Spring Data JPA 1.9.2 + Hibernate 4.3+ Issue - spring

Question

I use Spring 4.2.4, Spring Data Jpa 1.9.2 and faced a problem when try to update my hibernate-entitymanager dependency from 4.2.21 to any version from 4.3.0 to 5.0.6.
Issue is that crash when creating entityManagerFactory bean.
crashe occures in method factory.afterPropertiesSet();
If I remove this method then factory.getObject returns null...
there are source of my entityManagerFactory bean
#Configuration
#PropertySource("classpath:application.properties")
#EnableTransactionManagement
#EnableJpaRepositories("com.test.springtomcat.server.repositories")
public class PersistanceConfig {
#Bean
public DataSource dataSource(){
DriverManagerDataSource dataSource = new DriverManagerDataSource();
dataSource.setDriverClassName("org.postgresql.Driver");
dataSource.setUrl("jdbc:postgresql://localhost:5432/SpringDB");
dataSource.setUsername("postgres");
dataSource.setPassword("1");
return dataSource;
}
#Bean
#Autowired
public EntityManagerFactory entityManagerFactory(DataSource dataSource){
HibernateJpaVendorAdapter vendorAdapter = new HibernateJpaVendorAdapter();
vendorAdapter.setGenerateDdl(true);
vendorAdapter.setDatabasePlatform("org.hibernate.dialect.PostgreSQL82Dialect");
vendorAdapter.setDatabase(Database.POSTGRESQL);
LocalContainerEntityManagerFactoryBean factory = new LocalContainerEntityManagerFactoryBean();
factory.setJpaVendorAdapter(vendorAdapter);
factory.setPackagesToScan("com.test.springtomcat.server.repositories");
factory.setDataSource(dataSource);
factory.afterPropertiesSet();
return factory.getObject();
}
}
log is here
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in com.test.springtomcat.server.config.PersistanceConfig: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [javax.persistence.EntityManagerFactory]: Factory method 'entityManagerFactory' threw exception; nested exception is java.lang.IncompatibleClassChangeError: Implementing class
at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:599)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1123)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1018)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:510)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:772)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:839)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:538)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:446)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:328)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:107)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4748)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5197)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:155)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:724)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:700)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:718)
at org.apache.catalina.startup.HostConfig.manageApp(HostConfig.java:1660)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:300)
at com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:819)
at com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:463)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:413)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:300)
at com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:819)
at com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at javax.management.remote.rmi.RMIConnectionImpl.doOperation(RMIConnectionImpl.java:1471)
at javax.management.remote.rmi.RMIConnectionImpl.access$300(RMIConnectionImpl.java:76)
at javax.management.remote.rmi.RMIConnectionImpl$PrivilegedOperation.run(RMIConnectionImpl.java:1312)
at javax.management.remote.rmi.RMIConnectionImpl.doPrivilegedOperation(RMIConnectionImpl.java:1404)
at javax.management.remote.rmi.RMIConnectionImpl.invoke(RMIConnectionImpl.java:832)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:323)
at sun.rmi.transport.Transport$1.run(Transport.java:200)
at sun.rmi.transport.Transport$1.run(Transport.java:197)
at java.security.AccessController.doPrivileged(Native Method)
at sun.rmi.transport.Transport.serviceCall(Transport.java:196)
at sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:568)
at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(TCPTransport.java:826)
at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$256(TCPTransport.java:683)
at java.security.AccessController.doPrivileged(Native Method)
at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:682)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [javax.persistence.EntityManagerFactory]: Factory method 'entityManagerFactory' threw exception; nested exception is java.lang.IncompatibleClassChangeError: Implementing class
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:189)
at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:588)
... 59 more
Caused by: java.lang.IncompatibleClassChangeError: Implementing class
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:760)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at org.apache.catalina.loader.WebappClassLoaderBase.findClassInternal(WebappClassLoaderBase.java:2496)
at org.apache.catalina.loader.WebappClassLoaderBase.findClass(WebappClassLoaderBase.java:862)
at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1304)
at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1169)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.buildBootstrapServiceRegistry(EntityManagerFactoryBuilderImpl.java:311)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.<init>(EntityManagerFactoryBuilderImpl.java:166)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.<init>(EntityManagerFactoryBuilderImpl.java:149)
at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider$1.<init>(SpringHibernateJpaPersistenceProvider.java:49)
at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:49)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:343)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:318)
at com.test.springtomcat.server.config.PersistanceConfig.entityManagerFactory(PersistanceConfig.java:56)
at com.test.springtomcat.server.config.PersistanceConfig$$EnhancerBySpringCGLIB$$37bc929c.CGLIB$entityManagerFactory$0(<generated>)
at com.test.springtomcat.server.config.PersistanceConfig$$EnhancerBySpringCGLIB$$37bc929c$$FastClassBySpringCGLIB$$54d097b8.invoke(<generated>)
at org.springframework.cglib.proxy.MethodProxy.invokeSuper(MethodProxy.java:228)
at org.springframework.context.annotation.ConfigurationClassEnhancer$BeanMethodInterceptor.intercept(ConfigurationClassEnhancer.java:355)
at com.test.springtomcat.server.config.PersistanceConfig$$EnhancerBySpringCGLIB$$37bc929c.entityManagerFactory(<generated>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:162)
... 60 more
There are "standart" version incompatibility exception (java.lang.IncompatibleClassChangeError) when some interfaces or absract classes were changed. My entityManagerFactory creating method corresponding official documentation and even updated tutorial. Can anyone help me with this issue? what i doing wrong?
UPDATED
After manually undeploy and clean project have another exception NoClassDefFoundError.
log below
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in com.test.springtomcat.server.config.PersistanceConfig: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [javax.persistence.EntityManagerFactory]: Factory method 'entityManagerFactory' threw exception; nested exception is java.lang.NoClassDefFoundError: javax/transaction/SystemException
at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:599)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1123)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1018)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:510)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:772)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:839)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:538)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:446)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:328)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:107)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4748)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5197)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:155)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:724)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:700)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:718)
at org.apache.catalina.startup.HostConfig.manageApp(HostConfig.java:1660)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:300)
at com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:819)
at com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:463)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:413)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:300)
at com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:819)
at com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at javax.management.remote.rmi.RMIConnectionImpl.doOperation(RMIConnectionImpl.java:1471)
at javax.management.remote.rmi.RMIConnectionImpl.access$300(RMIConnectionImpl.java:76)
at javax.management.remote.rmi.RMIConnectionImpl$PrivilegedOperation.run(RMIConnectionImpl.java:1312)
at javax.management.remote.rmi.RMIConnectionImpl.doPrivilegedOperation(RMIConnectionImpl.java:1404)
at javax.management.remote.rmi.RMIConnectionImpl.invoke(RMIConnectionImpl.java:832)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:323)
at sun.rmi.transport.Transport$1.run(Transport.java:200)
at sun.rmi.transport.Transport$1.run(Transport.java:197)
at java.security.AccessController.doPrivileged(Native Method)
at sun.rmi.transport.Transport.serviceCall(Transport.java:196)
at sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:568)
at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(TCPTransport.java:826)
at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$256(TCPTransport.java:683)
at java.security.AccessController.doPrivileged(Native Method)
at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:682)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [javax.persistence.EntityManagerFactory]: Factory method 'entityManagerFactory' threw exception; nested exception is java.lang.NoClassDefFoundError: javax/transaction/SystemException
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:189)
at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:588)
... 59 more
Caused by: java.lang.NoClassDefFoundError: javax/transaction/SystemException
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at org.jboss.logging.Logger$1.run(Logger.java:2554)
at java.security.AccessController.doPrivileged(Native Method)
at org.jboss.logging.Logger.getMessageLogger(Logger.java:2529)
at org.jboss.logging.Logger.getMessageLogger(Logger.java:2516)
at org.hibernate.jpa.internal.HEMLogging.messageLogger(HEMLogging.java:28)
at org.hibernate.jpa.internal.HEMLogging.messageLogger(HEMLogging.java:24)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.<clinit>(EntityManagerFactoryBuilderImpl.java:100)
at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:49)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:343)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:318)
at com.test.springtomcat.server.config.PersistanceConfig.entityManagerFactory(PersistanceConfig.java:61)
at com.test.springtomcat.server.config.PersistanceConfig$$EnhancerBySpringCGLIB$$d721742f.CGLIB$entityManagerFactory$0(<generated>)
at com.test.springtomcat.server.config.PersistanceConfig$$EnhancerBySpringCGLIB$$d721742f$$FastClassBySpringCGLIB$$e2401753.invoke(<generated>)
at org.springframework.cglib.proxy.MethodProxy.invokeSuper(MethodProxy.java:228)
at org.springframework.context.annotation.ConfigurationClassEnhancer$BeanMethodInterceptor.intercept(ConfigurationClassEnhancer.java:355)
at com.test.springtomcat.server.config.PersistanceConfig$$EnhancerBySpringCGLIB$$d721742f.entityManagerFactory(<generated>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:162)
... 60 more
Caused by: java.lang.ClassNotFoundException: javax.transaction.SystemException
at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1335)
at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1169)
... 83 more

Answer 1

I used Spring 4.2.3.RELEASE + Spring Data Jpa 1.9.1.RELEASE + Hibernate 5.0.4.Final and works fine.
This IncompatibleClassChangeError can be many things make sure that you don't have other hibernate versions in the classpath.
What causes java.lang.IncompatibleClassChangeError?
https://docs.oracle.com/javase/7/docs/api/java/lang/IncompatibleClassChangeError.html

Answer 2

I found solution! as I described in question the IncompatibleClassChangeError wa a phantom exception that changed with NoClassDefFoundError exception after clean and manually undeploy previous version from tomcat (thanks to user2669657) .
NoClassDefFoundError resolved by added dependency on jta 1.1. (Java Transaction API) that required by the hibernate-entityManager but maven does't known that.