LogFactory ClassNotFoundException with Google AutoValue and spring-context-support - spring-boot

A Spring boot project depends on auto-value 1.1 and spring-context-support 4.2.1. When I run it with mvn spring-boot:run, I see the following error:
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'velocityConfigurer' defined in class path resource [org/springframework/boot/autoconfigure/velocity/VelocityAutoConfiguration$VelocityWebConfiguration.class]: Invocation of init method failed; nested exception is java.lang.NoClassDefFoundError: autovalue/shaded/org/apache/commons/logging/LogFactory
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1574)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:539)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:303)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:299)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:194)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:755)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480)
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:118)
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:686)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:320)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:957)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:946)
at com.example.SampleApplication.main(SampleApplication.java:10)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at org.springframework.boot.maven.RunMojo$LaunchRunner.run(RunMojo.java:418)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.NoClassDefFoundError: autovalue/shaded/org/apache/commons/logging/LogFactory
at org.apache.velocity.runtime.log.CommonsLogLogChute.init(CommonsLogLogChute.java:75)
at org.apache.velocity.runtime.log.LogManager.createLogChute(LogManager.java:81)
at org.apache.velocity.runtime.log.LogManager.updateLog(LogManager.java:269)
at org.apache.velocity.runtime.RuntimeInstance.initializeLog(RuntimeInstance.java:871)
at org.apache.velocity.runtime.RuntimeInstance.init(RuntimeInstance.java:262)
at org.apache.velocity.app.VelocityEngine.init(VelocityEngine.java:93)
at org.springframework.ui.velocity.VelocityEngineFactory.createVelocityEngine(VelocityEngineFactory.java:249)
at org.springframework.web.servlet.view.velocity.VelocityConfigurer.afterPropertiesSet(VelocityConfigurer.java:120)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1633)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1570)
... 21 common frames omitted
Caused by: java.lang.ClassNotFoundException: autovalue.shaded.org.apache.commons.logging.LogFactory
at java.net.URLClassLoader$1.run(URLClassLoader.java:372)
at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:360)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 31 common frames omitted
Looking at AutoValue's pom.xml. It seems Apache commons has been shaded, but why aren't the shaded classes loaded?
My application's pom.xml is on Github.

The problem is the VelocityAutoConfiguration class...
For some reason, AutoValue includes Velocity in its shaded jar but does not relocate the references.
When you include spring-context-support, some Velocity-related classes are loaded, which are picked up by VelocityAutoConfiguration, which then tries to load from the AutoValue included classes, crashing spectacularly.
My solution so far has been adding
#EnableAutoConfiguration(exclude = VelocityAutoConfiguration.class)

I resolved this issue by adding exclude to SpringBootApplicationclass as follows:
#SpringBootApplication(exclude = VelocityAutoConfiguration.class)

Related

Grails ClassNotFoundException only in one subproject

I'm pulling my hair over this crazy problem that doesn't make any sense to me. I have a large Grails 4 project with multiple sub-projects. In two of these subprojects, let's call them A and B, I have a dependency to a plugin (non-public plugin): implementation group: 'dokumentlager', name: 'dokumentlager-grails4-plugin', version: "5.4.1".
This dependency has two transitive dependencies, as seen in the External Libraries list in IntelliJ:
In sub-project B a class from "dokumentlager-api" is used in a Service and imported like so:
import dokumentlager.api.Indholdstype
This gives no errors and I can start B normally.
However, in sub-project A I also import the same class and use in a Service, but there I get a ClassNotFoundException:
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'grailsApplicationPostProcessor' defined in dk.erst.plandata.integration.Application: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [grails.boot.config.GrailsApplicationPostProcessor]: Factory method 'grailsApplicationPostProcessor' threw exception; nested exception is org.grails.core.exceptions.GrailsRuntimeException: Failed to introspect class: class dk.erst.plandata.integration.faelleskomponenter.DokumentlagerPluginService
at org.springframework.beans.factory.support.ConstructorResolver.instantiate(ConstructorResolver.java:657)
at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:485)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1181)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:556)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:516)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:324)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:322)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:207)
at org.springframework.context.support.PostProcessorRegistrationDelegate.invokeBeanFactoryPostProcessors(PostProcessorRegistrationDelegate.java:119)
at org.springframework.context.support.AbstractApplicationContext.invokeBeanFactoryPostProcessors(AbstractApplicationContext.java:707)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:533)
at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.refresh(ServletWebServerApplicationContext.java:141)
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:747)
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:405)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:315)
at grails.boot.GrailsApp.run(GrailsApp.groovy:99)
at grails.boot.GrailsApp.run(GrailsApp.groovy:485)
at grails.boot.GrailsApp.run(GrailsApp.groovy:472)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:101)
at org.codehaus.groovy.runtime.callsite.StaticMetaMethodSite$StaticMetaMethodSiteNoUnwrapNoCoerce.invoke(StaticMetaMethodSite.java:149)
at org.codehaus.groovy.runtime.callsite.StaticMetaMethodSite.call(StaticMetaMethodSite.java:89)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:115)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:135)
at dk.erst.plandata.integration.Application.main(Application.groovy:11)
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [grails.boot.config.GrailsApplicationPostProcessor]: Factory method 'grailsApplicationPostProcessor' threw exception; nested exception is org.grails.core.exceptions.GrailsRuntimeException: Failed to introspect class: class dk.erst.plandata.integration.faelleskomponenter.DokumentlagerPluginService
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:185)
at org.springframework.beans.factory.support.ConstructorResolver.instantiate(ConstructorResolver.java:652)
... 30 common frames omitted
Caused by: org.grails.core.exceptions.GrailsRuntimeException: Failed to introspect class: class dk.erst.plandata.integration.faelleskomponenter.DokumentlagerPluginService
at grails.core.ArtefactHandlerAdapter.isArtefact(ArtefactHandlerAdapter.java:129)
at grails.core.DefaultGrailsApplication.addArtefact(DefaultGrailsApplication.java:774)
at grails.boot.config.GrailsApplicationPostProcessor.performGrailsInitializationSequence(GrailsApplicationPostProcessor.groovy:112)
at grails.boot.config.GrailsApplicationPostProcessor.initializeGrailsApplication(GrailsApplicationPostProcessor.groovy:94)
at grails.boot.config.GrailsApplicationPostProcessor.setApplicationContext(GrailsApplicationPostProcessor.groovy:231)
at grails.boot.config.GrailsApplicationPostProcessor.<init>(GrailsApplicationPostProcessor.groovy:78)
at grails.boot.config.GrailsAutoConfiguration.grailsApplicationPostProcessor(GrailsAutoConfiguration.groovy:70)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:154)
... 31 common frames omitted
Caused by: java.lang.NoClassDefFoundError: dokumentlager/api/Indholdstype
at dk.erst.plandata.integration.faelleskomponenter.DokumentlagerPluginService.<clinit>(DokumentlagerPluginService.groovy:23)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at org.codehaus.groovy.runtime.callsite.CallSiteArray$1.run(CallSiteArray.java:67)
at org.codehaus.groovy.runtime.callsite.CallSiteArray$1.run(CallSiteArray.java:64)
at java.security.AccessController.doPrivileged(Native Method)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.createCallStaticSite(CallSiteArray.java:64)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.createCallSite(CallSiteArray.java:161)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
at org.codehaus.groovy.runtime.callsite.StaticMetaMethodSite.call(StaticMetaMethodSite.java:94)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:119)
at grails.plugins.quartz.JobArtefactHandler.isArtefactClass(JobArtefactHandler.groovy:62)
at grails.core.ArtefactHandlerAdapter.isArtefact(ArtefactHandlerAdapter.java:125)
... 42 common frames omitted
Caused by: java.lang.ClassNotFoundException: dokumentlager.api.Indholdstype
at java.net.URLClassLoader.findClass(URLClassLoader.java:387)
at java.lang.ClassLoader.loadClass(ClassLoader.java:418)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:355)
at java.lang.ClassLoader.loadClass(ClassLoader.java:351)
... 55 common frames omitted
So far, I've tried:
Adding "dokumentlager-api" as an explicit dependency
Invalidated caches in IntelliJ
Manually deleted all caches in .gradle/
Re-cloned my repository
Reinstalled IntelliJ
How is it possible that with the same setup this gives me an error in project A but not in project B?! I should add that we have another developer that CAN start A locally... so it seems to be a very local issue...
PS: I'm using gradle 5.2
EDIT
I ran a build scan for my two sub-projects and they have the exact same dependencies in borth compileClasspath and runtimeClasspath:

HibernateSearch: Whenever I restart, I get this error?

I am using Hibernate search orm (5.5.4 final) and lucene (5.5.4 final) for indexing.
When I start server normally everything is works fine, but when I restart server I get this error.
2019-11-13 10:16:30|APP_COUNTRY_IS_UNDEFINED|x|2.4.0-SNAPSHOT|x-int|main|DEBUG|o.s.w.c.s.StandardServletEnvironment|Replacing [servletContextInitParams] PropertySource with [servletContextInitParams]
2019-11-13 10:16:30|APP_COUNTRY_IS_UNDEFINED|x|2.4.0-SNAPSHOT|x-int|main|INFO|c.j.c.h.b.dao.jpa.config.JpaConfig|creating entity manager factory
2019-11-13 10:16:35|APP_COUNTRY_IS_UNDEFINED|x|2.4.0-SNAPSHOT|x-int|main|ERROR|o.s.boot.SpringApplication|Application startup failed
2019-11-13 10:16:35|APP_COUNTRY_IS_UNDEFINED|x|2.4.0-SNAPSHOT|x-int|main|ERROR|o.s.boot.SpringApplication|Application startup failedxorg.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in class path resource [x/dao/jpa/config/JpaConfig.class]: Invocation of init method failed; nested exception is javax.persistence.PersistenceException: [PersistenceUnit: default] Unable to build Hibernate SessionFactory
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1628)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:555)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1081)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:856)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:542)
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:122)
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:737)
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:370)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:314)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1162)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1151)
at com.x.x.boot.Main.main(Main.java:87)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:48)
at org.springframework.boot.loader.Launcher.launch(Launcher.java:87)
at org.springframework.boot.loader.Launcher.launch(Launcher.java:50)
at org.springframework.boot.loader.PropertiesLauncher.main(PropertiesLauncher.java:587)
Caused by: javax.persistence.PersistenceException: [PersistenceUnit: default] Unable to build Hibernate SessionFactory
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.persistenceException(EntityManagerFactoryBuilderImpl.java:954)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:882)
at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:60)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:353)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:370)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:359)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1687)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1624)
... 24 common frames omitted
Caused by: org.hibernate.search.exception.SearchException: HSEARCH000103: Unable to initialize IndexManager named 'x.x..dao.domain.KafkaLog'
at org.hibernate.search.indexes.impl.IndexManagerHolder.createIndexManager(IndexManagerHolder.java:260)
at org.hibernate.search.indexes.impl.IndexManagerHolder.createIndexManager(IndexManagerHolder.java:513)
at org.hibernate.search.indexes.impl.IndexManagerHolder.createIndexManagers(IndexManagerHolder.java:482)
at org.hibernate.search.indexes.impl.IndexManagerHolder.buildEntityIndexBinding(IndexManagerHolder.java:91)
at org.hibernate.search.spi.SearchIntegratorBuilder.initDocumentBuilders(SearchIntegratorBuilder.java:358)
at org.hibernate.search.spi.SearchIntegratorBuilder.buildNewSearchFactory(SearchIntegratorBuilder.java:199)
at org.hibernate.search.spi.SearchIntegratorBuilder.buildSearchIntegrator(SearchIntegratorBuilder.java:117)
at org.hibernate.search.hcore.impl.HibernateSearchSessionFactoryObserver.sessionFactoryCreated(HibernateSearchSessionFactoryObserver.java:75)
at org.hibernate.internal.SessionFactoryObserverChain.sessionFactoryCreated(SessionFactoryObserverChain.java:35)
at org.hibernate.internal.SessionFactoryImpl.<init>(SessionFactoryImpl.java:532)
at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:444)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:879)
... 30 common frames omitted
Caused by: org.hibernate.search.exception.SearchException: HSEARCH000252: Unable to initialize directory provider org.hibernate.search.store.impl.FSDirectoryProvider for index x.x..dao.domain.KafkaLog
at org.hibernate.search.store.spi.BaseDirectoryProviderService.initialize(BaseDirectoryProviderService.java:67)
at org.hibernate.search.store.spi.BaseDirectoryProviderService.create(BaseDirectoryProviderService.java:49)
at org.hibernate.search.indexes.spi.DirectoryBasedIndexManager.createDirectoryProvider(DirectoryBasedIndexManager.java:230)
at org.hibernate.search.indexes.spi.DirectoryBasedIndexManager.initialize(DirectoryBasedIndexManager.java:90)
at org.hibernate.search.indexes.impl.IndexManagerHolder.createIndexManager(IndexManagerHolder.java:256)
... 41 common frames omitted
Caused by: org.hibernate.search.exception.SearchException: Cannot write into index directory: . for index x.x..dao.domain.KafkaLog
at org.hibernate.search.store.impl.DirectoryProviderHelper.makeSanityCheckedDirectory(DirectoryProviderHelper.java:170)
at org.hibernate.search.store.spi.DirectoryHelper.getVerifiedIndexPath(DirectoryHelper.java:88)
at org.hibernate.search.store.spi.DirectoryHelper.getVerifiedIndexDir(DirectoryHelper.java:104)
at org.hibernate.search.store.impl.FSDirectoryProvider.initialize(FSDirectoryProvider.java:49)
at org.hibernate.search.store.spi.BaseDirectoryProviderService.initialize(BaseDirectoryProviderService.java:64)
... 45 common frames omitted
I have changed the permission of my directory and have given write access for that user.
Most likely you forgot to set the root directory for indexes, and Hibernate Search defaults to storing indexes in the JVM's working directory (whatever it is).
Set the property hibernate.search.default.indexBase to a directory you know the application will have write access to, and this should go away. See https://docs.jboss.org/hibernate/search/5.11/reference/en-US/html_single/#search-configuration-directory for more information about configuring the directories.
Regarding the fact that it worked the first time... I would assume something was different the first time. Maybe Hibernate Search was disabled, or you started the application from another directory? Anyway, the real problem is most likely related to access rights.

Error creating bean with name 'entityManagerFactory' when add spring boot jpa dependency

I have problem when trying to add JPA to my Spring Boot program. Everything is working fine until I added the below to my pom.xml (I haven't added any code related to JPA Hibernate yet)
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-data-jpa</artifactId>
</dependency>
I got the below error when running the created jar file. Compiling with mvn clean package returning no error.
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in class path resource [org/springframework/boot/autoconfigure/orm/jpa/HibernateJpaAutoConfiguration.class]: Invocation of init method failed; nested exception is java.lang.NoClassDefFoundError: javax/xml/bind/JAXBException
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1628) ~[spring-beans-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:555) ~[spring-beans-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483) ~[spring-beans-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306) ~[spring-beans-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302) ~[spring-beans-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1078) ~[spring-context-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:857) ~[spring-context-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:543) ~[spring-context-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:693) [spring-boot-1.5.8.RELEASE.jar!/:1.5.8.RELEASE]
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:360) [spring-boot-1.5.8.RELEASE.jar!/:1.5.8.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:303) [spring-boot-1.5.8.RELEASE.jar!/:1.5.8.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1118) [spring-boot-1.5.8.RELEASE.jar!/:1.5.8.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1107) [spring-boot-1.5.8.RELEASE.jar!/:1.5.8.RELEASE]
at hello.App.main(App.java:19) [classes!/:0.1.0]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:na]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:na]
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:na]
at java.base/java.lang.reflect.Method.invoke(Method.java:564) ~[na:na]
at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:48) [gs-consuming-rest-0.1.0.jar:0.1.0]
at org.springframework.boot.loader.Launcher.launch(Launcher.java:87) [gs-consuming-rest-0.1.0.jar:0.1.0]
at org.springframework.boot.loader.Launcher.launch(Launcher.java:50) [gs-consuming-rest-0.1.0.jar:0.1.0]
at org.springframework.boot.loader.JarLauncher.main(JarLauncher.java:51) [gs-consuming-rest-0.1.0.jar:0.1.0]
Caused by: java.lang.NoClassDefFoundError: javax/xml/bind/JAXBException
at org.hibernate.boot.spi.XmlMappingBinderAccess.<init>(XmlMappingBinderAccess.java:43) ~[hibernate-core-5.0.12.Final.jar!/:5.0.12.Final]
at org.hibernate.boot.MetadataSources.<init>(MetadataSources.java:87) ~[hibernate-core-5.0.12.Final.jar!/:5.0.12.Final]
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.<init>(EntityManagerFactoryBuilderImpl.java:179) ~[hibernate-entitymanager-5.0.12.Final.jar!/:5.0.12.Final]
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.<init>(EntityManagerFactoryBuilderImpl.java:149) ~[hibernate-entitymanager-5.0.12.Final.jar!/:5.0.12.Final]
at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:54) ~[spring-orm-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:353) ~[spring-orm-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:370) ~[spring-orm-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:359) ~[spring-orm-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1687) ~[spring-beans-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1624) ~[spring-beans-4.3.12.RELEASE.jar!/:4.3.12.RELEASE]
... 23 common frames omitted
Caused by: java.lang.ClassNotFoundException: javax.xml.bind.JAXBException
at java.base/java.net.URLClassLoader.findClass(URLClassLoader.java:466) ~[na:na]
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:563) ~[na:na]
at org.springframework.boot.loader.LaunchedURLClassLoader.loadClass(LaunchedURLClassLoader.java:94) ~[gs-consuming-rest-0.1.0.jar:0.1.0]
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:496) ~[na:na]
... 33 common frames omitted
If I remove the spring-boot-starter-data-jpa then everything works fine.
Please help or guide me how to check.
I have looked through all the replies here Error creating bean with name 'entityManagerFactory' defined in class path resource : Invocation of init method failed but found nothing to work for my case
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
</dependency>
Add this dependency in pom.xml
The latest version could be found here : mvnrepository.com
Your dependencies is conflicted i thought. You can check it using the command in console.
mvn dependency:tree -Dverbose
Good luck.
tried this following line in VM arguments in any IDE like eclipse or STS
--add-modules java.xml.bind
Good Luck ...!!
You can Resolved this by using rt.jar file import in project lib
No 1 Right Click on Your Project go to Properties
No 2 Click on Java Build Path
Then See at right side Click On Add Variables
No 3 Open a new Window Click on Extent button
No 4 C:\Program Files\Java\jre1.8.0_111\lib\rt.jar set path and give name of variable(aaa) not issue of variable name your can your name asif

Hibernate 4.3.11 - Envers fails with ZonedDateTime field

I try use #Audited in Domain class, but Domain have a ZonedDateTime fields and receive error :
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in class path resource [org/springframework/boot/autoconfigure/orm/jpa/HibernateJpaAutoConfiguration.class]: Invocation of init method failed; nested exception is javax.persistence.PersistenceException: [PersistenceUnit: default] Unable to build Hibernate SessionFactory
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1583)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1076)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:851)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:541)
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:122)
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:761)
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:371)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:315)
at br.com.engdb.geotec.GeotecApp.main(GeotecApp.java:66)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.springframework.boot.devtools.restart.RestartLauncher.run(RestartLauncher.java:49)
Caused by: javax.persistence.PersistenceException: [PersistenceUnit: default] Unable to build Hibernate SessionFactory
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.persistenceException(EntityManagerFactoryBuilderImpl.java:1249)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.access$600(EntityManagerFactoryBuilderImpl.java:120)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl$4.perform(EntityManagerFactoryBuilderImpl.java:860)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl$4.perform(EntityManagerFactoryBuilderImpl.java:850)
at org.hibernate.boot.registry.classloading.internal.ClassLoaderServiceImpl.withTccl(ClassLoaderServiceImpl.java:425)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:849)
at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:60)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:353)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:373)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:362)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1642)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1579)
... 19 common frames omitted
Caused by: org.hibernate.MappingException: Could not determine type for: BasicType adapter for AttributeConverter<ZonedDateTime,Date>, at table: plan_aud, for columns: [org.hibernate.mapping.Column(date_limit)]
at org.hibernate.mapping.SimpleValue.getType(SimpleValue.java:349)
at org.hibernate.tuple.PropertyFactory.buildEntityBasedAttribute(PropertyFactory.java:246)
at org.hibernate.tuple.entity.EntityMetamodel.<init>(EntityMetamodel.java:227)
at org.hibernate.persister.entity.AbstractEntityPersister.<init>(AbstractEntityPersister.java:520)
at org.hibernate.persister.entity.SingleTableEntityPersister.<init>(SingleTableEntityPersister.java:148)
at sun.reflect.GeneratedConstructorAccessor106.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at org.hibernate.persister.internal.PersisterFactoryImpl.create(PersisterFactoryImpl.java:163)
at org.hibernate.persister.internal.PersisterFactoryImpl.createEntityPersister(PersisterFactoryImpl.java:135)
at org.hibernate.internal.SessionFactoryImpl.<init>(SessionFactoryImpl.java:401)
at org.hibernate.cfg.Configuration.buildSessionFactory(Configuration.java:1859)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl$4.perform(EntityManagerFactoryBuilderImpl.java:857)
... 28 common frames omitted
I try use #Converter for ZonedDateTime field to DateTime, but doesn´t works.
Somebody help me ?
Same question
The problem is that ZoneDateTime is a Java 8 type and therefore requires the inclusion of a special artifact called hibernate-java8 in order to gain access to that type. This artifact was not published until Hibernate 5.0, so using Hibernate 4.3 isn't compliant if you want to use java 8 types without writing the type implementation yourself.
From Hibernate 5.2 onward, Java 8 is the baseline; ergo, the types in hibernate-java8 were merged into hibernate-core and the hibernate-java8 artifact made obsolete.
The problem is resolved by updating the version of hibernate and jackson to a newer one.
I use SqlServer in this case, so I needed to change the dialect.

Spring Boot 1.4.1 runnable jar javax.persistence.PersistenceException: Unable to resolve persistence unit root URL

We have a Spring Boot 1.4.1 application and when we create runnable jar and try to run it, we get following stack trace:
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'xxxEntityManager' defined in class path resource [xxx/web/config/XxxConfig.class]: Invocation of init method failed; nested exception is javax.persistence.Persistenc
eException: Unable to resolve persistence unit root URL
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1583) ~[spring-beans-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545) ~[spring-beans-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482) ~[spring-beans-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306) ~[spring-beans-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302) ~[spring-beans-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1076) ~[spring-context-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:851) ~[spring-context-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:541) ~[spring-context-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:122) ~[spring-boot-1.4.1.RELEASE.jar!/:1.4.1.RELEASE]
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:761) [spring-boot-1.4.1.RELEASE.jar!/:1.4.1.RELEASE]
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:371) [spring-boot-1.4.1.RELEASE.jar!/:1.4.1.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:315) [spring-boot-1.4.1.RELEASE.jar!/:1.4.1.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1186) [spring-boot-1.4.1.RELEASE.jar!/:1.4.1.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1175) [spring-boot-1.4.1.RELEASE.jar!/:1.4.1.RELEASE]
at xxx.App.main(App.java:48) [classes!/:0.0.1-SNAPSHOT]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_05]
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[na:1.8.0_05]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[na:1.8.0_05]
at java.lang.reflect.Method.invoke(Unknown Source) ~[na:1.8.0_05]
at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:48) [NES-Web-0.0.1-SNAPSHOT-exec.jar:0.0.1-SNAPSHOT]
at org.springframework.boot.loader.Launcher.launch(Launcher.java:87) [NES-Web-0.0.1-SNAPSHOT-exec.jar:0.0.1-SNAPSHOT]
at org.springframework.boot.loader.Launcher.launch(Launcher.java:50) [NES-Web-0.0.1-SNAPSHOT-exec.jar:0.0.1-SNAPSHOT]
at org.springframework.boot.loader.JarLauncher.main(JarLauncher.java:58) [NES-Web-0.0.1-SNAPSHOT-exec.jar:0.0.1-SNAPSHOT]
Caused by: javax.persistence.PersistenceException: Unable to resolve persistence unit root URL
at org.springframework.orm.jpa.persistenceunit.DefaultPersistenceUnitManager.determineDefaultPersistenceUnitRootUrl(DefaultPersistenceUnitManager.java:605) ~[spring-orm-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.orm.jpa.persistenceunit.DefaultPersistenceUnitManager.preparePersistenceUnitInfos(DefaultPersistenceUnitManager.java:445) ~[spring-orm-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.orm.jpa.persistenceunit.DefaultPersistenceUnitManager.afterPropertiesSet(DefaultPersistenceUnitManager.java:426) ~[spring-orm-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:325) ~[spring-orm-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:373) ~[spring-orm-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:362) ~[spring-orm-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1642) ~[spring-beans-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1579) ~[spring-beans-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
... 24 common frames omitted
Caused by: java.io.FileNotFoundException: class path resource [] cannot be resolved to URL because it does not exist
at org.springframework.core.io.ClassPathResource.getURL(ClassPathResource.java:187) ~[spring-core-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
at org.springframework.orm.jpa.persistenceunit.DefaultPersistenceUnitManager.determineDefaultPersistenceUnitRootUrl(DefaultPersistenceUnitManager.java:602) ~[spring-orm-4.3.3.RELEASE.jar!/:4.3.3.RELEASE]
... 31 common frames omitted
We also found this issue https://github.com/spring-projects/spring-boot/issues/6635, but according to it, this should be fixed in Spring Boot 1.4.1
NOTE: we don't have annotations in our model classes, we use hbm.xml files for mapping. But, we use Spring Data JPA repositories.
Based on directions I read here (https://github.com/spring-projects/spring-boot/issues/6983#issuecomment-249981782) I managed to create workaround this problem by doing following:
I created META-INF/orm.xml file and put it in src/main/resources folder. File's contents can be found at this link https://github.com/spring-projects/spring-data-jpa/blob/master/src/test/resources/META-INF/orm.xml (you don't actually need persistence-unit-metadata, named-query and entity tags, just an empty XML with root entity-mappings tag is enough).
When configuring LocalContainerEntityManagerFactoryBean bean, I need to call setPersistenceUnitRootLocation method and set location to classpath:META-INF/orm.xml
This workaround solves mine problem when running fat jar. However, by implementing this workaround I created another problem - I was unable to run an app from IDE, so I had to implement some sort of conditional setting of persistence unit's root location, based on some indicator whether I'm running a jar or from IDE.
You're probably affected by this regression. There's a workaround provided in the issue. Please give that a try and wait for 1.4.2.RELEASE. Sorry :(
I got the same error building the jar with maven-jar-plugin but building the jar like following works properly:
<build>
<plugins>
<plugin>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-maven-plugin</artifactId>
</plugin>
</plugins>
</build>

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