I'm running Spark on AWS EMR and I'm having some issues getting the correct permissions on the output files (rdd.saveAsTextFile('<file_dir_name>')). In hive, I would add a line in the beginning with set fs.s3.canned.acl=BucketOwnerFullControl and that would set the correct permissions. For Spark, I tried running:
hadoop jar /mnt/var/lib/hadoop/steps/s-3HIRLHJJXV3SJ/script-runner.jar \
/home/hadoop/spark/bin/spark-submit --deploy-mode cluster --master yarn-cluster \
--conf "spark.driver.extraJavaOptions -Dfs.s3.canned.acl=BucketOwnerFullControl" \
hdfs:///user/hadoop/spark.py
But the permissions do not get set properly on the output files. What is the proper way to pass in the 'fs.s3.canned.acl=BucketOwnerFullControl' or any of the S3 canned permissions to the spark job?
Thanks in advance
I found the solution. In the job, you have to access the JavaSparkContext and from there get the Hadoop configuration and set the parameter there. For example:
sc._jsc.hadoopConfiguration().set('fs.s3.canned.acl','BucketOwnerFullControl')
The proper way to pass hadoop config keys in spark is to use --conf with keys prefixed with spark.hadoop.. Your command would look like
hadoop jar /mnt/var/lib/hadoop/steps/s-3HIRLHJJXV3SJ/script-runner.jar \
/home/hadoop/spark/bin/spark-submit --deploy-mode cluster --master yarn-cluster \
--conf "spark.hadoop.fs.s3.canned.acl=BucketOwnerFullControl" \
hdfs:///user/hadoop/spark.py
Unfortunately I cannot find any reference in official documentation of spark.
Related
I'm trying to switch cluster manager from standalone to 'YARN' in Apache Spark that I've installed for learning.
I read following thread to understand which cluster type should be chosen
However, I'd like to know the steps/syntax to change the cluster type.
Ex: from Standalone to YARN or from YARN to Standalone.
In spark there is one function name as --master that can helps you to execute your script on yarn Cluster mode or standalone mode.
Run the application on local mode or standalone used this with spark-submit command
--master Local[*]
or
--master spark://192.168.10.01:7077 \
--deploy-mode cluster \
Run on a YARN cluster
--master yarn
--deploy-mode cluster
For more information kindly visit this link.
https://spark.apache.org/docs/latest/submitting-applications.html
If you are not running through command line then you can directly set this master on SparkConf object.
sparkConf.setMaster(http://path/to/master/url:port) in cluster mode
or
sparkConf.setMaster(local[*]) in client/local mode
Through tinkering I have been able to partially launch a spark submit job using the following command, however soon after starting it crashes and gives me the exception outlined below:
Spark-Submit Command:
su spark -c 'export SPARK_MAJOR_VERSION=2; spark-submit \
--verbose \
--master yarn \
--driver-cores 5 \
--num-executors 3 --executor-cores 6 \
--principal spark#test.com \
--keytab /etc/security/keytabs/spark.headless.keytab \
--driver-java-options "-Djava.security.auth.login.config=kafka_client_jaas.conf"\
--conf "spark.executor.extraJavaOptions=-Djava.security.auth.login.config=kafka_client_jaas.conf" \
--files "/tmp/kafka_client_jaas.conf,/tmp/kafka.service.keytab" \
--class au.com.XXX.XXX.spark.test.test test.jar application.properties'
EXCEPTION:
Caused by: org.apache.kafka.common.KafkaException: javax.security.auth.login.LoginException: Could not login: the client is being asked for a password, but the Kafka client code does not currently support obtaining a password from the user. not available to garner authentication information from the user
WARN KerberosLogin: [Principal=kafka/test.com#test.com]: TGT renewal thread has been interrupted and will exit.
How can I get Kerberos to KINIT two principals at the same time? I'm assuming that is the problem here? I have tried adding another set of --principal/--keytab to the initial command, although this presented more permission issues within HDFS.
It's an old thread, but I struggled with this for some time and hopefully this can help someone.
The possible cause is that the Spark executors are not being able to locate the keytab, so they are failling to authenticate to Kerberos. On your submit, you should pass your Jaas config and Keytab files to your executors using the following options:
spark-submit --master yarn --deploy-mode cluster --files /path/to/keytab/yourkeytab.keytab#yourkeytab.keytab,/path/to/jaas/your-kafka-jaas.conf#your-kafka-jaas.conf --conf "spark.driver.extraJavaOptions=-Djava.security.auth.login.config=your-kafka-jaas.conf" --conf "spark.executor.extraJavaOptions=-Djava.security.auth.login.config=your-kafka-jaas.conf" --driver-java-options "-Djava.security.auth.login.config=your-kafka-jaas.conf" your-application.jar
Finally, since these jaas files are being sent to executors (and the spark driver), you should use the relative path for the Keytab, and not the absolute. Your jaas config then should have the following line:
keyTab="./yourkeytab.keytab"
I'm trying to run a spark application using bin/spark-submit. When I reference my application jar inside my local filesystem, it works. However, when I copied my application jar to a directory in hdfs, i get the following exception:
Warning: Skip remote jar hdfs://localhost:9000/user/hdfs/jars/simple-project-1.0-SNAPSHOT.jar.
java.lang.ClassNotFoundException: com.example.SimpleApp
Here's the command:
$ ./bin/spark-submit --class com.example.SimpleApp --master local hdfs://localhost:9000/user/hdfs/jars/simple-project-1.0-SNAPSHOT.jar
I'm using hadoop version 2.6.0, spark version 1.2.1
The only way it worked for me, when I was using
--master yarn-cluster
To make HDFS library accessible to spark-job , you have to run job in cluster mode.
$SPARK_HOME/bin/spark-submit \
--deploy-mode cluster \
--class <main_class> \
--master yarn-cluster \
hdfs://myhost:8020/user/root/myjar.jar
Also, There is Spark JIRA raised for client mode which is not supported yet.
SPARK-10643 :Support HDFS application download in client mode spark submit
There is a workaround. You could mount the directory in HDFS (which contains your application jar) as local directory.
I did the same (with azure blob storage, but it should be similar for HDFS)
example command for azure wasb
sudo mount -t cifs //{storageAccountName}.file.core.windows.net/{directoryName} {local directory path} -o vers=3.0,username={storageAccountName},password={storageAccountKey},dir_mode=0777,file_mode=0777
Now, in your spark submit command, you provide the path from the command above
$ ./bin/spark-submit --class com.example.SimpleApp --master local {local directory path}/simple-project-1.0-SNAPSHOT.jar
spark-submit --master spark://kssr-virtual-machine:7077 --deploy-mode client --executor-memory 1g hdfs://localhost:9000/user/wordcount.py
For me its working I am using Hadoop 3.3.1 & Spark 3.2.1. I am able to read the file from HDFS.
Yes, it has to be a local file. I think that's simply the answer.
I am trying to execute my code on a yarn cluster
The command which I am using is
$SPARK_HOME/bin/spark-submit \
--class "MyApp" \
target/scala-2.10/my-application_2.10-1.0.jar \
--master yarn-cluster \
--num-executors 3 \
--driver-memory 6g \
--executor-memory 7g \
<outputPath>
But, I can see that this program is running only on the localhost.
Its able to read the file from hdfs.
I have tried this in standalone mode and it works fine.
Please suggest where is it going wrong.
I am using Hadoop2.4 with Spark 1.1.0 . I was able to get it running in the cluster mode.
To solve it we simply removed all the configuration files from all the slave nodes. Earlier we were running in the standalone mode and that lead to duplicating the configuration on all the slaves. Once that was done it ran as expected in cluster mode. Although performance is not up to the standalone mode.
Thanks.
I have been trying to get a Spark Streaming job, running on a EC2 instance to report to VisualVM using JMX.
As of now I have the following config file:
spark/conf/metrics.properties:
*.sink.jmx.class=org.apache.spark.metrics.sink.JmxSink
master.source.jvm.class=org.apache.spark.metrics.source.JvmSource
worker.source.jvm.class=org.apache.spark.metrics.source.JvmSource
driver.source.jvm.class=org.apache.spark.metrics.source.JvmSource
executor.source.jvm.class=org.apache.spark.metrics.source.JvmSource
And I start the spark streaming job like this:
(the -D bits I have added afterwards in the hopes of getting remote access to the ec2's jmx)
terminal:
spark/bin/spark-submit --class my.class.StarterApp --master local --deploy-mode client \
project-1.0-SNAPSHOT.jar \
-Dcom.sun.management.jmxremote \
-Dcom.sun.management.jmxremote.port=54321 \
-Dcom.sun.management.jmxremote.authenticate=false \
-Dcom.sun.management.jmxremote.ssl=false
There are two issues with the spark-submit command line:
local - you must not run Spark Standalone with local master URL because there will be no threads to run your computations (jobs) and you've got two, i.e. one for a receiver and another for the driver. You should see the following WARN in the logs:
WARN StreamingContext: spark.master should be set as local[n], n > 1
in local mode if you have receivers to get data, otherwise Spark jobs
will not get resources to process the received data.
-D options are not picked up by the JVM as they're given after the Spark Streaming application and effectively became its command-line arguments. Put them before project-1.0-SNAPSHOT.jar and start over (you have to fix the above issue first!)
spark-submit --conf "spark.driver.extraJavaOptions=-Dcom.sun.management.jmxremote -Dcom.sun.management.jmxremote.port=8090 -Dcom.sun.management.jmxremote.authenticate=false -Dcom.sun.management.jmxremote.ssl=false"/path/example/src/main/python/pi.py 10000
Notes:the configurations format : --conf "params" . tested under spark 2.+