Am a developer i have no good knowledge on how to setup a server on AWS EC2 instance but what am trying to do is to setup thumbor server on EC2 thumbor is built with python and, am follwing this steps to get it up and running setup thumbor.
However, when i try to do install the following package using the user of the the EC2 ec2-user:
pip install numpy
i got this error:
running install_lib
creating /usr/local/lib64/python2.7/site-packages/numpy
error: could not create '/usr/local/lib64/python2.7/site-packages/numpy': Permission denied
----------------------------------------
Command "/usr/bin/python2.7 -c "import setuptools, tokenize;__file__='/tmp/pip-build-Ibmsr4/numpy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-afbRUs-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-Ibmsr4/numpy
i switched to the roor user and triedn to install the same package i got this error:
Traceback (most recent call last):
File "/usr/bin/pip", line 5, in <module>
from pkg_resources import load_entry_point
File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 3020, in <module>
working_set = WorkingSet._build_master()
File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 616, in _build_master
return cls._build_from_requirements(__requires__)
File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 629, in _build_from_requirements
dists = ws.resolve(reqs, Environment())
File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 807, in resolve
raise DistributionNotFound(req)
pkg_resources.DistributionNotFound: pip==6.1.1
My question is what cause this problem and how i could install this package so i can continue the proccess of seting up the server !
Note: am using putty on Windows also i successed to install many packages previously so i can tell my creation to the EC2 is correct.
Related
I'm trying to install psychopy within pycharm but keep getting the following error. I have a Mac and I'm using PyCharm 2022.3.2 (Professional Edition).
Defaulting to user installation because normal site-packages is not writeable
Collecting PsychoPy
Using cached PsychoPy-2022.2.5.zip (26.1 MB)
Collecting requests[security]
Using cached requests-2.28.2-py3-none-any.whl (62 kB)
Collecting cryptography
Using cached cryptography-39.0.0.tar.gz (603 kB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /Library/Developer/CommandLineTools/usr/bin/python3 /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py get_requires_for_build_wheel /var/folders/93/tfwyd2_n7lj79pnxrfkcn_gw0000gn/T/tmpnxyuxd3l
cwd: /private/var/folders/93/tfwyd2_n7lj79pnxrfkcn_gw0000gn/T/pip-install-xg71migq/cryptography
Complete output (29 lines):
=============================DEBUG ASSISTANCE==========================
If you are seeing an error here please try the following to
successfully install cryptography:
Upgrade to the latest pip and try again. This will fix errors for most
users. See: https://pip.pypa.io/en/stable/installing/#upgrading-pip
=============================DEBUG ASSISTANCE==========================
Traceback (most recent call last):
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 280, in <module>
main()
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 263, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 114, in get_requires_for_build_wheel
return hook(config_settings)
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/site-packages/setuptools/build_meta.py", line 146, in get_requires_for_build_wheel
return self._get_build_requires(
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/site-packages/setuptools/build_meta.py", line 127, in _get_build_requires
self.run_setup()
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/site-packages/setuptools/build_meta.py", line 142, in run_setup
exec(compile(code, __file__, 'exec'), locals())
File "setup.py", line 18, in <module>
from setuptools_rust import RustExtension
File "/private/var/folders/93/tfwyd2_n7lj79pnxrfkcn_gw0000gn/T/pip-build-env-g0unt5yo/overlay/lib/python3.8/site-packages/setuptools_rust/__init__.py", line 1, in <module>
from .build import build_rust
File "/private/var/folders/93/tfwyd2_n7lj79pnxrfkcn_gw0000gn/T/pip-build-env-g0unt5yo/overlay/lib/python3.8/site-packages/setuptools_rust/build.py", line 23, in <module>
from setuptools.command.build import build as CommandBuild # type: ignore[import]
ModuleNotFoundError: No module named 'setuptools.command.build'
----------------------------------------
ERROR: Command errored out with exit status 1: /Library/Developer/CommandLineTools/usr/bin/python3 /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py get_requires_for_build_wheel /var/folders/93/tfwyd2_n7lj79pnxrfkcn_gw0000gn/T/tmpnxyuxd3l Check the logs for full command output.
WARNING: You are using pip version 20.2.3; however, version 22.3.1 is available.
You should consider upgrading via the '/Library/Developer/CommandLineTools/usr/bin/python3 -m pip install --upgrade pip' command.
I would massively appreciate any help, thanks!
I'm trying to install fcntl with pip and I entered this into cmd:
pip install pycopy-fcntl
However, this error pops up and I have no idea what it is or how to fix it:
Collecting pycopy-fcntl
Using cached pycopy-fcntl-0.0.4.tar.gz (868 bytes)
ERROR: Command errored out with exit status 1:
command: 'c:\users\jackson\appdata\local\programs\python\python38\python.exe' -c 'import sys,
setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\Jackson\\AppData\\Local\\Temp\\pip-install-l2eoh603\\pycopy-fcntl\\setup.py'"'"'; __file__='"'"'C:\\Users\\Jackson\\AppData\\Local\\Temp\\pip-install-l2eoh603\\pycopy-fcntl\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base 'C:\Users\Jackson\AppData\Local\Temp\pip-pip-egg-info-j3akvbte'
cwd: C:\Users\Jackson\AppData\Local\Temp\pip-install-l2eoh603\pycopy-fcntl\
Complete output (5 lines):
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "c:\users\jackson\appdata\local\programs\python\python38\lib\tokenize.py", line 392, in open
buffer = _builtin_open(filename, 'rb')
FileNotFoundError: [Errno 2] No such file or directory:
'C:\\Users\\Jackson\\AppData\\Local\\Temp\\pip-install-l2eoh603\\pycopy-fcntl\\setup.py'
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full
command output.
Any thoughts on how I can fix this?
The home page at https://github.com/pfalcon/pycopy-lib#readme says:
pycopy-lib is a project to develop a non-monolithic standard library for the Pycopy project
It's not a pip-installable library, it's not even Python library at all. It's a library for Pycopy which is (https://github.com/pfalcon/pycopy#readme):
Pycopy aims to develop and maintain a minimalist, lightweight, and extensible implementation of Python(-compatible) language.
What are you really trying to install? Module fcntl? It's a module from stdlib since the dawn of time: https://docs.python.org/2.6/library/fcntl.html
Hello I am trying to install OSMnx and GeoPandas using pip install osmnx and pip install geopandas (according to this link: https://geoffboeing.com/2016/11/osmnx-python-street-networks/) It says that in order to use OSMnx you have to install geopandas and rtree first, rtree was installed with no issues, but this happened when trying to install osmnx (actually I tried to install osmnx before I found out that I need to install geopandas, I am giving this error here in order to give you as much information as possible)
ERROR: Command errored out with exit status 1:
command: 'c:\users\hodor\appdata\local\programs\python\python37\python.exe' -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\Hodor\\AppData\\Local\\Temp\\pip-install-m1_7rif2\\Shapely\\setup.py'"'"'; __file__='"'"'C:\\Users\\Hodor\\AppData\\Local\\Temp\\pip-install-m1_7rif2\\Shapely\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base 'C:\Users\Hodor\AppData\Local\Temp\pip-install-m1_7rif2\Shapely\pip-egg-info'
cwd: C:\Users\Hodor\AppData\Local\Temp\pip-install-m1_7rif2\Shapely\
Complete output (9 lines):
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\Hodor\AppData\Local\Temp\pip-install-m1_7rif2\Shapely\setup.py", line 80, in <module>
from shapely._buildcfg import geos_version_string, geos_version, \
File "C:\Users\Hodor\AppData\Local\Temp\pip-install-m1_7rif2\Shapely\shapely\_buildcfg.py", line 200, in <module>
lgeos = CDLL("geos_c.dll")
File "c:\users\hodor\appdata\local\programs\python\python37\lib\ctypes\__init__.py", line 356, in __init__
self._handle = _dlopen(self._name, mode)
OSError: [WinError 126] Given module was not found
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
What shall I do (I do NOT want to install anaconda, so if there is a way of avoiding anaconda I would be very happy)?
Any help appreciated, thank you very much
EDIT: OK I tried the steps explained in the question mentioned as a duplicate of my question, I was able to install fiona following these steps but when I typed pip install geopandas I got this new error:
ERROR: Command errored out with exit status 1:
command: 'c:\users\hodor\appdata\local\programs\python\python37\python.exe' -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\Hodor\\AppData\\Local\\Temp\\pip-install-5yg59bp6\\shapely\\setup.py'"'"'; __file__='"'"'C:\\Users\\Hodor\\AppData\\Local\\Temp\\pip-install-5yg59bp6\\shapely\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base 'C:\Users\Hodor\AppData\Local\Temp\pip-install-5yg59bp6\shapely\pip-egg-info'
cwd: C:\Users\Hodor\AppData\Local\Temp\pip-install-5yg59bp6\shapely\
Complete output (9 lines):
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\Hodor\AppData\Local\Temp\pip-install-5yg59bp6\shapely\setup.py", line 80, in <module>
from shapely._buildcfg import geos_version_string, geos_version, \
File "C:\Users\Hodor\AppData\Local\Temp\pip-install-5yg59bp6\shapely\shapely\_buildcfg.py", line 200, in <module>
lgeos = CDLL("geos_c.dll")
File "c:\users\hodor\appdata\local\programs\python\python37\lib\ctypes\__init__.py", line 356, in __init__
self._handle = _dlopen(self._name, mode)
OSError: [WinError 126] Uvedený modul nebyl nalezen
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
EDIT 2: Even though the cmd wrote "succesfully installed fiona" when I tried to run simple Attempt.py
import fiona
I got this message:
Traceback (most recent call last):
File "c:\Users\Hodor\.vscode\extensions\ms-python.python-2019.10.41019\pythonFiles\ptvsd_launcher.py", line 43, in <module>
main(ptvsdArgs)
File "c:\Users\Hodor\.vscode\extensions\ms-python.python-2019.10.41019\pythonFiles\lib\python\old_ptvsd\ptvsd\__main__.py", line 432, in main
run()
File "c:\Users\Hodor\.vscode\extensions\ms-python.python-2019.10.41019\pythonFiles\lib\python\old_ptvsd\ptvsd\__main__.py", line 316, in run_file
runpy.run_path(target, run_name='__main__')
File "C:\Users\Hodor\AppData\Local\Programs\Python\Python37\lib\runpy.py", line 263, in run_path
pkg_name=pkg_name, script_name=fname)
File "C:\Users\Hodor\AppData\Local\Programs\Python\Python37\lib\runpy.py", line 96, in _run_module_code
mod_name, mod_spec, pkg_name, script_name)
File "C:\Users\Hodor\AppData\Local\Programs\Python\Python37\lib\runpy.py", line 85, in _run_code
exec(code, run_globals)
File "c:\Users\Hodor\Desktop\Untitled-1.py", line 1, in <module>
import fiona
File "C:\Users\Hodor\AppData\Local\Programs\Python\Python37\lib\site-packages\fiona\__init__.py", line 87, in <module>
from fiona.collection import BytesCollection, Collection
File "C:\Users\Hodor\AppData\Local\Programs\Python\Python37\lib\site-packages\fiona\collection.py", line 9, in <module>
from fiona.ogrext import Iterator, ItemsIterator, KeysIterator
ImportError: DLL load failed: Module not found
This may also help with troubleshooting of my issue
It can be really difficult to install the geospatial dependencies with pip, primarily due to Fiona in my experience. If you can use conda, it's strongly recommended to follow the install instructions in the OSMnx documentation
If you have any trouble with the installation, try installing OSMnx in a new, clean conda environment using conda-forge and strict channel priority:
conda config --prepend channels conda-forge
conda create -n ox --strict-channel-priority python=3 osmnx
I am trying to install scispacy with pip and found that the installatio of nmslib was causing issues. There are various posts on the internet as to how to fix this, but none seem to be working for me.
I am running Python 3.7.4 on a Windows 10 laptop
Pip is version 19.2.1
Here is error part of the logs
2019-08-08T18:25:20,901 ERROR: Command errored out with exit status 1: 'c:\users\andre\appdata\local\programs\python\python37\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\andre\\AppData\\Local\\Temp\\pip-install-y6n2f026\\nmslib\\setup.py'"'"'; __file__='"'"'C:\\Users\\andre\\AppData\\Local\\Temp\\pip-install-y6n2f026\\nmslib\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record 'C:\Users\andre\AppData\Local\Temp\pip-record-90f_5c93\install-record.txt' --single-version-externally-managed --compile Check the logs for full command output.
2019-08-08T18:25:20,902 Exception information:
2019-08-08T18:25:20,902 Traceback (most recent call last):
2019-08-08T18:25:20,902 File "c:\users\andre\appdata\local\programs\python\python37\lib\site-packages\pip\_internal\cli\base_command.py", line 188, in main
2019-08-08T18:25:20,902 status = self.run(options, args)
2019-08-08T18:25:20,902 File "c:\users\andre\appdata\local\programs\python\python37\lib\site-packages\pip\_internal\commands\install.py", line 407, in run
2019-08-08T18:25:20,902 use_user_site=options.use_user_site,
2019-08-08T18:25:20,902 File "c:\users\andre\appdata\local\programs\python\python37\lib\site-packages\pip\_internal\req\__init__.py", line 58, in install_given_reqs
2019-08-08T18:25:20,902 **kwargs
2019-08-08T18:25:20,902 File "c:\users\andre\appdata\local\programs\python\python37\lib\site-packages\pip\_internal\req\req_install.py", line 959, in install
2019-08-08T18:25:20,902 spinner=spinner,
2019-08-08T18:25:20,902 File "c:\users\andre\appdata\local\programs\python\python37\lib\site-packages\pip\_internal\utils\misc.py", line 934, in call_subprocess
2019-08-08T18:25:20,902 raise InstallationError(exc_msg)
2019-08-08T18:25:20,902 pip._internal.exceptions.InstallationError: Command errored out with exit status 1: 'c:\users\andre\appdata\local\programs\python\python37\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\andre\\AppData\\Local\\Temp\\pip-install-y6n2f026\\nmslib\\setup.py'"'"'; __file__='"'"'C:\\Users\\andre\\AppData\\Local\\Temp\\pip-install-y6n2f026\\nmslib\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record 'C:\Users\andre\AppData\Local\Temp\pip-record-90f_5c93\install-record.txt' --single-version-externally-managed --compile Check the logs for full command output.
A few weeks ago I had the same issue and amongst the million things I tried I was able to get it to work, but at the time I wasn't entirely sure how I did it. I'm now on a new computer and the issue won't go away.
nmslib is a python wrapper over a c++ library. Therefore it could cause problems on few systems. I had the same issue.
Please clone the repository from here and install manually instead of the pip installation.
Try one of the following.
As per the comments from here,nmslib is optional and is only required if you use it for linker.So you may comment it from the requirements.txt and then do a manual installation via setup.py
Or
In your requirements.txt file add numpy to the top and install via setup.py file.
Though the above steps may throw a VC++ error, the scispacy module will get installed and you will be able to import it.
I tried both the solutions and they worked for me.
Note : Also, from the comments I understand that, now we may directly use spacy and load the scispacy models provided you have downloaded and installed the models.
pip install en_core_sci_sm
import spacy
nlp = spacy.load("en_core_sci_sm")
Let me know which one works for you.
Until now, I used the core module of Ansible.
Now I would play also with Extra Module. Let's say that I want to use on my playbook: bigip_partition.
I've seen that it is in https://github.com/F5Networks/f5-ansible/tree/master/library
Could someone tell me how to install them?
I'm on Ubuntu 14LTS, Ansible 2.2
At the moment:
> sudo pip install bigsuds --upgrade pip
> sudo pip install f5-sdk
> sudo pip install git+https://github.com/F5Networks/f5-ansible.git -vvv
Collecting git+https://github.com/F5Networks/f5-ansible.git
Cloning https://github.com/F5Networks/f5-ansible.git to /tmp/pip-NjrWJw-build
Running command git clone -q https://github.com/F5Networks/f5-ansible.git /tmp/pip-NjrWJw-build
Running setup.py (path:/tmp/pip-NjrWJw-build/setup.py) egg_info for package from git+https://github.com/F5Networks/f5-ansible.git
Running command python setup.py egg_info
Traceback (most recent call last):
File "<string>", line 1, in <module>
IOError: [Errno 2] No such file or directory: '/tmp/pip-NjrWJw-build/setup.py'
Cleaning up...
Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-NjrWJw-build/
Exception information:
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/usr/local/lib/python2.7/dist-packages/pip/commands/install.py", line 335, in run
wb.build(autobuilding=True)
File "/usr/local/lib/python2.7/dist-packages/pip/wheel.py", line 749, in build
self.requirement_set.prepare_files(self.finder)
File "/usr/local/lib/python2.7/dist-packages/pip/req/req_set.py", line 380, in prepare_files
ignore_dependencies=self.ignore_dependencies))
File "/usr/local/lib/python2.7/dist-packages/pip/req/req_set.py", line 634, in _prepare_file
abstract_dist.prep_for_dist()
File "/usr/local/lib/python2.7/dist-packages/pip/req/req_set.py", line 129, in prep_for_dist
self.req_to_install.run_egg_info()
File "/usr/local/lib/python2.7/dist-packages/pip/req/req_install.py", line 439, in run_egg_info
command_desc='python setup.py egg_info')
File "/usr/local/lib/python2.7/dist-packages/pip/utils/__init__.py", line 707, in call_subprocess
% (command_desc, proc.returncode, cwd))
InstallationError: Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-NjrWJw-build/
Thanks,
Riccardo
https://github.com/F5Networks/f5-ansible is not a python package, don't try to install it with pip.
To use those modules you just need to put py-files from library to your playbook-path/library.
You'll have a much better experience if you install the 'App Services 3.0' (AS3) declarative interface on you BIG-IP:
https://clouddocs.f5.com/products/extensions/f5-appsvcs-extension/3/
Then you just send 'declarations' of your desired state, instead of working with MANY imperative interfaces...
Here are some example declarations (which are easy to generate/manipulate in Ansible using Jinja2 templates):
https://clouddocs.f5.com/products/extensions/f5-appsvcs-extension/3/userguide/examples.html