I am trying to process the Large Text file using spark, after installing the Spark cluster in Ec2 with 8 Gb of memory. How do I put my 100 GB of file in the hdfs to be able to process it using spark-scala script?
I am using following command
./hadoop fs -put /user/myuser/example.txt /src
but its throwing an Exception as follows
WARN hdfs.DFSClient: DataStreamer Exception: org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /user/myuser/example.txt could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1920)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:783)
at sun.reflect.GeneratedMethodAccessor5.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
at org.apache.hadoop.ipc.Client.call(Client.java:1113)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:229)
at com.sun.proxy.$Proxy1.addBlock(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:85)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:62)
at com.sun.proxy.$Proxy1.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DFSClient.java:3720)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(DFSClient.java:3580)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2600(DFSClient.java:2783)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSClient.java:3023)
WARN hdfs.DFSClient: Error Recovery for null bad datanode[0] nodes == null
WARN hdfs.DFSClient: Could not get block locations. Source file "/user/myuser/example.txt" - Aborting...
put: java.io.IOException: File /user/myuser/example.txt could only be replicated to 0 nodes, instead of 1
ERROR hdfs.DFSClient: Failed to close file /user/myuser/example.txt
org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /user/myuser/example.txt could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1920)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:783)
at sun.reflect.GeneratedMethodAccessor5.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
at org.apache.hadoop.ipc.Client.call(Client.java:1113)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:229)
at com.sun.proxy.$Proxy1.addBlock(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:85)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:62)
at com.sun.proxy.$Proxy1.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DFSClient.java:3720)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(DFSClient.java:3580)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2600(DFSClient.java:2783)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSClient.java:3023)
Related
I am trying to setup Hadoop cluster on Amazon EC2. I was able to format namenode. The output of 'jps' command is following in the namenode:
5826 NameNode
6312 JobTracker
6192 SecondaryNameNode
8266 Jps
and in the slave node:
5452 DataNode
5699 Jps
5609 TaskTracker
So, I assume hadoop is running. While I am trying to copy data from local directory to HDFS with the command
hadoop fs -mkdir /user/ubuntu/clusters
hadoop fs -copyFromLocal clusters /user/ubuntu/clusters
I am getting data replication warning and other errors. The log is following
14/11/18 18:41:12 WARN hdfs.DFSClient: DataStreamer Exception: org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /user/ubuntu/clusters/clusters could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1920)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:783)
at sun.reflect.GeneratedMethodAccessor6.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
at org.apache.hadoop.ipc.Client.call(Client.java:1113)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:229)
at com.sun.proxy.$Proxy1.addBlock(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:85)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:62)
at com.sun.proxy.$Proxy1.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DFSClient.java:3720)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(DFSClient.java:3580)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2600(DFSClient.java:2783)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSClient.java:3023)
14/11/18 18:41:12 WARN hdfs.DFSClient: Error Recovery for null bad datanode[0] nodes == null
14/11/18 18:41:12 WARN hdfs.DFSClient: Could not get block locations. Source file "/user/ubuntu/clusters/clusters" - Aborting...
copyFromLocal: java.io.IOException: File /user/ubuntu/clusters/clusters could only be replicated to 0 nodes, instead of 1
14/11/18 18:41:12 ERROR hdfs.DFSClient: Failed to close file /user/ubuntu/clusters/clusters
org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /user/ubuntu/clusters/clusters could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1920)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:783)
at sun.reflect.GeneratedMethodAccessor6.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
at org.apache.hadoop.ipc.Client.call(Client.java:1113)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:229)
at com.sun.proxy.$Proxy1.addBlock(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:85)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:62)
at com.sun.proxy.$Proxy1.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DFSClient.java:3720)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(DFSClient.java:3580)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2600(DFSClient.java:2783)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSClient.java:3023)
Any help will be highly appreciated.
Thanks.
One of the best step by step guide to create multinode cluster in Amazon EC2 is Here
It explains each and every step. You are already done with first part seems, Go through the second part which will help you..
Hope it helps you..
When i try to got a query SELECT * FROM A
I get all of information but when try to getting a query that exists a column name (or a join) SELECT a FROM A It returns some Exceptions:
Total MapReduce jobs = 1
Launching Job 1 out of 1
Number of reduce tasks is set to 0 since there's no reduce operator
org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /tmp/hive-merza/hive_2014-06-25_09-12-19_567_6884805431385202274/-mr-10003/3a481893-3b7e-4cb7-bca7-d5ad103e3aa8 could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1920)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:783)
at sun.reflect.GeneratedMethodAccessor7.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
Continuing ...
org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /tmp/hadoop-merza/mapred/staging/merza/.staging/job_201406250859_0004/libjars/hbase-0.94.16.jar could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1920)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:783)
at sun.reflect.GeneratedMethodAccessor7.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
at org.apache.hadoop.ipc.Client.call(Client.java:1113)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:229)
at $Proxy12.addBlock(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:85)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:62)
at $Proxy12.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DFSClient.java:3720)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(DFSClient.java:3580)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2600(DFSClient.java:2783)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSClient.java:3023)
Job Submission failed with exception 'org.apache.hadoop.ipc.RemoteException(java.io.IOException: File /tmp/hadoop-merza/mapred/staging/merza/.staging/job_201406250859_0004/libjars/hbase-0.94.16.jar could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1920)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:783)
at sun.reflect.GeneratedMethodAccessor7.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
)'
FAILED: Execution Error, return code 1 from org.apache.hadoop.hive.ql.exec.MapRedTask
HADOOP 1.2.1
HBASE 0.94.16
HIVE 0.11.0
NOTE:my mapred and dfs is running.
The reason select * from table works and select a from table doesn't is because when u do a select * you need all the data which is lying there on hdfs hence it doesn't run's any M/R job
but in case of select a it has to run m/r job to strip the extra columns.
So effectively the issue is you are not able M/R job on your cluster, this issue is usually caused by insufficient space.
please check the total capacity of your cluster and used, remaining ratio using
hdfs dfsadmin -report
also check dfs.datanode.du.reserved in the hdfs-site.xml, if this value is larger than your remained capacity
look for other possible causes explained here
Solved!
Must be add some jar files to env-hive.sh
export HIVE_AUX_JARS_PATH=/.../hbase-***.jar,/.../hbase-handler***.jar,/.../zookeeperp***.jar
I have just installed hadoop (single-node) and I'm trying to run a simple test problem. My code runs fine in Java, but when I try to run it in hadoop, I get the following error:
$hadoop jar build/libs/mapreduce-hello-0.1.0.jar mapreduce.AggregateJob data output
14/05/15 15:37:30 ERROR security.UserGroupInformation: PriviledgedActionException as:pmedilla cause:org.apache.hadoop.ipc.RemoteException: org.apache.hadoop.mapred.JobTrackerNotYetInitializedException: JobTracker is not yet RUNNING
at org.apache.hadoop.mapred.JobTracker.checkJobTrackerState(JobTracker.java:5199)
at org.apache.hadoop.mapred.JobTracker.getNewJobId(JobTracker.java:3543)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
Exception in thread "main" org.apache.hadoop.ipc.RemoteException: org.apache.hadoop.mapred.JobTrackerNotYetInitializedException: JobTracker is not yet RUNNING
at org.apache.hadoop.mapred.JobTracker.checkJobTrackerState(JobTracker.java:5199)
at org.apache.hadoop.mapred.JobTracker.getNewJobId(JobTracker.java:3543)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
at org.apache.hadoop.ipc.Client.call(Client.java:1113)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:229)
at org.apache.hadoop.mapred.$Proxy2.getNewJobId(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:85)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:62)
at org.apache.hadoop.mapred.$Proxy2.getNewJobId(Unknown Source)
at org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:944)
at org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:936)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.mapred.JobClient.submitJobInternal(JobClient.java:936)
at org.apache.hadoop.mapreduce.Job.submit(Job.java:550)
at org.apache.hadoop.mapreduce.Job.waitForCompletion(Job.java:580)
at mapreduce.AggregateJob.run(AggregateJob.java:32)
at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:65)
at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:79)
at mapreduce.AggregateJob.main(AggregateJob.java:36)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.util.RunJar.main(RunJar.java:160)
When I run jps, I get:
32643 Jps
32041
31288 SecondaryNameNode
31445 TaskTracker
31353 JobTracker
31106 NameNode
I notice that the data node is missing (or blank). Any ideas on how to solve the problem?
all. I run a hive query runs to 97% and exception shows that org.apache.hadoop.hdfs.server.namenode.LeaseExpiredException: No lease on sth.
Can anyone kindly explain the reason why this error occurred?
And this is a single user Hive cluster environment.
Thank you in advance.
2013-01-02 22:16:17,833 ERROR org.apache.hadoop.hdfs.DFSClient: Exception closing file /tmp/hive-hadoop/hive_2013-01-01_21-21-32_067_6367259756570557828/_task_tmp.-ext-10002/_tmp.000004_1 : org.apache.hadoop.ipc.RemoteException: org.apache.hadoop.hdfs.server.namenode.LeaseExpiredException: No lease on /tmp/hive-hadoop/hive_2013-01-01_21-21-32_067_6367259756570557828/_task_tmp.-ext-10002/_tmp.000004_1 File does not exist. Holder DFSClient_attempt_201301012114_0002_m_000004_1 does not have any open files.
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.checkLease(FSNamesystem.java:1631)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.checkLease(FSNamesystem.java:1622)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.completeFileInternal(FSNamesystem.java:1677)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.completeFile(FSNamesystem.java:1665)
at org.apache.hadoop.hdfs.server.namenode.NameNode.complete(NameNode.java:718)
at sun.reflect.GeneratedMethodAccessor13.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:563)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1388)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1384)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1121)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1382)
org.apache.hadoop.ipc.RemoteException: org.apache.hadoop.hdfs.server.namenode.LeaseExpiredException: No lease on /tmp/hive-hadoop/hive_2013-01-01_21-21-32_067_6367259756570557828/_task_tmp.-ext-10002/_tmp.000004_1 File does not exist. Holder DFSClient_attempt_201301012114_0002_m_000004_1 does not have any open files.
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.checkLease(FSNamesystem.java:1631)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.checkLease(FSNamesystem.java:1622)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.completeFileInternal(FSNamesystem.java:1677)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.completeFile(FSNamesystem.java:1665)
at org.apache.hadoop.hdfs.server.namenode.NameNode.complete(NameNode.java:718)
at sun.reflect.GeneratedMethodAccessor13.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:563)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1388)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1384)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1121)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1382)
at org.apache.hadoop.ipc.Client.call(Client.java:1070)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:225)
at $Proxy2.complete(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:82)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:59)
at $Proxy2.complete(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.closeInternal(DFSClient.java:3897)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.close(DFSClient.java:3812)
at org.apache.hadoop.hdfs.DFSClient$LeaseChecker.close(DFSClient.java:1345)
at org.apache.hadoop.hdfs.DFSClient.close(DFSClient.java:275)
at org.apache.hadoop.hdfs.DistributedFileSystem.close(DistributedFileSystem.java:328)
at org.apache.hadoop.fs.FileSystem$Cache.closeAll(FileSystem.java:1446)
at org.apache.hadoop.fs.FileSystem.closeAll(FileSystem.java:277)
at org.apache.hadoop.fs.FileSystem$ClientFinalizer.run(FileSystem.java:260)
Does your hive query create parallel MR jobs ?
I had the same problem, and found that: LeaseExpiredException: No lease error on HDFS :
When the job ends he deletes /data/work/ folder. If few jobs are running in parallel the deletion will also delete the files of the another job. actually I need to delete /data/work/.
In other words this exception is thrown when the job try to access to files which are not existed anymore
SET hive.exec.max.dynamic.partitions=100000;
SET hive.exec.max.dynamic.partitions.pernode=100000;
user "hadoop" is runnnig jobtracker and tasktracker on cluster, but what if other Linux users want to submit their jobs?
I've followed this documentation, http://hadoop.apache.org/docs/r1.0.4/service_level_auth.html#Hadoop+Services+and+Configuration+Properties
add following into "core-site.xml":
<property>
<name>hadoop.security.authorization</name>
<value>true</value>
</property>
and for conf file "hadoop-policy.xml", I add "hadoopGroup" to "security.job.submission.protocol.acl", my account "qingya.shu" belong to this group.
but when i run hadoop as qingya.shu, encountered error like:
12/11/09 12:57:29 INFO util.NativeCodeLoader: Loaded the native-hadoop library
12/11/09 12:57:29 INFO input.FileInputFormat: Total input paths to process : 1
12/11/09 12:57:29 WARN snappy.LoadSnappy: Snappy native library not loaded
12/11/09 12:57:29 INFO mapred.JobClient: Cleaning up the staging area file:/lustre/hadoop/user/qingya.shu/.staging/job_201211082024_0008
12/11/09 12:57:29 ERROR security.UserGroupInformation: PriviledgedActionException as:qingya.shu cause:org.apache.hadoop.ipc.RemoteException: java.io.IOException: java.io.FileNotFoundException: File file:/lustre/hadoop/user/qingya.shu/.staging/job_201211082024_0008/job.xml does not exist.
at org.apache.hadoop.mapred.JobTracker.submitJob(JobTracker.java:3943)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:563)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1388)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1384)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1121)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1382)
Caused by: java.io.FileNotFoundException: File file:/lustre/hadoop/user/qingya.shu/.staging/job_201211082024_0008/job.xml does not exist.
at org.apache.hadoop.fs.RawLocalFileSystem.getFileStatus(RawLocalFileSystem.java:397)
at org.apache.hadoop.fs.FilterFileSystem.getFileStatus(FilterFileSystem.java:251)
at org.apache.hadoop.mapred.JobInProgress.<init>(JobInProgress.java:406)
at org.apache.hadoop.mapred.JobTracker.submitJob(JobTracker.java:3941)
... 11 more
org.apache.hadoop.ipc.RemoteException: java.io.IOException: java.io.FileNotFoundException: File file:/lustre/hadoop/user/qingya.shu/.staging/job_201211082024_0008/job.xml does not exist.
at org.apache.hadoop.mapred.JobTracker.submitJob(JobTracker.java:3943)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:563)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1388)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1384)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1121)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1382)
Caused by: java.io.FileNotFoundException: File file:/lustre/hadoop/user/qingya.shu/.staging/job_201211082024_0008/job.xml does not exist.
at org.apache.hadoop.fs.RawLocalFileSystem.getFileStatus(RawLocalFileSystem.java:397)
at org.apache.hadoop.fs.FilterFileSystem.getFileStatus(FilterFileSystem.java:251)
at org.apache.hadoop.mapred.JobInProgress.<init>(JobInProgress.java:406)
at org.apache.hadoop.mapred.JobTracker.submitJob(JobTracker.java:3941)
... 11 more
at org.apache.hadoop.ipc.Client.call(Client.java:1070)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:225)
at org.apache.hadoop.mapred.$Proxy1.submitJob(Unknown Source)
at org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:921)
at org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:850)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1121)
at org.apache.hadoop.mapred.JobClient.submitJobInternal(JobClient.java:850)
at org.apache.hadoop.mapreduce.Job.submit(Job.java:500)
at org.apache.hadoop.mapreduce.Job.waitForCompletion(Job.java:530)
at org.apache.hadoop.examples.WordCount.main(WordCount.java:67)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.apache.hadoop.util.ProgramDriver$ProgramDescription.invoke(ProgramDriver.java:68)
at org.apache.hadoop.util.ProgramDriver.driver(ProgramDriver.java:139)
at org.apache.hadoop.examples.ExampleDriver.main(ExampleDriver.java:64)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.apache.hadoop.util.RunJar.main(RunJar.java:156)
notice that lustre is used as distributed file system instead of HDFS.
can anyone help me?
try this:
<property>
<name>hadoop.security.authorization</name>
<value>simple</value>
</property>