java.lang.NoSuchMethodError: org.hibernate.cfg.Environment.verifyProperties(Ljava/util/Map;)V - spring

Question

Can anybody please let me know about the problem from the stack trace. Have tried with different dependencies in but nothing seems to work. Please find the stack trace and xml configuration.
2016-06-14 10:54:53.796 WARN 5493 --- [ost-startStop-1] o.a.c.loader.WebappClassLoaderBase : The web application [ROOT] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
java.lang.Object.wait(Native Method)
java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:143)
com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:43)
2016-06-14 10:54:53.810 ERROR 5493 --- [ main] o.s.boot.SpringApplication : Application startup failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in class path resource [org/springframework/boot/autoconfigure/orm/jpa/HibernateJpaAutoConfiguration.class]: Invocation of init method failed; nested exception is java.lang.NoSuchMethodError: org.hibernate.cfg.Environment.verifyProperties(Ljava/util/Map;)V
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1578) ~[spring-beans-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545) ~[spring-beans-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:482) ~[spring-beans-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306) ~[spring-beans-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302) ~[spring-beans-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1054) ~[spring-context-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:829) ~[spring-context-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:538) ~[spring-context-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:118) ~[spring-boot-1.3.4.RELEASE.jar:1.3.4.RELEASE]
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:766) [spring-boot-1.3.4.RELEASE.jar:1.3.4.RELEASE]
at org.springframework.boot.SpringApplication.createAndRefreshContext(SpringApplication.java:361) [spring-boot-1.3.4.RELEASE.jar:1.3.4.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:307) [spring-boot-1.3.4.RELEASE.jar:1.3.4.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1191) [spring-boot-1.3.4.RELEASE.jar:1.3.4.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1180) [spring-boot-1.3.4.RELEASE.jar:1.3.4.RELEASE]
at com.report.ReportApplication.main(ReportApplication.java:15) [classes/:na]
Caused by: java.lang.NoSuchMethodError: org.hibernate.cfg.Environment.verifyProperties(Ljava/util/Map;)V
at org.hibernate.boot.registry.StandardServiceRegistryBuilder.build(StandardServiceRegistryBuilder.java:245) ~[hibernate-core-4.3.11.Final.jar:4.3.11.Final]
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.buildServiceRegistry(EntityManagerFactoryBuilderImpl.java:1035) ~[hibernate-entitymanager-4.3.11.Final.jar:4.3.11.Final]
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:842) ~[hibernate-entitymanager-4.3.11.Final.jar:4.3.11.Final]
at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:60) ~[spring-orm-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:343) ~[spring-orm-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:319) ~[spring-orm-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1637) ~[spring-beans-4.2.6.RELEASE.jar:4.2.6.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1574) ~[spring-beans-4.2.6.RELEASE.jar:4.2.6.RELEASE]
... 16 common frames omitted
Pom.xml file -
<parent>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-parent</artifactId>
<version>1.3.4.RELEASE</version>
<relativePath/> <!-- lookup parent from repository -->
</parent>
<dependencies>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-web</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-data-jpa</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-jdbc</artifactId>
</dependency>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>com.googlecode.json-simple</groupId>
<artifactId>json-simple</artifactId>
</dependency>
<dependency>
<groupId>org.json</groupId>
<artifactId>json</artifactId>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>jstl</artifactId>
</dependency>
<!-- Dependency for rendering jsp pages -->
<dependency>
<groupId>org.apache.tomcat.embed</groupId>
<artifactId>tomcat-embed-jasper</artifactId>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>tomcat</groupId>
<artifactId>jasper-compiler</artifactId>
<version>5.5.23</version>
</dependency>
<dependency>
<groupId>tomcat</groupId>
<artifactId>jasper-runtime</artifactId>
<version>5.5.23</version>
</dependency>
<dependency>
<groupId>tomcat</groupId>
<artifactId>jasper-compiler-jdt</artifactId>
<version>5.5.23</version>
</dependency>
<!-- Dependency for rendering jsp pages -->
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-validator</artifactId>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-validator-annotation-processor</artifactId>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-c3p0</artifactId>
<version>5.2.0.Final</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-tools</artifactId>
<version>4.0.0-CR1</version>
</dependency>
<dependency>
<groupId>org.hibernate.common</groupId>
<artifactId>hibernate-commons-annotations</artifactId>
<version>5.0.1.Final</version>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-maven-plugin</artifactId>
</plugin>
</plugins>
</build>

Answer 1

The problem was with jars of multiple versions. The project also had some jars manually added apart from maven dependency. Have removed the manual hibernate jar files and it done. The project is running without any issue.

Answer 2

Remove all multiple version of jars and add new set of jars by downloading the latest version of jars.Then refresh the project and recompile.
link for downloading hibernate jars is hibernate.org/orm/downloads/