Having difficulty writing a script to sort words - bash

Question

I am dealing with sorting words in Bash according to a given argument. I am given either argument -r, -a , -v or -h and according to it there are options to sort the words, as you can see at my "help".
Somehow, if I pass the argument -r it creates an error. I really don't understand what I am doing wrong, as if[["$arg"=="-a"]] works, but I have to use case somehow.
Here is my code:
#!/bin/bash
# Natalie Zubkova , zubkonat
# zubkonat#cvut.fel.cz , LS
#help
help="This script will calculate occurances of words in a given file, and it will sort them according to the given argument in following order> \n
without parametre = increasing order according to a number of occurance\n
-r = decreasing order according to a number of occurance\n
-a = in alphabetical increasing order\n
-a -r = in alphabetical decreasing order\n
There are also special cases of the given parametre, when the script is not sorting but:\n
-h = for obtaining help \n
-v = for obtaining a number of this task "
# this function will divide a given chain into a words, so we can start calculating the occurances, we also convert all the capital letters to the small ones by - tr
a=0;
r=0;
EXT=0;
if [ "$1" == "-h" ]; then
echo $help
exit 0
fi
if [ "$2" == "-h" ]; then
echo $help
exit 0
fi
if [ "$1" == "-v" ]; then
echo "5"
exit 0
fi
if [ "$2" == "-v" ]; then
echo "5"
exit 0
fi
function swap {
while read x y; do
echo "$y" "$x";
done
}
function clearAll {
sed -e 's/[^a-z]/\n/gI' | tr '[A-Z]' '[a-z]' | sort | uniq -c |awk '{i++; if(i!=1) print $2" "$1}' #swap
}
for arg do
case "$arg" in
"-a")
a=1
;;
"-r")
r=1
;;
"-v")
echo "5" #number of task is 5
exit 0
;;
"-h")
echo $help
exit 0
;;
"-?")
echo "invalid parametre, please display a help using argument h"
exit 0
;;
esac
done
#Sort according to parametres -a and -r
function sortWords {
if [[ a -eq 1 ]]; then
if [[ r -eq 0 ]]; then
clearAll | sort -nk1
fi
fi
if [[ a -eq 1 ]]; then
if [[ r -eq 1 ]]; then
clearAll | sort -nk1 -r
fi
fi
if [[ r -eq 1 ]]; then
if [[ a -eq 0 ]]; then
clearAll | sort -nk2 -r
fi
fi
if [[ a -eq 0 ]]; then
if [[ r -eq 0 ]]; then
clearAll | sort -nk2
fi
fi
}
#code is from Stackoverflow.com
function cat-all {
while IFS= read -r file
do
if [[ ! -z "$file" ]]; then
cat "$file"
fi
done
}
#histogram
hist=""
for arg do
if [[ ! -e "$arg" ]]; then
EXT=1;
echo "A FILE DOESNT EXIST" >&2
continue;
elif [[ ! -f "$arg" ]]; then
EXT=1;
echo "A FILE DOESNT EXIST" >&2
continue;
elif [[ ! -r "$arg" ]]; then
EXT=1;
echo "A FILE DOESNT EXIST" >&2
continue;
fi
done
for arg do
hist="$hist""$arg""\n"
done
echo -e "$hist" | cat-all | sortWords
exit $EXT;
Here is what our upload system which does some test to see if our program works says:
Test #6
> b5.sh -r ./easy.txt
ERROR: script output is wrong:
--- expected output
+++ script stdout
## --- line 1 (167 lines) ; +++ no lines ##
-the 89
-steam 46
-a 39
-of 37
-to 35
...
script written 484 lines, while 484 lines are expected
script error output:
A FILE DOESNT EXIST
cat: invalid option -- 'r'
Try `cat --help' for more information.
script exit value: 1
ERROR: Interrupted due to failed test
If anyone could help me I would really appreciate it.

Answer 1

You forgot to move the parameter index position with shift:
"-r")
r=1
shift
;;
shift above moves to the next command line arg: ./easy.txt in your case.
Without it, read -r file will read -r instead of the file name.