What is the base of a refined element? - hl7-fhir

Consider the logical fragment:
Patient (Profile A)
identifier (sliced on system) 0..*
myclinicnbr (slice 1) 0..1
yourclinicnbr (slice 2) 0..*
And then:
Patient (Profile B, base is A)
identifier (sliced on system) 0..2
myclinicnbr (slice 1) (no diff)
yourclinicnbr (slice 2) 0..*
In B, the effective cardinalities are:
identifier 0..2 (explicit)
myclinicnbr 0..1 (constrained by A::myclinicnbr)
yourclinicnbr 0..2 (constrained by B::identifier)
Questions are:
Should B validate with B::yourclinicnbr having a cardinality incompatible with B::identifier?
Must B::yourclinicnbr override A::yourclinicnbr to bring it into compliance with B::identifier, or could it make no statement?
For each part in B, what is the correct snapshot cardinality?

I don't think we've said that cardinalities for slices must be proper subsets of the parent. Doing that would require a lot of awkward math each time a new slice got introduced - adding a minOccurs = 1 slice could easily force decreasing the maximum of a bunch of other 0..n slices. The expectation is that the instance must meet the constraints of both the base element and the slices, so if you have a 0..3 element with a bunch of 0..* slices, you can't have an instance that contains more than 3 repetitions, regardless of the fact that the slices might indicate 0..*. So the implementation behavior isn't confusing. It could however be confusing from a documentation perspective, and might in some cases cause confusion for software.
My leaning is to leave it up to the profile designer as to whether the slice cardinalities are struct mathematical subsets of the element cardinality. In some cases it'll be easy and worth it. In other cases, it might be more pain than the effort justifies. If you think we need to be tighter on this, a change proposal with rationale would be welcome.

Related

How to use member predicate to specify constraints in prolog

I'm trying to write a Prolog program which does the following:
I have some relations defined in the Relations list. (For example: [f1,s1] means f1 needs s1) Depending on what features(f1,f2,f3) are selected in the TargetFeat list, I would like to create Result list using constraint programming.
Here is a sample code:
Relations =[[f1, s1], [f2, s2], [f3, s3], [f3, s4]],
TargetFeat = [f3, f1],
Result = [],
member(f3,TargetFeat) #= member(s3,Result), %One of the constraints
labeling(Result).
This doesn't work because #= works only with arithmetic expressions as operands. What are the alternatives to achieve something like this ?
There are many possible ways to model such dependencies with constraints. I consider in this post CLP(FD) and CLP(B) constraints, because they are most commonly used for solving combinatorial tasks.
Consider first CLP(FD), which is more frequently used and more convenient in many ways. When using CLP(FD) constraints, you again have several options to represent your task. However, no matter which model you eventually choose, you must first switch all items in your representation to suitable entitites that the constraint solver can actually reason about. In the case of CLP(FD), this means switching your entities to integers.
Translating your entities to corresponding integers is very straight-forward, and it is one of the reasons why CLP(FD) constraints also suffice to model tasks over domains that actually do not contain integers, but can be mapped to integers. So, let us suppose you are not reasoning about features f1, f2 and f3, but about integers 0, 1, and 2, or any other set of integers that suits you.
You can directly translate your requirements to this new domain. For example, instead of:
[f1,s1] means: f1 needs s1
we can say for example:
0 -> 3 means: 0 needs 3
And this brings us already very close to CLP(FD) constraints that let us model the whole problem. We only need to make one more mental leap to obtain a representation that lets us model all requirements. Instead of concrete integers, we now use CLP(FD) variables to indicate whether or not a specific requirement must be met to obtain the desired features. We shall use the variables R1, R2, R3, ... to denote which requirements are needed, by using either 0 (not needed) or 1 (needed) for each of the possible requirements.
At this point, you must develop a clear mental model of what you actually want to describe. I explain what I have in mind: I want to describe a relation between three things:
a list Fs of features
a list Ds of dependencies between features and requirements
a list Rs of requirements
We have already considered how to represent all these entitites: (1) is a list of integers that represent the features we want to obtain. (2) is a list of F -> R pairs that mean "feature F needs requirement R", and (3) is a list of Boolean variables that indicate whether or not each requirement is eventually needed.
Now let us try to relate all these entitites to one another.
First things first: If no features are desired, it all is trivial:
features_dependencies_requirements([], _, _).
But what if a feature is actually desired? Well, it's simple: We only need to take into account the dependencies of that feature:
features_dependencies_requirements([F|Fs], Ds, Rs) :-
member(F->R, Ds),
so we have in R the requirement of feature F. Now we only need to find the suitable variable in Rs that denotes requirement R. But how do we find the right variable? After all, a Prolog variable "does not have a bow tie", or—to foreigners—lacks a mark by which we could distinguish it from others. So, at this point, we would actually find it convenient to be able to nicely pick a variable out of Rs given the name of its requirement. Let us hence suppose that we represent Rs as a list of pairs of the form I=R, where I is the integer that defines the requirement, and R is the Boolean indicator that denotes whether that requirement is needed. Given this representation, we can define the clause above in its entirety as follows:
features_dependencies_requirements([F|Fs], Ds, Rs) :-
member(F->I, Ds),
member(I=1, Rs),
features_dependencies_requirements(Fs, Ds, Rs).
That's it. This fully relates a list of features, dependencies and requirements in such a way that the third argument indicates which requirements are necessary to obtain the features.
At this point, the attentive reader will see that no CLP(FD) constraints whatsoever were actually used in the code above, and in fact the translation of features to integers was completely unnecessary. We can as well use atoms to denote features and requirements, using the exact same code shown above.
Sample query and answers:
?- features_dependencies_requirements([f3,f1],
[f1->s1,f2->s2,f3->s3,f3->s4],
[s1=S1,s2=S2,s3=S3,s4=S4]).
S1 = S3, S3 = 1 ;
S1 = S4, S4 = 1 ;
false.
Obviously, I have made the following assumption: The dependencies are disjunctive, which means that the feature can be implemented if at least one of the requirements is satisifed. If you want to turn this into a conjunction, you will obviously have to change this. You can start by representing dependencies as F -> [R1,R2,...R_n].
Other than that, can it still be useful to translate your entitites do integers? Yes, because many of your constraints can likely be formulated also with CLP(FD) constraints, and you need integers for this to work.
To get you started, here are two ways that may be usable in your case:
use constraint reification to express what implies what. For example: F #==> R.
use global constraints like table/2 that express relations.
Particularly in the first case, CLP(B) constraints may also be useful. You can always use Boolean variables to express whether a requirement must be met.
Not a solution but some observations that would not fit a comment.
Don't use lists to represent relations. For example, instead of [f1, s1], write requires(f1, s1). If these requirement are fixed, then define requires/2 as a predicate. If you need to identify or enumerate features, consider a feature/1 predicate. For example:
feature(f1).
feature(f2).
...
Same for s1, s2, ... E.g.
support(s1).
support(s2).
...

most readable way in XPath to write "is value X a member of sequence S"?

XPath 2.0 has some new functions and syntax, relative to 1.0, that work with sequences. Some of theset don't really add to what the language could already do in 1.0 (with node sets), but they make it easier to express the desired logic in ways that are more readable. This increases the chances of the programmer getting the code correct -- and keeping it that way. For example,
empty(s) is equivalent to not(s), but its intent is much clearer when you want to test whether a sequence is empty.
Correction: the effective boolean value of a sequence is in general more complicated than that. E.g. empty((0)) != not((0)). This applies to exists(s) vs. s in a boolean context as well. However, there are domains of s where empty(s) is equivalent to not(s), so the two could be used interchangeably within those domains. But this goes to show that the use of empty() can make a non-trivial difference in making code easier to understand.
Similarly, exists(s) is equivalent to boolean(s) that already existed in XPath 1.0 (or just s in a boolean context), but again is much clearer about the intent.
Quantified expressions; e.g. "some $x in expression satisfies test($x)" would be equivalent to boolean(expression[test(.)]) (although the new syntax is more flexible, in that you don't need to worry about losing the context item because you have the variable to refer to it by).
Similarly, "every $x in expression satisfies test($x)" would be equivalent to not(expression[not(test(.))]) but is more readable.
These functions and syntax were evidently added at no small cost, solely to serve the goal of writing XPath that is easier to map to how humans think. This implies, as experienced developers know, that understandable code is significantly superior to code that is difficult to understand.
Given all that ... what would be a clear and readable way to write an XPath test expression that asks
Does value X occur in sequence S?
Some ways to do it: (Note: I used X and S notation here to indicate the value and the sequence, but I don't mean to imply that these subexpressions are element name tests, nor that they are simple expressions. They could be complicated.)
X = S: This would be one of the most unreadable, since it requires the reader to
think about which of X and S are sequences vs. single values
understand general comparisons, which are not obvious from the syntax
However, one advantage of this form is that it allows us to put the topic (X) before the comment ("is a member of S"), which, I think, helps in readability.
See also CMS's good point about readability, when the syntax or names make the "cardinality" of X and S obvious.
index-of(S, X): This one is clear about what's intended as a value and what as a sequence (if you remember the order of arguments to index-of()). But it expresses more than we need to: it asks for the index, when all we really want to know is whether X occurs in S. This is somewhat misleading to the reader. An experienced developer will figure out what's intended, with some effort and with understanding of the context. But the more we rely on context to understand the intent of each line, the more understanding the code becomes a circular (spiral) and potentially Sisyphean task! Also, since index-of() is designed to return a list of all the indexes of occurrences of X, it could be more expensive than necessary: a smart processor, in order to evaluate X = S, wouldn't necessarily have to find all the contents of S, nor enumerate them in order; but for index-of(S, X), correct order would have to be determined, and all contents of S must be compared to X. One other drawback of using index-of() is that it's limited to using eq for comparison; you can't, for example, use it to ask whether a node is identical to any node in a given sequence.
Correction: This form, used as a conditional test, can result in a runtime error: Effective boolean value is not defined for a sequence of two or more items starting with a numeric value. (But at least we won't get wrong boolean values, since index-of() can't return a zero.) If S can have multiple instances of X, this is another good reason to prefer form 3 or 6.
exists(index-of(X, S)): makes the intent clearer, and would help the processor eliminate the performance penalty if the processor is smart enough.
some $m in S satisfies $m eq X: This one is very clear, and matches our intent exactly. It seems long-winded compared to 1, and that in itself can reduce readability. But maybe that's an acceptable price for clarity. Keep in mind that X and S could potentially be complex expressions themselves -- they're not necessarily just variable references. An advantage is that since the eq operator is explicit, you can replace it with is or any other comparison operator.
S[. eq X]: clearer than 1, but shares the semantic drawbacks of 2: it computes all members of S that are equal to X. Actually, this could return a false negative (incorrect effective boolean value), if X is falsy. E.g. (0, 1)[. eq 0] returns 0 which is falsy, even though 0 occurs in (0, 1).
exists(S[. eq X]): Clearer than 1, 2, 3, and 5. Not as clear as 4, but shorter. Avoids the drawbacks of 5 (or at least most of them, depending on the processor smarts).
I'm kind of leaning toward the last one, at this point: exists(S[. eq X])
What about you... As a developer coming to a complex, unfamiliar XSLT or XQuery or other program that uses XPath 2.0, and wanting to figure out what that program is doing, which would you find easiest to read?
Apologies for the long question. Thanks for reading this far.
Edit: I changed = to eq wherever possible in the above discussion, to make it easier to see where a "value comparison" (as opposed to a general comparison) was intended.
For what it's worth, if names or context make clear that X is a singleton, I'm happy to use your first form, X = S -- for example when I want to check an attribute value against a set of possible values:
<xsl:when test="#type = ('A', 'A+', 'A-', 'B+')" />
or
<xsl:when test="#type = $magic-types"/>
If I think there is a risk of confusion, then I like your sixth formulation. The less frequently I have to remember the rules for calculating an effective boolean value, the less frequently I make a mistake with them.
I prefer this one:
count(distinct-values($seq)) eq count(distinct-values(($x, $seq)))
When $x is itself a sequence, this expression implements the (value-based) subset of relation between two sets of values, that are represented as sequences. This implementation of subset of has just linear time complexity -- vs many other ways of expressing this, that have O(N^2)) time complexity.
To summarize, the question whether a single value belongs to a set of values is a special case of the question whether one set of values is a subset of another. If we have a good implementation of the latter, we can simply use it for answering the former.
The functx library has a nice implementation of this function, so you can use
functx:is-node-in-sequence($X, $Y)
(this particular function can be found at http://www.xqueryfunctions.com/xq/functx_is-node-in-sequence.html)
The whole functx library is available for both XQuery (http://www.xqueryfunctions.com/) and XSLT (http://www.xsltfunctions.com/)
Marklogic ships the functx library with their core product; other vendors may also.
Another possibility, when you want to know whether node X occurs in sequence S, is
exists((X) intersect S)
I think that's pretty readable, and concise. But it only works when X and the values in S are nodes; if you try to ask
exists(('bob') intersect ('alice', 'bob'))
you'll get a runtime error.
In the program I'm working on now, I need to compare strings, so this isn't an option.
As Dimitri notes, the occurrence of a node in a sequence is a question of identity, not of value comparison.

Maximum difference between columns using relational algebra

Is it possible to obtain the maximum difference between two columns (for example starting and ending weights)?
Right now I'm leaning towards no as this would require a new column with the difference between the two columns for each row, then taking the max of that. Doing it the way I orginally intended doesn't work either since arithmetic operations are not allowed in the conditions of select operations (e.g. SIGMA (c1 - c2 < c3 - c4)(Table) is not allowed).
Disclosure: this is part of a homework question.
It can be done, exactly in the way you planned, but you need generalized projection for that. The generalized projection is the operator
Π(E1, E2,..., En)R
where R is a relation, and E1...En are expressions in the form a⊕b, where a and b are attributes of R or constants, and ⊕ is an arbitrary binary operator between them. The result is a relation with attributes E1...En.
This would allow you to project the differences into a new relation (R' := Π(x-y)R), then find the maximum on that, just as you planned.
If we're not allowed to use generalized projection, then I think we have no means to actually subtract an attribute from another, or to actually calculate anything from them, as the definition of projection allow only attribute names, and the definition of selection allow only expressions of the form aθb where a and b are attributes or constants and θ is a binary relational operator (this is logical, in its way, because if we have a relation R(X,Y), then we have no idea about the type of X or Y, making operations on them quite meaningless).
I think generalized projection is a great extension to relational algebra. It's obviously immensely useful in real life, and it can be defended even from a more scientific point of view: if we allow binary conditional operators on the values like "X > 50", then we made assumptions on the type already, rendering that point kind of moot. Your instructor may disagree, though.
If you're looking to do this in the real world, you should be able to do this with a subquery (or a view, which amounts to much the same thing), something like:
select max (diff) from (
select high - low as diff from blah blah blah
)
Whether this applies to the abstract world of relational algebra, I couldn't say. I'm too busy fixing those damn real-world problems :-)

Reusing memory of immutable state in eager evaluation?

I'm studying purely functional language and currently thinking about some immutable data implementation.
Here is a pseudo code.
List a = [1 .. 10000]
List b = NewListWithoutLastElement a
b
When evaluating b, b must be copied in eager/strict implementation of immutable data.
But in this case, a is not used anymore in any place, so memory of 'a' can be re-used safely to avoid copying cost.
Furthermore, programmer can force compiler always do this by marking the type List with some keyword meaning must-be-disposed-after-using. Which makes compile time error on logic cannot avoid copying cost.
This can gain huge performance. Because it can be applied to huge object graph too.
How do you think? Any implementations?
This would be possible, but severely limited in scope. Keep in mind that the vast majority of complex values in a functional program will be passed to many functions to extract various properties from them - and, most of the time, those functions are themselves arguments to other functions, which means you cannot make any assumptions about them.
For example:
let map2 f g x = f x, g x
let apply f =
let a = [1 .. 10000]
f a
// in another file :
apply (map2 NewListWithoutLastElement NewListWithoutFirstElement)
This is fairly standard in functional code, and there is no way to place a must-be-disposed-after-using attribute on a because no specific location has enough knowledge about the rest of the program. Of course, you could try adding that information to the type system, but type inference on this is decidedly non-trivial (not to mention that types would grow quite large).
Things get even worse when you have compound objects, such as trees, that might share sub-elements between values. Consider this:
let a = binary_tree [ 1; 2; 5; 7; 9 ]
let result_1 = complex_computation_1 (insert a 6)
let result_2 = complex_computation_2 (remove a 5)
In order to allow memory reuse within complex_computation_2, you would need to prove that complex_computation_1 does not alter a, does not store any part of a within result_1 and is done using a by the time complex_computation_2 starts working. While the two first requirements might seem the hardest, keep in mind that this is a pure functional language: the third requirement actually causes a massive performance drop because complex_computation_1 and complex_computation_2 cannot be run on different threads anymore!
In practice, this is not an issue in the vast majority of functional languages, for three reasons:
They have a garbage collector built specifically for this. It is faster for them to just allocate new memory and reclaim the abandoned one, rather than try to reuse existing memory. In the vast majority of cases, this will be fast enough.
They have data structures that already implement data sharing. For instance, NewListWithoutFirstElement already provides full reuse of the memory of the transformed list without any effort. It's fairly common for functional programmers (and any kind of programmers, really) to determine their use of data structures based on performance considerations, and rewriting a "remove last" algorithm as a "remove first" algorithm is kind of easy.
Lazy evaluation already does something equivalent: a lazy list's tail is initially just a closure that can evaluate the tail if you need to—so there's no memory to be reused. On the other hand, this means that reading an element from b in your example would read one element from a, determine if it's the last, and return it without really requiring storage (a cons cell would probably be allocated somewhere in there, but this happens all the time in functional programming languages and short-lived small objects are perfectly fine with the GC).

Why is the new Tuple type in .Net 4.0 a reference type (class) and not a value type (struct)

Does anyone know the answer and/or have an opinion about this?
Since tuples would normally not be very large, I would assume it would make more sense to use structs than classes for these. What say you?
Microsoft made all tuple types reference types in the interests of simplicity.
I personally think this was a mistake. Tuples with more than 4 fields are very unusual and should be replaced with a more typeful alternative anyway (such as a record type in F#) so only small tuples are of practical interest. My own benchmarks showed that unboxed tuples up to 512 bytes could still be faster than boxed tuples.
Although memory efficiency is one concern, I believe the dominant issue is the overhead of the .NET garbage collector. Allocation and collection are very expensive on .NET because its garbage collector has not been very heavily optimized (e.g. compared to the JVM). Moreover, the default .NET GC (workstation) has not yet been parallelized. Consequently, parallel programs that use tuples grind to a halt as all cores contend for the shared garbage collector, destroying scalability. This is not only the dominant concern but, AFAIK, was completely neglected by Microsoft when they examined this problem.
Another concern is virtual dispatch. Reference types support subtypes and, therefore, their members are typically invoked via virtual dispatch. In contrast, value types cannot support subtypes so member invocation is entirely unambiguous and can always be performed as a direct function call. Virtual dispatch is hugely expensive on modern hardware because the CPU cannot predict where the program counter will end up. The JVM goes to great lengths to optimize virtual dispatch but .NET does not. However, .NET does provide an escape from virtual dispatch in the form of value types. So representing tuples as value types could, again, have dramatically improved performance here. For example, calling GetHashCode on a 2-tuple a million times takes 0.17s but calling it on an equivalent struct takes only 0.008s, i.e. the value type is 20× faster than the reference type.
A real situation where these performance problems with tuples commonly arises is in the use of tuples as keys in dictionaries. I actually stumbled upon this thread by following a link from the Stack Overflow question F# runs my algorithm slower than Python! where the author's F# program turned out to be slower than his Python precisely because he was using boxed tuples. Manually unboxing using a hand-written struct type makes his F# program several times faster, and faster than Python. These issues would never had arisen if tuples were represented by value types and not reference types to begin with...
The reason is most likely because only the smaller tuples would make sense as value types since they would have a small memory footprint. The larger tuples (i.e. the ones with more properties) would actually suffer in performance since they would be larger than 16 bytes.
Rather than have some tuples be value types and others be reference types and force developers to know which are which I would imagine the folks at Microsoft thought making them all reference types was simpler.
Ah, suspicions confirmed! Please see Building Tuple:
The first major decision was whether
to treat tuples either as a reference
or value type. Since they are
immutable any time you want to change
the values of a tuple, you have to
create a new one. If they are
reference types, this means there can
be lots of garbage generated if you
are changing elements in a tuple in a
tight loop. F# tuples were reference
types, but there was a feeling from
the team that they could realize a
performance improvement if two, and
perhaps three, element tuples were
value types instead. Some teams that
had created internal tuples had used
value instead of reference types,
because their scenarios were very
sensitive to creating lots of managed
objects. They found that using a value
type gave them better performance. In
our first draft of the tuple
specification, we kept the two-,
three-, and four-element tuples as
value types, with the rest being
reference types. However, during a
design meeting that included
representatives from other languages
it was decided that this "split"
design would be confusing, due to the
slightly different semantics between
the two types. Consistency in behavior
and design was determined to be of
higher priority than potential
performance increases. Based on this
input, we changed the design so that
all tuples are reference types,
although we asked the F# team to do
some performance investigation to see
if it experienced a speedup when using
a value type for some sizes of tuples.
It had a good way to test this, since
its compiler, written in F#, was a
good example of a large program that
used tuples in a variety of scenarios.
In the end, the F# team found that it
did not get a performance improvement
when some tuples were value types
instead of reference types. This made
us feel better about our decision to
use reference types for tuple.
If the .NET System.Tuple<...> types were defined as structs, they would not be scalable. For instance, a ternary tuple of long integers currently scales as follows:
type Tuple3 = System.Tuple<int64, int64, int64>
type Tuple33 = System.Tuple<Tuple3, Tuple3, Tuple3>
sizeof<Tuple3> // Gets 4
sizeof<Tuple33> // Gets 4
If the ternary tuple were defined as a struct, the result would be as follows (based on a test example I implemented):
sizeof<Tuple3> // Would get 32
sizeof<Tuple33> // Would get 104
As tuples have built-in syntax support in F#, and they are used extremely often in this language, "struct" tuples would pose F# programmers at risk of writing inefficient programs without even being aware of it. It would happen so easily:
let t3 = 1L, 2L, 3L
let t33 = t3, t3, t3
In my opinion, "struct" tuples would cause a high probability of creating significant inefficiencies in everyday programming. On the other hand, the currently existing "class" tuples also cause certain inefficiencies, as mentioned by #Jon. However, I think that the product of "occurrence probability" times "potential damage" would be much higher with structs than it currently is with classes. Therefore, the current implementation is the lesser evil.
Ideally, there would be both "class" tuples and "struct" tuples, both with syntactic support in F#!
Edit (2017-10-07)
Struct tuples are now fully supported as follows:
Built into mscorlib (.NET >= 4.7) as System.ValueTuple
Available as NuGet for other versions
Syntactic support in C# >= 7
Syntactic support in F# >= 4.1
For 2-tuples, you can still always use the KeyValuePair<TKey,TValue> from earlier versions of the Common Type System. It's a value type.
A minor clarification to the Matt Ellis article would be that the difference in use semantics between reference and value types is only "slight" when immutability is in effect (which, of course, would be the case here). Nevertheless, I think it would have been best in the BCL design not to introduce the confusion of having Tuple cross over to a reference type at some threshold.
I don't know but if you have ever used F# Tuples are part of the language. If I made a .dll and returned a type of Tuples it be nice to have a type to put that in. I suspect now that F# is part of the language (.Net 4) some modifications to CLR were made to accommodate some common structures in F#
From http://en.wikibooks.org/wiki/F_Sharp_Programming/Tuples_and_Records
let scalarMultiply (s : float) (a, b, c) = (a * s, b * s, c * s);;
val scalarMultiply : float -> float * float * float -> float * float * float
scalarMultiply 5.0 (6.0, 10.0, 20.0);;
val it : float * float * float = (30.0, 50.0, 100.0)

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