.c
gcc -c -Wall -O2 mapmstck.c
gcc -c -Wall -O2 mapm_div.c
gcc -c -Wall -O2 mapm_mul.c
gcc -c -Wall -O3 mapmfmul.c
gcc -c -Wall -O2 mapm_fft.c
gcc -c -Wall -O2 mapm_add.c
gcc -c -Wall -O2 mapmistr.c
gcc -c -Wall -O2 mapm_set.c
gcc -c -Wall -O2 mapm_fam.c
gcc -c -Wall -O3 mapmutil.c
gcc -c -Wall -O2 mapmutl2.c
gcc -c -Wall -O2 mapmutl1.c
gcc -c -Wall -O2 mapmcnst.c
rm -f libmapm.a
ar rc libmapm.a mapmhasn.o mapmhsin.o mapm_pow.o mapm_log.o mapm_lg2.o mapm_lg4.o mapm_exp.o mapm_lg3.o mapmasin.o mapmasn0.o mapm_sin.o mapm5sin.o mapmrsin.o mapm_cpi.o mapmsqrt.o mapmcbrt.o mapmgues.o mapmfact.o mapm_gcd.o mapmipwr.o mapmpwr2.o mapm_rnd.o mapm_flr.o mapm_fpf.o mapm_rcp.o mapmstck.o mapm_div.o mapm_mul.o mapmfmul.o mapm_fft.o mapm_add.o mapmistr.o mapm_set.o mapm_fam.o mapmutil.o mapmutl2.o mapmutl1.o mapmcnst.o
gcc -c -Wall -O2 calc.c
gcc -s -static -o calc calc.o libmapm.a -lm
/usr/bin/ld: cannot find -lm
/usr/bin/ld: cannot find -lc
collect2: error: ld returned 1 exit status
make: *** [Makefile:63: calc] Error 1
It looks like everything goes fine until the end:
/usr/bin/ld: cannot find -lm
/usr/bin/ld: cannot find -lc
collect2: error: ld returned 1 exit status
Is there any way I fix this, and what does the command -lm and -lc do?

how can I fix gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS to install bwa

I am trying to install bwa package in the terminal of mac. I downloaded bwa-0.7.17 from https://sourceforge.net/projects/bio-bwa/files/
I followed the steps to install it but when I tried to "make", it showed me this:
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS utils.c -o utils.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS kthread.c -o kthread.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS kstring.c -o kstring.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS ksw.c -o ksw.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwt.c -o bwt.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bntseq.c -o bntseq.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwa.c -o bwa.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwamem.c -o bwamem.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwamem_pair.c -o bwamem_pair.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwamem_extra.c -o bwamem_extra.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS malloc_wrap.c -o malloc_wrap.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS QSufSort.c -o QSufSort.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwt_gen.c -o bwt_gen.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS rope.c -o rope.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS rle.c -o rle.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS is.c -o is.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtindex.c -o bwtindex.o
ar -csru libbwa.a utils.o kthread.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o bwamem_extra.o malloc_wrap.o QSufSort.o bwt_gen.o rope.o rle.o is.o bwtindex.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwashm.c -o bwashm.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwase.c -o bwase.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwaseqio.c -o bwaseqio.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtgap.c -o bwtgap.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtaln.c -o bwtaln.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bamlite.c -o bamlite.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwape.c -o bwape.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS kopen.c -o kopen.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS pemerge.c -o pemerge.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS maxk.c -o maxk.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtsw2_core.c -o bwtsw2_core.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtsw2_main.c -o bwtsw2_main.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtsw2_aux.c -o bwtsw2_aux.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwt_lite.c -o bwt_lite.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtsw2_chain.c -o bwtsw2_chain.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS fastmap.c -o fastmap.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtsw2_pair.c -o bwtsw2_pair.o
gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS main.c -o main.o
gcc -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwashm.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o bwape.o kopen.o pemerge.o maxk.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o fastmap.o bwtsw2_pair.o main.o -o bwa -L. -lbwa -lm -lz -lpthread
Then I tried again "make" and it showed:
make: Nothing to be done for `all'
Do you know what is the problem and how can I fix it? I would really appreciate your help.
All the best,
Mayra

Why are there 2 generated linker scripts by STM32CubeIDE?

I'm learning STM32 bare metal programming and in that quest I'm using STM32F429ZI mcu. I read a lot of examples on the internet and all of them use only one linker script. I'm thinking if these examples perfected for my MCU then the linker script will be the same as one(s) that is generated by STM32CubeIDE in term of functionality (?).
Now here my question, when I generated my project using STM32CubeIDE I got 2 linker scripts, STM32F429ZITX_FLASH.ld and STM32F429ZITX_RAM.ld but when I checked the build log only one linker script is used which is STM32F429ZITX_FLASH.ld . Do STM32CubeIDE use one or two linker scripts to build the project? If it uses only one, then why did it generate two linker scripts?
Below, I've posted the build log. Here's the piece of command I found in the build log:
arm-none-eabi-gcc -o "STM32F429ZI-Test.elf" #"objects.list" -mcpu=cortex-m4 -T"/home/biomed/STM32CubeIDE/workspace_1.4.0/STM32F429ZI-Test/STM32F429ZITX_FLASH.ld"
arm-none-eabi-gcc -o "STM32F429ZI-Test.elf" #"objects.list" -mcpu=cortex-m4 -T"/home/biomed/STM32CubeIDE/workspace_1.4.0/STM32F429ZI-Test/STM32F429ZITX_FLASH.ld"
14:10:36 **** Build of configuration Debug for project STM32F429ZI-Test ****
make -j8 all
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_cortex.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_cortex.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_cortex.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_cortex.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_dma.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_dma.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_dma.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_dma.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_dma_ex.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_dma_ex.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_dma_ex.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_dma_ex.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_exti.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_exti.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_exti.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_exti.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_flash.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_flash.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_flash.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_flash.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_flash_ex.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_flash_ex.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_flash_ex.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_flash_ex.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_flash_ramfunc.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_flash_ramfunc.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_flash_ramfunc.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_flash_ramfunc.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_gpio.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_gpio.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_gpio.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_gpio.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_pwr.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_pwr.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_pwr.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_pwr.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_pwr_ex.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_pwr_ex.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_pwr_ex.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_pwr_ex.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_rcc.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_rcc.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_rcc.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_rcc.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_rcc_ex.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_rcc_ex.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_rcc_ex.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_rcc_ex.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_tim.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_tim.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_tim.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_tim.o"
arm-none-eabi-gcc "../Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_tim_ex.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_tim_ex.d" -MT"Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_tim_ex.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Drivers/STM32F4xx_HAL_Driver/Src/stm32f4xx_hal_tim_ex.o"
arm-none-eabi-gcc -mcpu=cortex-m4 -g3 -c -x assembler-with-cpp -MMD -MP -MF"Core/Startup/startup_stm32f429zitx.d" -MT"Core/Startup/startup_stm32f429zitx.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Core/Startup/startup_stm32f429zitx.o" "../Core/Startup/startup_stm32f429zitx.s"
arm-none-eabi-gcc "../Core/Src/main.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Core/Src/main.d" -MT"Core/Src/main.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Core/Src/main.o"
arm-none-eabi-gcc "../Core/Src/stm32f4xx_hal_msp.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Core/Src/stm32f4xx_hal_msp.d" -MT"Core/Src/stm32f4xx_hal_msp.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Core/Src/stm32f4xx_hal_msp.o"
arm-none-eabi-gcc "../Core/Src/stm32f4xx_it.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Core/Src/stm32f4xx_it.d" -MT"Core/Src/stm32f4xx_it.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Core/Src/stm32f4xx_it.o"
arm-none-eabi-gcc "../Core/Src/syscalls.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Core/Src/syscalls.d" -MT"Core/Src/syscalls.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Core/Src/syscalls.o"
arm-none-eabi-gcc "../Core/Src/sysmem.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Core/Src/sysmem.d" -MT"Core/Src/sysmem.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Core/Src/sysmem.o"
arm-none-eabi-gcc "../Core/Src/system_stm32f4xx.c" -mcpu=cortex-m4 -std=gnu11 -g3 -DUSE_HAL_DRIVER -DDEBUG -DSTM32F429xx -c -I../Core/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc -I../Drivers/STM32F4xx_HAL_Driver/Inc/Legacy -I../Drivers/CMSIS/Device/ST/STM32F4xx/Include -I../Drivers/CMSIS/Include -O0 -ffunction-sections -fdata-sections -Wall -fstack-usage -MMD -MP -MF"Core/Src/system_stm32f4xx.d" -MT"Core/Src/system_stm32f4xx.o" --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -o "Core/Src/system_stm32f4xx.o"
arm-none-eabi-gcc -o "STM32F429ZI-Test.elf" #"objects.list" -mcpu=cortex-m4 -T"/home/biomed/STM32CubeIDE/workspace_1.4.0/STM32F429ZI-Test/STM32F429ZITX_FLASH.ld" --specs=nosys.specs -Wl,-Map="STM32F429ZI-Test.map" -Wl,--gc-sections -static --specs=nano.specs -mfpu=fpv4-sp-d16 -mfloat-abi=hard -mthumb -Wl,--start-group -lc -lm -Wl,--end-group
Finished building target: STM32F429ZI-Test.elf
arm-none-eabi-size STM32F429ZI-Test.elf
arm-none-eabi-objdump -h -S STM32F429ZI-Test.elf > "STM32F429ZI-Test.list"
arm-none-eabi-objcopy -O binary STM32F429ZI-Test.elf "STM32F429ZI-Test.bin"
text data bss dec hex filename
4672 20 1572 6264 1878 STM32F429ZI-Test.elf
Finished building: default.size.stdout
Finished building: STM32F429ZI-Test.bin
Finished building: STM32F429ZI-Test.list
14:10:39 Build Finished. 0 errors, 0 warnings. (took 2s.744ms)
Do STM32CubeIDE use one or two linker scripts to build the project?
One.
Why are there 2 generated linker scripts by STM32CubeIDE?
If it uses only one, then why did it generate two linker scripts?
If you would want to execute (mostly for debugging) a program from RAM, you could use the second linker script, that places .data in RAM only. CubeMX generates two, linker scripts so that you can use the second one if you have the need to.

Building a Window exe using MinGW, Windows-7 in virtual machine

I'm working in Windows 7, 64 bit, running in a Virtual Box machine on a (recent-ish) Mac with Intel processor.
I have MinGW installed:
gcc -dumpmachine
>>> x86_64-w64-mingw32
I am trying to compile a Windows exe for this code (Landsat-8 routines for solar and satellite angle calculations):
gcc -I ias_lib -o l8_angle.exe -c l8_angle.c
which gives me no errors or warnings when run, and creates l8_angle.exe as expected. When opened, the exe gives:
The version of this file is not compatible with the version of Windows
you're running. Check your computer's system information to see
whether you need an x86 (32-bit) for x64 (64-bit) version of the
program, and then contact the software publisher.
Is it possible to compile this program on my setup?
If you're wondering I can run make on the Mac OS side to get a Linux executable, but I need a Windows executable for my production machine.
I was able to compile successully by echoing the gcc statements in both makefiles:
#echo $(value INCS)
which for some reasom prints the completely assembled gcc command. I then confirmed what the selected flags did and saw that they were all equally appropriate for a Windows build.
The build commands were then:
cd ias_lib
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_angle_gen_calculate_angles_rpc.c -o ias_angle_gen_calculate_angles_rpc.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_angle_gen_read_ang.c -o ias_angle_gen_read_ang.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_angle_gen_utilities.c -o ias_angle_gen_utilities.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_angle_gen_initialize.c -o ias_angle_gen_initialize.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_angle_gen_write_image.c -o ias_angle_gen_write_image.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_angle_gen_find_scas.c -o ias_angle_gen_find_scas.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_geo_convert_dms2deg.c -o ias_geo_convert_dms2deg.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_math_compute_unit_vector.c -o ias_math_compute_unit_vector.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_math_compute_vector_length.c -o ias_math_compute_vector_length.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_math_find_line_segment_intersection.c -o ias_math_find_line_segment_intersection.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_logging.c -o ias_logging.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_misc_create_output_image_trim_lut.c -o ias_misc_create_output_image_trim_lut.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_misc_convert_to_uppercase.c -o ias_misc_convert_to_uppercase.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_misc_write_envi_header.c -o ias_misc_write_envi_header.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_odl_free_tree.c -o ias_odl_free_tree.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_odl_get_field.c -o ias_odl_get_field.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_odl_read_tree.c -o ias_odl_read_tree.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_parm_provide_help.c -o ias_parm_provide_help.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_parm_read.c -o ias_parm_read.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_parm_map_odl_type.c -o ias_parm_map_odl_type.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_parm_check_ranges.c -o ias_parm_check_ranges.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c ias_satellite_attributes.c -o ias_satellite_attributes.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c landsat8.c -o landsat8.o
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -c lablib3.c -o lablib3.o
ar -r libl8ang.a ias_angle_gen_calculate_angles_rpc.o ias_angle_gen_read_ang.o ias_angle_gen_utilities.o ias_angle_gen_initialize.o ias_angle_gen_write_image.o ias_angle_gen_find_scas.o ias_geo_convert_dms2deg.o ias_math_compute_unit_vector.o ias_math_compute_vector_length.o ias_math_find_line_segment_intersection.o ias_logging.o ias_misc_create_output_image_trim_lut.o ias_misc_convert_to_uppercase.o ias_misc_write_envi_header.o ias_odl_free_tree.o ias_odl_get_field.o ias_odl_read_tree.o ias_parm_provide_help.o ias_parm_read.o ias_parm_map_odl_type.o ias_parm_check_ranges.o ias_satellite_attributes.o landsat8.o lablib3.o
cd ..
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -I./ias_lib/ -I./ -c -o l8_angles.o l8_angles.c
gcc -g -Wall -O2 -march=nocona -mfpmath=sse -msse2 -I./ias_lib/ -I./ -c -o angles_api.o angles_api.c
gcc -g -Wall -O2 -I./ias_lib/ -I./ -o l8_angles.exe ias_lib/libl8ang.a l8_angles.o angles_api.o -L./ias_lib/ -ll8ang -lm
where the only change was in the final line, l8_angles.exe rather than l8_angles. If anyone has a more straightforward way, I would love to see it.

generic makefile to create multiple executable using different flags

I would like to create a generic Makefile that builds several executables using different compiler flags for each executable without using shell commands. The executable file name should be composed from the source file and a unique post fixed name. It should also produce an assembly or preprocessor file per source file if needed.
For the target BIN_BDG_FILES, the "$<" (exercise-1.1.0.c ) is always the first item from the list (exercise-1.1.0.c exercise-1.1.1.c exercise-1.2.0.c exercise-1.2.1.c) as expected. I tried without success to modify the SRC_FILES using the filter-out function. My intent was to remove the first item from the list for each Target, so that the first item corresponds to the correct target. I am not sure this is the correct approach. Your comments are welcome.
i.e.
This is my attempt at using built in make constructs.
$(BIN_DBG_FILES): $(SRC_FILES)
$(CC) $(DBG_CFLAGS) $(IFLAGS) $< -o $#
echo SRC_FILES := $(filter-out $<, $(SRC_FILES))
Makefile
SHELL = bash
SRC_FILES = $(wildcard *.c)
BIN_FILES = $(patsubst %.c,%,$(SRC_FILES))
BIN_DBG_FILES = $(patsubst %.c,%-dbg,$(SRC_FILES))
SRC_PRE = $(patsubst %.c,%-pre,$(SRC_FILES))
CC = gcc
WARNINGS := -Wall
CFLAGS = -O2 -std=c99 $(WARNINGS)
DBG_CFLAGS = -g -O -std=c99 $(WARNINGS)
PRE_FLAG = -E
IFLAGS = -I.
all: $(BIN_FILES) $(BIN_DBG_FILES) MK-BASH
$(BIN_DBG_FILES): $(SRC_FILES)
$(CC) $(DBG_CFLAGS) $(IFLAGS) $< -o $#
MK-BASH::
for src in $(SRC_FILES); do \
echo $(CC) $(DBG_CFLAGS) $(IFLAGS) $$src -o $${src%.c}-dbg; \
$(CC) $(DBG_CFLAGS) $(IFLAGS) $$src -o $${src%.c}-dbg; \
$(CC) $(DBG_CFLAGS) $(IFLAGS) $$src -o $${src%.c}-dbg; \
$(CC) $(PRE_FLAG) $$src > $${src%.c}-pre; \
done
clean:
rm -f $(BIN_FILES) *-dbg *-pre
This is the output from executing make command.
This is the output from the target BIN_FILES.
gcc -O2 -std=c99 -Wall exercise-1.1.0.c -o exercise-1.1.0
gcc -O2 -std=c99 -Wall exercise-1.1.1.c -o exercise-1.1.1
gcc -O2 -std=c99 -Wall exercise-1.2.0.c -o exercise-1.2.0
gcc -O2 -std=c99 -Wall exercise-1.2.1.c -o exercise-1.2.1
This is the output from target BIN_DBG_FILES which uses the first source file on the list to build all targets. It should use the appropriate file (exercise-1.1.1.c) to build each target file (exercise-1.1.1-dbg).
gcc -g -O -std=c99 -Wall -I. **exercise-1.1.0.c** -o exercise-1.1.0-dbg
gcc -g -O -std=c99 -Wall -I. **exercise-1.1.0.c** -o exercise-1.1.1-dbg
gcc -g -O -std=c99 -Wall -I. **exercise-1.1.0.c** -o exercise-1.2.0-dbg
gcc -g -O -std=c99 -Wall -I. **exercise-1.1.0.c** -o exercise-1.2.1-dbg
This is the output from the target MK-BASH using shell commands.
for src in exercise-1.1.0.c exercise-1.1.1.c exercise-1.2.0.c exercise-1.2.1.c; do \
echo gcc -g -O -std=c99 -Wall -I. $src -o ${src%.c}-dbg; \
gcc -g -O -std=c99 -Wall -I. $src -o ${src%.c}-dbg; \
gcc -g -O -std=c99 -Wall -I. $src -o ${src%.c}-dbg; \
gcc -E $src > ${src%.c}-pre; \
done
output:
gcc -g -O -std=c99 -Wall -I. exercise-1.1.0.c -o exercise-1.1.0-dbg
gcc -g -O -std=c99 -Wall -I. exercise-1.1.1.c -o exercise-1.1.1-dbg
gcc -g -O -std=c99 -Wall -I. exercise-1.2.0.c -o exercise-1.2.0-dbg
gcc -g -O -std=c99 -Wall -I. exercise-1.2.1.c -o exercise-1.2.1-dbg
Use a pattern rule:
DBG: $(BIN_DBG_FILES)
%-dbg: %.c
#echo $(CC) $(DBG_CFLAGS) $(IFLAGS) $< -o $#

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