Error installing graphlab - macos

I tried installing graphlab using the pip command where we enter the email address and product key in the command. I tried upgrading it. I am using the sudo pip command and I am working on a Mac. I am getting this exception every time and it fails. I can install the dmg but that is easy. I want to know how to fix this exception. The exception is as follows:
Exception:
Traceback (most recent call last):
File "/Users/karthik/Library/Python/2.7/lib/python/site-packages/pip/basecommand.py", line 209, in main
status = self.run(options, args)
File "/Users/karthik/Library/Python/2.7/lib/python/site-packages/pip/commands/install.py", line 317, in run
prefix=options.prefix_path,
File "/Users/karthik/Library/Python/2.7/lib/python/site-packages/pip/req/req_set.py", line 725, in install
requirement.uninstall(auto_confirm=True)
File "/Users/karthik/Library/Python/2.7/lib/python/site-packages/pip/req/req_install.py", line 756, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Users/karthik/Library/Python/2.7/lib/python/site-packages/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/Users/karthik/Library/Python/2.7/lib/python/site-packages/pip/utils/__init__.py", line 266, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 302, in move
copy2(src, real_dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 131, in copy2
copystat(src, dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 103, in copystat
os.chflags(dst, st.st_flags)
OSError: [Errno 1] Operation not permitted: '/tmp/pip-zVJZnq-uninstall/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/six-1.4.1-py2.7.egg-info'

if you are on ipython notebook, try :
!pip install

Related

Unable to install lxml on OSX using pip: 550 Failed to change directory

I'm trying to install lxml on OSX El Capitan using pip3; lots of googling turned up using STATIC_DEPS, but unfortunately I'm now getting an error that to me seems to imply a missing file in the package:
$ STATIC_DEPS=true pip3 install lxml
Collecting lxml
Using cached https://files.pythonhosted.org/packages/54/a6/43be8cf1cc23e3fa208cab04ba2f9c3b7af0233aab32af6b5089122b44cd/lxml-4.2.3.tar.gz
Complete output from command python setup.py egg_info:
Building lxml version 4.2.3.
Latest version of zlib is 1.2.11
Downloading zlib into libs/zlib-1.2.11.tar.gz from http://zlib.net/zlib-1.2.11.tar.gz
Unpacking zlib-1.2.11.tar.gz into build/tmp
Latest version of libiconv is 1.15
Downloading libiconv into libs/libiconv-1.15.tar.gz from ftp://ftp.gnu.org/pub/gnu/libiconv/libiconv-1.15.tar.gz
Unpacking libiconv-1.15.tar.gz into build/tmp
Latest version of libxml2 is 2.9.8
Downloading libxml2 into libs/libxml2-2.9.8.tar.gz from ftp://xmlsoft.org/libxml2/libxml2-2.9.8.tar.gz
Unpacking libxml2-2.9.8.tar.gz into build/tmp
Latest version of libxslt is 1.1.33
Downloading libxslt into libs/libxslt-1.1.33.tar.gz from ftp://xmlsoft.org/libxml2/libxslt-1.1.33.tar.gz
Traceback (most recent call last):
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 2417, in retrfile
self.ftp.cwd(file)
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/ftplib.py", line 631, in cwd
return self.voidcmd(cmd)
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/ftplib.py", line 278, in voidcmd
return self.voidresp()
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/ftplib.py", line 251, in voidresp
resp = self.getresp()
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/ftplib.py", line 246, in getresp
raise error_perm(resp)
ftplib.error_perm: 550 Failed to change directory.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 1540, in ftp_open
fp, retrlen = fw.retrfile(file, type)
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 2419, in retrfile
raise URLError('ftp error: %r' % reason) from reason
urllib.error.URLError: <urlopen error ftp error: error_perm('550 Failed to change directory.')>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/private/var/folders/hp/_4p52dfd7s9cf49p86sg1l_w0000gp/T/pip-install-yjxema7x/lxml/setup.py", line 241, in <module>
**setup_extra_options()
File "/private/var/folders/hp/_4p52dfd7s9cf49p86sg1l_w0000gp/T/pip-install-yjxema7x/lxml/setup.py", line 150, in setup_extra_options
STATIC_CFLAGS, STATIC_BINARIES)
File "/private/var/folders/hp/_4p52dfd7s9cf49p86sg1l_w0000gp/T/pip-install-yjxema7x/lxml/setupinfo.py", line 75, in ext_modules
multicore=OPTION_MULTICORE)
File "/private/var/folders/hp/_4p52dfd7s9cf49p86sg1l_w0000gp/T/pip-install-yjxema7x/lxml/buildlibxml.py", line 390, in build_libxml2xslt
libxslt_dir = unpack_tarball(download_libxslt(download_dir, libxslt_version), build_dir)
File "/private/var/folders/hp/_4p52dfd7s9cf49p86sg1l_w0000gp/T/pip-install-yjxema7x/lxml/buildlibxml.py", line 218, in download_libxslt
version_re, filename, version=version)
File "/private/var/folders/hp/_4p52dfd7s9cf49p86sg1l_w0000gp/T/pip-install-yjxema7x/lxml/buildlibxml.py", line 291, in download_library
urlretrieve(full_url, dest_filename)
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 247, in urlretrieve
with contextlib.closing(urlopen(url, data)) as fp:
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 222, in urlopen
return opener.open(url, data, timeout)
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 525, in open
response = self._open(req, data)
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 543, in _open
'_open', req)
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 503, in _call_chain
result = func(*args)
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 1551, in ftp_open
raise exc.with_traceback(sys.exc_info()[2])
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 1540, in ftp_open
fp, retrlen = fw.retrfile(file, type)
File "/usr/local/Cellar/python/3.7.0/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 2419, in retrfile
raise URLError('ftp error: %r' % reason) from reason
urllib.error.URLError: <urlopen error ftp error: URLError("ftp error: error_perm('550 Failed to change directory.')")>
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /private/var/folders/hp/_4p52dfd7s9cf49p86sg1l_w0000gp/T/pip-install-yjxema7x/lxml/
As the command failed on Downloading libxslt into libs/libxslt-1.1.33.tar.gz from ftp://xmlsoft.org/libxml2/libxslt-1.1.33.tar.gz
I browsed the ftp://xmlsoft.org/libxml2/ site which doesn't have ftp://xmlsoft.org/libxml2/libxslt-1.1.33.tar.gz, only ftp://xmlsoft.org/libxml2/libxslt-1.1.33-rc1.tar.gz.
Is this the problem, and if so is there a way to override it in the package? Or am I missing something?
You can bypass FTP errors while still having the STATIC_DEPS functionality by downloading libxml2 and libxslt manually and building from setup.py.
Pasted from the lxml website:
...If you want to use
specific versions, or want to prevent any online access, you can
download both tar.gz release files yourself, place them into a
subdirectory libs in the lxml distribution, and call setup.py with the
desired target versions like this:
python setup.py build --static-deps \
--libxml2-version=2.9.1 \
--libxslt-version=1.1.28 \
sudo python setup.py install

Installing GDAL on Google Cloud Datalab

I am having trouble installing GDAL on Google Cloud Datalab. When I run:
!pip install gdal
I get the following error
Collecting gdal
Using cached GDAL-2.2.4.tar.gz
Complete output from command python setup.py egg_info:
running egg_info
creating pip-egg-info/GDAL.egg-info
writing pip-egg-info/GDAL.egg-info/PKG-INFO
writing top-level names to pip-egg-info/GDAL.egg-info/top_level.txt
writing dependency_links to pip-egg-info/GDAL.egg-
info/dependency_links.txt
writing manifest file 'pip-egg-info/GDAL.egg-info/SOURCES.txt'
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-umhRKK/gdal/setup.py", line 342, in <module>
**extra )
File "/usr/local/lib/python2.7/dist-packages/setuptools/__init__.py",
line 129, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/usr/lib/python2.7/distutils/dist.py", line 953, in
run_commands
self.run_command(cmd)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/local/lib/python2.7/dist-packages/setuptools/command/egg_info.py", line 278, in run
self.find_sources()
File "/usr/local/lib/python2.7/dist-packages/setuptools/command/egg_info.py", line 293, in find_sources
mm.run()
File "/usr/local/lib/python2.7/dist-packages/setuptools/command/egg_info.py", line 524, in run
self.add_defaults()
File "/usr/local/lib/python2.7/dist-packages/setuptools/command/egg_info.py", line 560, in add_defaults
sdist.add_defaults(self)
File "/usr/local/lib/python2.7/dist-packages/setuptools/command/py36compat.py", line 36, in add_defaults
self._add_defaults_ext()
File "/usr/local/lib/python2.7/dist-packages/setuptools/command/py36compat.py", line 119, in _add_defaults_ext
build_ext = self.get_finalized_command('build_ext')
File "/usr/lib/python2.7/distutils/cmd.py", line 312, in get_finalized_command
cmd_obj.ensure_finalized()
File "/usr/lib/python2.7/distutils/cmd.py", line 109, in ensure_finalized
self.finalize_options()
File "/tmp/pip-build-umhRKK/gdal/setup.py", line 217, in finalize_options
self.gdaldir = self.get_gdal_config('prefix')
File "/tmp/pip-build-umhRKK/gdal/setup.py", line 191, in get_gdal_config
return fetch_config(option)
File "/tmp/pip-build-umhRKK/gdal/setup.py", line 144, in fetch_config
raise gdal_config_error, e""")
File "<string>", line 4, in <module>
__main__.gdal_config_error: [Errno 2] No such file or directory
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-umhRKK/gdal/
Same thing goes for :
!pip install gdal==2.2
or:
!pip install python-gdal
and a few other similar commands I have tried. The fix I discovered which was to update the setup-tools still gives me this problem after updating it.
What is the problem?
As per the Datalab documentation on how to add a Python library to Cloud Datalab, there are three approaches that you can follow to perform an installation of a third-party library in Cloud Datalab:
Use !pip install lib-name. This has obviously not worked for you, even by applying some of the troubleshooting fixes you have found after looking around.
Use the code in # Option 2 below to specify the command to run in the startup script of the Datalab instance, then proceed to restart it.
Use your own Docker customized container, inherited from the Datalab Docker container. I know this option is the most complex, but it may be the most appropriate one for packages that require a more flexible customization, such as the gdal one you are having issues with.
Script to be used in option 2:
#Option 2
%%bash
echo "pip install lib-name" >> /content/datalab/.config/startup.sh
cat /content/datalab/.config/startup.sh

"sudo pip install" is showing an error code

I am getting an error when I try to pip install:
Found existing installation: numpy 1.8.0rc1
DEPRECATION: Uninstalling a distutils installed project (numpy) has been deprecated and will be removed in a future version. This is due to the fact that uninstalling a distutils project will only partially uninstall the project.
Uninstalling numpy-1.8.0rc1:
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/commands/install.py", line 342, in run
prefix=options.prefix_path,
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_set.py", line 778, in install
requirement.uninstall(auto_confirm=True)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_install.py", line 754, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 302, in move
copy2(src, real_dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 131, in copy2
copystat(src, dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 103, in copystat
os.chflags(dst, st.st_flags)
OSError: [Errno 1] Operation not permitted: '/tmp/pip-u1pNrS-uninstall/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy-1.8.0rc1-py2.7.egg-info'

Can not install the openstacksdk

When I install the openstack sdk in my mac:
pip install openstacksdk
I get the below error:
....
Found existing installation: six 1.4.1
DEPRECATION: Uninstalling a distutils installed project (six) has been deprecated and will be removed in a future version. This is due to the fact that uninstalling a distutils project will only partially uninstall the project.
Uninstalling six-1.4.1:
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/commands/install.py", line 342, in run
prefix=options.prefix_path,
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_set.py", line 778, in install
requirement.uninstall(auto_confirm=True)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_install.py", line 754, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 302, in move
copy2(src, real_dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 131, in copy2
copystat(src, dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 103, in copystat
os.chflags(dst, st.st_flags)
OSError: [Errno 1] Operation not permitted: '/var/folders/qp/h96_smbd55ggtzwvml8wpl9h0000gn/T/pip-FA4Y1Y-uninstall/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/six-1.4.1-py2.7.egg-info'
Why I can not install the openstacksdk ? I have tried many times.
EDIT
I use the sudo to install, still get the below error:
Found existing installation: six 1.4.1
DEPRECATION: Uninstalling a distutils installed project (six) has been deprecated and will be removed in a future version. This is due to the fact that uninstalling a distutils project will only partially uninstall the project.
Uninstalling six-1.4.1:
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/commands/install.py", line 342, in run
prefix=options.prefix_path,
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_set.py", line 778, in install
requirement.uninstall(auto_confirm=True)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_install.py", line 754, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 302, in move
copy2(src, real_dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 131, in copy2
copystat(src, dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 103, in copystat
os.chflags(dst, st.st_flags)
OSError: [Errno 1] Operation not permitted: '/tmp/pip-ipaUQQ-uninstall/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/six-1.4.1-py2.7.egg-info'
You see there is the Operation not permitted error, but is under the /tmp directory.
You do not have the permission to operate the last file, you can use sudo:
sudo pip install openstacksdk

Trouble Getting VirtualEnvWrapper working on Cygwin

I'm running Windows 10, Python 3.4 and just installed Cygwin. I installed virtualenv and virtualenvwrapper using pip. I updated my ~/.bashrc to have the following:
export WORKON_HOME=~/.virtualenvs
export VIRTUALENVWRAPPER_VIRTUALENV=c:/python35/scripts/virtualenv
source c:/python35/scripts/virtualenvwrapper.sh
But unfortunately, I keep getting an error message very time I open Cygwin. The following error comes up:
path = C:\Cygwin64\tmp/virtualenvwrapper-initialize-hook-XXXXXXXXXX
lpPathBuffer = C:\Cygwin64\tmp\
szTempName = C:\Cygwin64\tmp\tmp66C6.tmp
path = C:\Cygwin64\tmp\tmp66C6.tmp
fd = 3
virtualenvwrapper.user_scripts creating C:\home\ccordero\.virtualenvs\initialize
virtualenvwrapper.user_scripts creating C:\home\ccordero\.virtualenvs\premkproject
Traceback (most recent call last):
File "C:\Python35\lib\runpy.py", line 184, in _run_module_as_main
"__main__", mod_spec)
File "C:\Python35\lib\runpy.py", line 85, in _run_code
exec(code, run_globals)
File "C:\Python35\lib\site-packages\virtualenvwrapper\hook_loader.py", line 223, in <module>
main()
File "C:\Python35\lib\site-packages\virtualenvwrapper\hook_loader.py", line 138, in main
output = open(options.script_filename, "w")
OSError: [Errno 22] Invalid argument: 'C:\\Cygwin64\\tmp/virtualenvwrapper-initialize-hook-XXXXXXXXXX\r'
virtualenvwrapper.sh: There was a problem running the initialization hooks.
Please help!

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