How to `scp` directory preserving structure but only pick certain files? - bash

I need to secure copy (scp) to remotely copy a directory with its sub structure preserved from the UNIX command line. The sub directories have identically named files that I WANT and bunch of other stuff that I don't. Here is how the structure looks like.
directorytocopy
subdir1
1.wanted
2.wanted
...
1.unwanted
2.notwanted
subdir2
1.wanted
2.wanted
...
1.unwanted
2.notwanted
..
I just want the .wanted files preserving the directory structure. I realize that it is possible to write a shell (I am using bash) script to do this. Is it possible to do this in a less brute force way? I cannot copy the whole thing and delete the unwanted files because I do not have enough space.

Adrian has the best idea to use rsync. You can also use tar to bundle the wanted files:
cd directorytocopy
shopt -s nullglob globstar
tar -cf - **/*.wanted | ssh destination 'cd dirToPaste && tar -xvf -'
Here, using tar's -f option with the filename - to use stdin/stdout as the archive file.
This is untested, and may fail because the archive may not contain the actual subdirectories that hold the "wanted" files.

Assuming GNU tar on the source machine, and assuming that filenames of the wanted files won't contain newlines and they are short enough to fit the tar headers:
find /some/directory -type f -name '*.wanted' | \
tar cf - --files-from - | \
ssh user#host 'cd /some/other/dir && tar xvpf -'

rsync with and -exclude/include list follwing #Adrian Frühwirth's suggestion would be a to do this.

Related

How to exclude a list of files and folders while using tar? [duplicate]

Is there a simple shell command/script that supports excluding certain files/folders from being archived?
I have a directory that need to be archived with a sub directory that has a number of very large files I do not need to backup.
Not quite solutions:
The tar --exclude=PATTERN command matches the given pattern and excludes those files, but I need specific files & folders to be ignored (full file path), otherwise valid files might be excluded.
I could also use the find command to create a list of files and exclude the ones I don't want to archive and pass the list to tar, but that only works with for a small amount of files. I have tens of thousands.
I'm beginning to think the only solution is to create a file with a list of files/folders to be excluded, then use rsync with --exclude-from=file to copy all the files to a tmp directory, and then use tar to archive that directory.
Can anybody think of a better/more efficient solution?
EDIT: Charles Ma's solution works well. The big gotcha is that the --exclude='./folder' MUST be at the beginning of the tar command. Full command (cd first, so backup is relative to that directory):
cd /folder_to_backup
tar --exclude='./folder' --exclude='./upload/folder2' -zcvf /backup/filename.tgz .
You can have multiple exclude options for tar so
$ tar --exclude='./folder' --exclude='./upload/folder2' -zcvf /backup/filename.tgz .
etc will work. Make sure to put --exclude before the source and destination items.
You can exclude directories with --exclude for tar.
If you want to archive everything except /usr you can use:
tar -zcvf /all.tgz / --exclude=/usr
In your case perhaps something like
tar -zcvf archive.tgz arc_dir --exclude=dir/ignore_this_dir
Possible options to exclude files/directories from backup using tar:
Exclude files using multiple patterns
tar -czf backup.tar.gz --exclude=PATTERN1 --exclude=PATTERN2 ... /path/to/backup
Exclude files using an exclude file filled with a list of patterns
tar -czf backup.tar.gz -X /path/to/exclude.txt /path/to/backup
Exclude files using tags by placing a tag file in any directory that should be skipped
tar -czf backup.tar.gz --exclude-tag-all=exclude.tag /path/to/backup
old question with many answers, but I found that none were quite clear enough for me, so I would like to add my try.
if you have the following structure
/home/ftp/mysite/
with following file/folders
/home/ftp/mysite/file1
/home/ftp/mysite/file2
/home/ftp/mysite/file3
/home/ftp/mysite/folder1
/home/ftp/mysite/folder2
/home/ftp/mysite/folder3
so, you want to make a tar file that contain everyting inside /home/ftp/mysite (to move the site to a new server), but file3 is just junk, and everything in folder3 is also not needed, so we will skip those two.
we use the format
tar -czvf <name of tar file> <what to tar> <any excludes>
where the c = create, z = zip, and v = verbose (you can see the files as they are entered, usefull to make sure none of the files you exclude are being added). and f= file.
so, my command would look like this
cd /home/ftp/
tar -czvf mysite.tar.gz mysite --exclude='file3' --exclude='folder3'
note the files/folders excluded are relatively to the root of your tar (I have tried full path here relative to / but I can not make that work).
hope this will help someone (and me next time I google it)
You can use standard "ant notation" to exclude directories relative.
This works for me and excludes any .git or node_module directories:
tar -cvf myFile.tar --exclude=**/.git/* --exclude=**/node_modules/* -T /data/txt/myInputFile.txt 2> /data/txt/myTarLogFile.txt
myInputFile.txt contains:
/dev2/java
/dev2/javascript
This exclude pattern handles filename suffix like png or mp3 as well as directory names like .git and node_modules
tar --exclude={*.png,*.mp3,*.wav,.git,node_modules} -Jcf ${target_tarball} ${source_dirname}
I've experienced that, at least with the Cygwin version of tar I'm using ("CYGWIN_NT-5.1 1.7.17(0.262/5/3) 2012-10-19 14:39 i686 Cygwin" on a Windows XP Home Edition SP3 machine), the order of options is important.
While this construction worked for me:
tar cfvz target.tgz --exclude='<dir1>' --exclude='<dir2>' target_dir
that one didn't work:
tar cfvz --exclude='<dir1>' --exclude='<dir2>' target.tgz target_dir
This, while tar --help reveals the following:
tar [OPTION...] [FILE]
So, the second command should also work, but apparently it doesn't seem to be the case...
Best rgds,
I found this somewhere else so I won't take credit, but it worked better than any of the solutions above for my mac specific issues (even though this is closed):
tar zc --exclude __MACOSX --exclude .DS_Store -f <archive> <source(s)>
After reading all this good answers for different versions and having solved the problem for myself, I think there are very small details that are very important, and rare to GNU/Linux general use, that aren't stressed enough and deserves more than comments.
So I'm not going to try to answer the question for every case, but instead, try to register where to look when things doesn't work.
IT IS VERY IMPORTANT TO NOTICE:
THE ORDER OF THE OPTIONS MATTER: it is not the same put the --exclude before than after the file option and directories to backup. This is unexpected at least to me, because in my experience, in GNU/Linux commands, usually the order of the options doesn't matter.
Different tar versions expects this options in different order: for instance, #Andrew's answer indicates that in GNU tar v 1.26 and 1.28 the excludes comes last, whereas in my case, with GNU tar 1.29, it's the other way.
THE TRAILING SLASHES MATTER: at least in GNU tar 1.29, it shouldn't be any.
In my case, for GNU tar 1.29 on Debian stretch, the command that worked was
tar --exclude="/home/user/.config/chromium" --exclude="/home/user/.cache" -cf file.tar /dir1/ /home/ /dir3/
The quotes didn't matter, it worked with or without them.
I hope this will be useful to someone.
If you are trying to exclude Version Control System (VCS) files, tar already supports two interesting options about it! :)
Option : --exclude-vcs
This option excludes files and directories used by following version control systems: CVS, RCS, SCCS, SVN, Arch, Bazaar, Mercurial, and Darcs.
As of version 1.32, the following files are excluded:
CVS/, and everything under it
RCS/, and everything under it
SCCS/, and everything under it
.git/, and everything under it
.gitignore
.gitmodules
.gitattributes
.cvsignore
.svn/, and everything under it
.arch-ids/, and everything under it
{arch}/, and everything under it
=RELEASE-ID
=meta-update
=update
.bzr
.bzrignore
.bzrtags
.hg
.hgignore
.hgrags
_darcs
Option : --exclude-vcs-ignores
When archiving directories that are under some version control system (VCS), it is often convenient to read exclusion patterns from this VCS' ignore files (e.g. .cvsignore, .gitignore, etc.) This option provide such possibility.
Before archiving a directory, see if it contains any of the following files: cvsignore, .gitignore, .bzrignore, or .hgignore. If so, read ignore patterns from these files.
The patterns are treated much as the corresponding VCS would treat them, i.e.:
.cvsignore
Contains shell-style globbing patterns that apply only to the directory where this file resides. No comments are allowed in the file. Empty lines are ignored.
.gitignore
Contains shell-style globbing patterns. Applies to the directory where .gitfile is located and all its subdirectories.
Any line beginning with a # is a comment. Backslash escapes the comment character.
.bzrignore
Contains shell globbing-patterns and regular expressions (if prefixed with RE:(16). Patterns affect the directory and all its subdirectories.
Any line beginning with a # is a comment.
.hgignore
Contains posix regular expressions(17). The line syntax: glob switches to shell globbing patterns. The line syntax: regexp switches back. Comments begin with a #. Patterns affect the directory and all its subdirectories.
Example
tar -czv --exclude-vcs --exclude-vcs-ignores -f path/to/my-tar-file.tar.gz path/to/my/project/
I'd like to show another option I used to get the same result as the answers before provide, I had a similar case where I wanted to backup android studio projects all together in a tar file to upload to media fire, using the du command to find the large files, I found that I didn't need some directories like:
build, linux e .dart_tools
Using the first answer of Charles_ma I modified it a little bit to be able to run the command from the parent directory of the my Android directory.
tar --exclude='*/build' --exclude='*/linux' --exclude='*/.dart_tool' -zcvf androidProjects.tar Android/
It worked like a charm.
Ps. Sorry if this kind of answer is not allowed, if this is the case I will remove.
For Mac OSX I had to do
tar -zcv --exclude='folder' -f theOutputTarFile.tar folderToTar
Note the -f after the --exclude=
For those who have issues with it, some versions of tar would only work properly without the './' in the exclude value.
Tar --version
tar (GNU tar) 1.27.1
Command syntax that work:
tar -czvf ../allfiles-butsome.tar.gz * --exclude=acme/foo
These will not work:
$ tar -czvf ../allfiles-butsome.tar.gz * --exclude=./acme/foo
$ tar -czvf ../allfiles-butsome.tar.gz * --exclude='./acme/foo'
$ tar --exclude=./acme/foo -czvf ../allfiles-butsome.tar.gz *
$ tar --exclude='./acme/foo' -czvf ../allfiles-butsome.tar.gz *
$ tar -czvf ../allfiles-butsome.tar.gz * --exclude=/full/path/acme/foo
$ tar -czvf ../allfiles-butsome.tar.gz * --exclude='/full/path/acme/foo'
$ tar --exclude=/full/path/acme/foo -czvf ../allfiles-butsome.tar.gz *
$ tar --exclude='/full/path/acme/foo' -czvf ../allfiles-butsome.tar.gz *
I agree the --exclude flag is the right approach.
$ tar --exclude='./folder_or_file' --exclude='file_pattern' --exclude='fileA'
A word of warning for a side effect that I did not find immediately obvious:
The exclusion of 'fileA' in this example will search for 'fileA' RECURSIVELY!
Example:A directory with a single subdirectory containing a file of the same name (data.txt)
data.txt
config.txt
--+dirA
| data.txt
| config.docx
If using --exclude='data.txt' the archive will not contain EITHER data.txt file. This can cause unexpected results if archiving third party libraries, such as a node_modules directory.
To avoid this issue make sure to give the entire path, like --exclude='./dirA/data.txt'
After reading this thread, I did a little testing on RHEL 5 and here are my results for tarring up the abc directory:
This will exclude the directories error and logs and all files under the directories:
tar cvpzf abc.tgz abc/ --exclude='abc/error' --exclude='abc/logs'
Adding a wildcard after the excluded directory will exclude the files but preserve the directories:
tar cvpzf abc.tgz abc/ --exclude='abc/error/*' --exclude='abc/logs/*'
To avoid possible 'xargs: Argument list too long' errors due to the use of find ... | xargs ... when processing tens of thousands of files, you can pipe the output of find directly to tar using find ... -print0 | tar --null ....
# archive a given directory, but exclude various files & directories
# specified by their full file paths
find "$(pwd -P)" -type d \( -path '/path/to/dir1' -or -path '/path/to/dir2' \) -prune \
-or -not \( -path '/path/to/file1' -or -path '/path/to/file2' \) -print0 |
gnutar --null --no-recursion -czf archive.tar.gz --files-from -
#bsdtar --null -n -czf archive.tar.gz -T -
You can also use one of the "--exclude-tag" options depending on your needs:
--exclude-tag=FILE
--exclude-tag-all=FILE
--exclude-tag-under=FILE
The folder hosting the specified FILE will be excluded.
Use the find command in conjunction with the tar append (-r) option. This way you can add files to an existing tar in a single step, instead of a two pass solution (create list of files, create tar).
find /dir/dir -prune ... -o etc etc.... -exec tar rvf ~/tarfile.tar {} \;
You can use cpio(1) to create tar files. cpio takes the files to archive on stdin, so if you've already figured out the find command you want to use to select the files the archive, pipe it into cpio to create the tar file:
find ... | cpio -o -H ustar | gzip -c > archive.tar.gz
gnu tar v 1.26 the --exclude needs to come after archive file and backup directory arguments, should have no leading or trailing slashes, and prefers no quotes (single or double). So relative to the PARENT directory to be backed up, it's:
tar cvfz /path_to/mytar.tgz ./dir_to_backup --exclude=some_path/to_exclude
tar -cvzf destination_folder source_folder -X /home/folder/excludes.txt
-X indicates a file which contains a list of filenames which must be excluded from the backup. For Instance, you can specify *~ in this file to not include any filenames ending with ~ in the backup.
Success Case:
1) if giving full path to take backup, in exclude also should be used full path.
tar -zcvf /opt/ABC/BKP_27032020/backup_27032020.tar.gz --exclude='/opt/ABC/csv/' --exclude='/opt/ABC/log/' /opt/ABC
2) if giving current path to take backup, in exclude also should be used current path only.
tar -zcvf backup_27032020.tar.gz --exclude='ABC/csv/' --exclude='ABC/log/' ABC
Failure Case:
if giving currentpath directory to take backup and full path to ignore,then wont work
tar -zcvf /opt/ABC/BKP_27032020/backup_27032020.tar.gz --exclude='/opt/ABC/csv/' --exclude='/opt/ABC/log/' ABC
Note: mentioning exclude before/after backup directory is fine.
It seems to be impossible to exclude directories with absolute paths.
As soon as ANY of the paths are absolute (source or/and exclude) the exclude command will not work. That's my experience after trying all possible combinations.
Check it out
tar cvpzf zip_folder.tgz . --exclude=./public --exclude=./tmp --exclude=./log --exclude=fileName
I want to have fresh front-end version (angular folder) on localhost.
Also, git folder is huge in my case, and I want to exclude it.
I need to download it from server, and unpack it in order to run application.
Compress angular folder from /var/lib/tomcat7/webapps, move it to /tmp folder with name angular.23.12.19.tar.gz
Command :
tar --exclude='.git' -zcvf /tmp/angular.23.12.19.tar.gz /var/lib/tomcat7/webapps/angular/
Your best bet is to use find with tar, via xargs (to handle the large number of arguments). For example:
find / -print0 | xargs -0 tar cjf tarfile.tar.bz2
Possible redundant answer but since I found it useful, here it is:
While a FreeBSD root (i.e. using csh) I wanted to copy my whole root filesystem to /mnt but without /usr and (obviously) /mnt. This is what worked (I am at /):
tar --exclude ./usr --exclude ./mnt --create --file - . (cd /mnt && tar xvd -)
My whole point is that it was necessary (by putting the ./) to specify to tar that the excluded directories where part of the greater directory being copied.
My €0.02
I had no luck getting tar to exclude a 5 Gigabyte subdirectory a few levels deep. In the end, I just used the unix Zip command. It worked a lot easier for me.
So for this particular example from the original post
(tar --exclude='./folder' --exclude='./upload/folder2' -zcvf /backup/filename.tgz . )
The equivalent would be:
zip -r /backup/filename.zip . -x upload/folder/**\* upload/folder2/**\*
(NOTE: Here is the post I originally used that helped me https://superuser.com/questions/312301/unix-zip-directory-but-excluded-specific-subdirectories-and-everything-within-t)
The following bash script should do the trick. It uses the answer given here by Marcus Sundman.
#!/bin/bash
echo -n "Please enter the name of the tar file you wish to create with out extension "
read nam
echo -n "Please enter the path to the directories to tar "
read pathin
echo tar -czvf $nam.tar.gz
excludes=`find $pathin -iname "*.CC" -exec echo "--exclude \'{}\'" \;|xargs`
echo $pathin
echo tar -czvf $nam.tar.gz $excludes $pathin
This will print out the command you need and you can just copy and paste it back in. There is probably a more elegant way to provide it directly to the command line.
Just change *.CC for any other common extension, file name or regex you want to exclude and this should still work.
EDIT
Just to add a little explanation; find generates a list of files matching the chosen regex (in this case *.CC). This list is passed via xargs to the echo command. This prints --exclude 'one entry from the list'. The slashes () are escape characters for the ' marks.

TAR-ing on-the-fly

I'm trying to fetch all files within all directories on our SAN. I'm starting with my local to test out how I want to do it. So, at my Documents directory:
ls -sR > documents_tree.txt
With just my local, that's fine. It gives the exact output I want. But since I'm doing it on our SAN, I'm going to have to compress on-the-fly, and I'm not sure the best way of doing this. So far I have:
ls -sR > documents_tree.txt | tar -cvzf documents_tree.tgz documents_tree.txt
When I try to check the output, it is impossible for me to un-tar the file using tar -xvf documents_tree.tar after I have gunzipped it.
So, what is the correct way to compress on-the-fly? How can I accurately check my work? Will this work when performing the same process on a SAN?
You don't need to use tar to compress a single file, just use gzip:
ls -sR | gzip > documents_tree.txt.gz
You can then use gunzip documents_tree.txt to uncompress it, or tools like gzcat and zless to view it without having to uncompress it first.
Building upon your comment on the OP and using your initial command, the following works for me:
ls -sR > documents_tree.txt && tar -cvzf documents_tree.tgz documents_tree.txt

Terminal command to create a .tar.gz files from 1,000,000 .json files (without including any directory)

I have a directory with plus 1,000,000 .json files and used the following command to build a j.tar.gz only from json files (without including the /Library/WebServer/a/a/e/j/ path):
cd /Library/WebServer/a/a/e/j && tar -zcvf j.tar.gz *.json
This error happened: ...Argument list too long. Would you suggest a better command to accomplish this task? Thanks.
An initial caveat: tar is not a standards-defined tool (the POSIX archiver is pax), so its behavior can vary between platforms without any minimal guaranteed baseline. Your mileage may vary.
Since this is flagged for bash, you can use <() -- a process substitution -- to generate a filename which, when read, will emit a subprocess's output without the need for a temporary file. (This will typically be implemented as either a /dev/fd name if your operating system supports them, or a named pipe otherwise).
If you only want the cd to apply to the tar command, you can do that as follows, putting it in a subshell and using exec to have the subshell replace itself with the tar command, avoiding the fork penalty that a subshell otherwise creates:
dir=/Library/WebServer/a/a/e/j
(cd "$dir" && exec tar --null -zcvf j.tar.gz -T <(printf '%s\0' *.json) )
Alternately, if your tar supports it, you can use --include to tell tar itself to filter the names:
tar -C "$dir" --include='*.json' -cvzf "$dir/j.tar.gz" .
Points of note:
printf '%s\n' *.json is immune from this because printf is a shell builtin; thus, the glob results aren't put in an execv-family syscall's arguments, so ARG_MAX doesn't apply.
Using --null on find and '%s\0' on printf (or -print0 if you were generating your list of names with find) prevents a maliciously-generated name with a literal newline from being able to inject arbitrary names into your stream. Think about what happens if someone runs mkdir -p $'hello/\n/etc/passwd\n.json' -- you don't want /etc/passwd going into your tarball.
Try:
find . -type f -name "*.json" > ./include_file && tar -zcvf j.tar.gz --files-from ./include_file
NOTE: This was tested successfully on CentOS/RedHat 6.7.
There is a limit set by your system. You can check
$ getconf ARG_MAX
mine returns
131072
Alternatively, you can create a file list for tar and use -T, --files-from F option to get names instead of globbing which hits the max args limit.
How about something like:
> cd /Library/WebServer/a/a/e/j
> find . -name '*.json' -maxdepth 1 | xargs tar -czvf j.tar.gz --add-file
It does not require temporary file and does not need to do *.json in the shell which would fail.
Checked on Ubuntu haven't got Mac at hand.

How to untar all tar files in current directory using Putty

How can I untar all tar files in one command using Putty.
I Tried the following but its not un-tarring (all files start with alcatelS*)
tar -xfv alcatelS*.tar
It is not working i don't get no errors and it is not un-tarring.
Thank you,
-xfv is wrong since v is being referred as the file instead. Also, tar can't accept multiple files to extract at once. Perhaps -M can be used but it's a little stubborn when I tried it. Also, it would be difficult to pass multiple arguments that were extracted from pathname expansion i.e. you have to do tar -xvM -f file1.tar -f file2.tar.
Do this instead:
for F in alcatelS*.tar; do
tar -xvf "$F"
done
Or one-line: (EDIT: Sorry that -is- a "one"-liner but I find that not technically a real one-liner, just a condensed one so I should haven't referred to that as a one-liner. Avoid the wrong convention.)
for F in alcatelS*.tar; do tar -xvf "$F"; done
You can use following command for extract all tar.gz files in directory in unix
find . -name 'alcatelS*.tar.gz' -exec tar -xvf {} \;
Following is my favorite way to untar multiple tar files:
ls *tar.gz | xargs -n1 tar xvf
Can be done in one line:
cat *.tar | tar -xvf - -i

Unix tar: do not preserve full pathnames

When I try to compress files and directories with tar using absolute paths, the absolute path is preserved in the resulting compressed file. I need to use absolute paths to tell tar where the folder I wish to compress is located, but I only want it to compress that folder – not the whole path.
For example, tar -cvzf test.tar.gz /home/path/test – where I want to compress the folder test. However, what I actually end up compressing is /home/path/test. Is there anything that can be done to avoid this? I have tried playing with the -C operand to no avail.
This is ugly... but it works...
I had this same problem but with multiple folders, I just wanted to flat every files out. You can use the option "transform" to pass a sed expression and... it works as expected.
this is the expression:
's/.*\///g' (delete everything before '/')
This is the final command:
tar --transform 's/.*\///g' -zcvf tarballName.tgz */*/*.info
Use -C to specify the directory from which the files look like you want, and then specify the files as seen from that directory:
tar -cvzf test.tar.gz -C /home/path test
multi-directory example
tar cvzf my.tar.gz example.zip -C dir1 files_under_dir1 -C dir2 files_under_dir2
the files under dir 1/2 should not have path.
tar can perform transformations on the filenames on the way in and out of the archive. Consider this example that stores a bunch of files in a flat tarfile:
in the root ~/ directory
find logger -name \*.sh | tar -cvf test.tar -T - --xform='s|^.*/||' --show-transformed
The -T - option tell tar to read a list of files from stdin, the --xform='s|^.*/||' applies the sed expression to all the filenames as after they are read and before they are stored. --show-transformed is just a nicety to show you the file names after they are transformed, the default is to show the names as they are read.
There are no doubt other ways besides using find to specify files to archive. For instance, if you have dotglob set in bash, you can use ** patterns to wildcard any number of directories, shortening the previous to this:
tar -cvf test.tar --xform='s|^.*/||' --show-transformed logger/**/*.sh
You’ll have to judge what is best for your situation given the files you’re after.
find -type f | tar --transform 's/.*\///g' -zcvf comp.tar.gz -T -
Where find -type f finds all the files in the directory tree and using tar with --transform compresses them without including the folder structure. This is very useful if you want to compress only the files that are the result of a certain search or the files of a specific type like:
find -type f -name "*.txt" | tar --transform 's/.*\///g' -zcvf comp.tar.gz -T -
Unlike the other answers, you don't have to include */*/* specifying the depth of the directory. find handles that for you.

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