My first attempt to build uhd was to use a script I had written that had worked in the past on two laptops running 14.04. After that, I went back here:
http://files.ettus.com/manual/page_build_guide.html#build_instructions_unix
After that, I went here:
https://kb.ettus.com/Building_and_Installing_the_USRP_Open-Source_Toolchain_(UHD_and_GNU_Radio)_on_Linux
I get the following compile errors. I'm at a loss, as I have install all of libboost, so I'm not sure what is missing. I'm building on the maint branch. I am on a new computer running 16.04.
[ 61%] Built target uhd
[ 61%] Linking CXX executable sync_to_gps
CMakeFiles/sync_to_gps.dir/sync_to_gps.cpp.o: In function `_main(int, char**)':
sync_to_gps.cpp:(.text+0x6de): undefined reference to `boost::program_options::options_description::options_description(std::string const&, unsigned int, unsigned int)'
CMakeFiles/sync_to_gps.dir/sync_to_gps.cpp.o: In function `boost::program_options::typed_value<std::string, char>::xparse(boost::any&, std::vector<std::string, std::allocator<std::string> > const&) const':
sync_to_gps.cpp:(.text._ZNK5boost15program_options11typed_valueISscE6xparseERNS_3anyERKSt6vectorISsSaISsEE[_ZNK5boost15program_options11typed_valueISscE6xparseERNS_3anyERKSt6vectorISsSaISsEE]+0x1f): undefined reference to `boost::program_options::validate(boost::any&, std::vector<std::string, std::allocator<std::string> > const&, std::string*, int)'
CMakeFiles/sync_to_gps.dir/sync_to_gps.cpp.o: In function `std::vector<std::string, std::allocator<std::string> > boost::program_options::to_internal<std::string>(std::vector<std::string, std::allocator<std::string> > const&)':
sync_to_gps.cpp:(.text._ZN5boost15program_options11to_internalISsEESt6vectorISsSaISsEERKS2_IT_SaIS5_EE[_ZN5boost15program_options11to_internalISsEESt6vectorISsSaISsEERKS2_IT_SaIS5_EE]+0x7d): undefined reference to `boost::program_options::to_internal(std::string const&)'
CMakeFiles/sync_to_gps.dir/sync_to_gps.cpp.o: In function `boost::program_options::basic_parsed_options<char> boost::program_options::parse_command_line<char>(int, char const* const*, boost::program_options::options_description const&, int, boost::function1<std::pair<std::string, std::string>, std::string const&>)':
sync_to_gps.cpp:(.text._ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairISsSsERKSsEE[_ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairISsSsERKSsEE]+0x15e): undefined reference to `boost::program_options::detail::cmdline::cmdline(std::vector<std::string, std::allocator<std::string> > const&)'
sync_to_gps.cpp:(.text._ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairISsSsERKSsEE[_ZN5boost15program_options18parse_command_lineIcEENS0_20basic_parsed_optionsIT_EEiPKPKS3_RKNS0_19options_descriptionEiNS_9function1ISt4pairISsSsERKSsEE]+0x1ef): undefined reference to `boost::program_options::detail::cmdline::set_additional_parser(boost::function1<std::pair<std::string, std::string>, std::string const&>)'
CMakeFiles/sync_to_gps.dir/sync_to_gps.cpp.o: In function `boost::program_options::typed_value<std::string, char>::name() const':
sync_to_gps.cpp:(.text._ZNK5boost15program_options11typed_valueISscE4nameEv[_ZNK5boost15program_options11typed_valueISscE4nameEv]+0x29): undefined reference to `boost::program_options::arg'
CMakeFiles/sync_to_gps.dir/sync_to_gps.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueISscEE[_ZTVN5boost15program_options11typed_valueISscEE]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::string, std::allocator<std::string> > const&, bool) const'
../lib/libuhd.so.003.010: undefined reference to `boost::archive::text_iarchive_impl<boost::archive::text_iarchive>::load(std::string&)'
../lib/libuhd.so.003.010: undefined reference to `boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > > > const&)'
../lib/libuhd.so.003.010: undefined reference to `boost::filesystem::path_traits::dispatch(boost::filesystem::directory_entry const&, std::string&)'
../lib/libuhd.so.003.010: undefined reference to `boost::re_detail::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::construct_init(boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > const&, boost::regex_constants::_match_flags)'
../lib/libuhd.so.003.010: undefined reference to `boost::archive::text_oarchive_impl<boost::archive::text_oarchive>::save(std::string const&)'
collect2: error: ld returned 1 exit status
examples/CMakeFiles/sync_to_gps.dir/build.make:107: recipe for target 'examples/sync_to_gps' failed
make[2]: *** [examples/sync_to_gps] Error 1
CMakeFiles/Makefile2:393: recipe for target 'examples/CMakeFiles/sync_to_gps.dir/all' failed
make[1]: *** [examples/CMakeFiles/sync_to_gps.dir/all] Error 2
Makefile:160: recipe for target 'all' failed
make: *** [all] Error 2
I had a similar issue which turned out to be an older version of GCC still installed on my Ubuntu system being called. Look at /usr/bin/gcc and /usr/bin/g++ and see if they're linked to /usr/bin/gcc-5 and /usr/bin/g++-5 respectively.
Related
I am working on linking Tensorflow2 shared libraries (*.so) files into my C++ program. The libtensorflow_cc and libtensorflow_framework.so use bazel-3.7.2 and gcc7.3 and is linked to another library I have ‘libmyproj.so’. I want to link this libmyproj.so to my main program which are built with the same gcc7.3. I have tried using the -D_GLIBCXX_USE_CXX11_ABI=0 flag for ABI compatibility (from https://www.tensorflow.org/install/source and Converting std::__cxx11::string to std::string) but without any success. I am stuck at the following error:
undefined reference to ml_model::ml_model(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)' undefined reference to ml_model::preprocess_data(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::vector<float, std::allocator<float> >, int&, int&, std::vector<int, std::allocator<int> >&)' undefined reference to ml_model::get_predictions(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::vector<std::pair<int, int>, std::allocator<std::pair<int, int> > int, std::vector<int, std::allocator<int> >)'
in function std::__cxx11::basic_string<char, std::char_traits,
std::allocator >* tensorflow::internal::MakeCheckOpString<long,
int>(long const&, int const&, char const*)': undefined reference to tensorflow::internal::CheckOpMessageBuilder::NewString[abi:cxx11]()'
Any suggestions on why this is happening?
Check if the libstdc++ version is correct。 Your problem may be the tensorflow_cc.so compiler with higher libstdc++ version, but your build env libstdc++ is lower, so some symbols will not be found.
Get libstdc++ version:
bash$ /sbin/ldconfig -p | grep stdc++
libstdc++.so.6 (libc6,x86_64) => /lib/x86_64-linux-gnu/libstdc++.so.6
bash$ ls -l /lib/x86_64-linux-gnu/libstdc++.so.6
lrwxrwxrwx 1 root root 19 Jan 10 2021 /lib/x86_64-linux-gnu/libstdc++.so.6 -> libstdc++.so.6.0.28
The symlink points to a versioned file, in this case 6.0.28.
Update libstdc++; how to do this exactly depends on your distro, but instructions should not be hard to find in Google.
I am getting below error while building static library uhd-types and linking with boost libraries v1.74 with memory sanitizer flag -fsanitize=memory.
[ 63%] Built target uhd-types
[ 65%] Linking CXX executable ../../bin/unit_tests
/usr/bin/ld: ../../lib/libuhd-types.a(device_addr.cpp.o): in function `boost::re_detail_107400::cpp_regex_traits_implementation<char>::lookup_collatename(char const*, char const*) const':
/root/include/boost/regex/v4/cpp_regex_traits.hpp:680: undefined reference to `boost::re_detail_107400::lookup_default_collate_name(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)'
/usr/bin/ld: ../../lib/libuhd-types.a(device_addr.cpp.o): in function `boost::re_detail_107400::basic_regex_parser<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::fail(boost::regex_constants::error_type, long, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, long)':
/root/include/boost/regex/v4/basic_regex_parser.hpp:245: undefined reference to `boost::regex_error::regex_error(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, boost::regex_constants::error_type, long)'
/usr/bin/ld: ../../lib/libuhd-types.a(device_addr.cpp.o): in function `boost::re_detail_107400::basic_regex_creator<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::fixup_recursions(boost::re_detail_107400::re_syntax_base*)':
/root/include/boost/regex/v4/basic_regex_creator.hpp:788: undefined reference to `boost::regex_error::regex_error(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, boost::regex_constants::error_type, long)'
/usr/bin/ld: /root//include/boost/regex/v4/basic_regex_creator.hpp:877: undefined reference to `boost::regex_error::regex_error(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, boost::regex_constants::error_type, long)'
/usr/bin/ld: ../../lib/libuhd-types.a(device_addr.cpp.o): in function `boost::re_detail_107400::basic_regex_creator<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::create_startmaps(boost::re_detail_107400::re_syntax_base*)':
/root/include/boost/regex/v4/basic_regex_creator.hpp:943: undefined reference to `boost::regex_error::regex_error(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, boost::regex_constants::error_type, long)'
/usr/bin/ld: ../../lib/libuhd-types.a(device_addr.cpp.o): in function `boost::re_detail_107400::basic_regex_creator<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::create_startmap(boost::re_detail_107400::re_syntax_base*, unsigned char*, unsigned int*, unsigned char)':
/root/include/boost/regex/v4/basic_regex_creator.hpp:1156: undefined reference to `boost::regex_error::regex_error(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, boost::regex_constants::error_type, long)'
clang-10: error: linker command failed with exit code 1 (use -v to see invocation)
I already linking uhd-types to boost libraries using target_link_libraries.
I am trying to build DeepLabv2's version of caffe.
I am using anaconda2 for package management.
I get the following errors:
CXX/LD -o .build_release/tools/upgrade_net_proto_text.bin
/usr/bin/ld: warning: libhdf5.so.10, needed by /home/asim/anaconda2/lib/libmatio.so, not found (try using -rpath or -rpath-link)
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::Message::DebugString[abi:cxx11]() const'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::MessageFactory::InternalRegisterGeneratedFile(char const*, void (*)(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&))'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::internal::WireFormatLite::WriteStringMaybeAliased(int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, google::protobuf::io::CodedOutputStream*)'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::internal::WireFormatLite::ReadBytes(google::protobuf::io::CodedInputStream*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::MessageLite::ParseFromString(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::Message::GetTypeName[abi:cxx11]() const'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::io::CodedOutputStream::WriteStringWithSizeToArray(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::internal::fixed_address_empty_string[abi:cxx11]'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::Message::InitializationErrorString[abi:cxx11]() const'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::internal::NameOfEnum[abi:cxx11](google::protobuf::EnumDescriptor const*, int)'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::internal::WireFormatLite::WriteBytesMaybeAliased(int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, google::protobuf::io::CodedOutputStream*)'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::internal::AssignDescriptors(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, google::protobuf::internal::MigrationSchema const*, google::protobuf::Message const* const*, unsigned int const*, google::protobuf::MessageFactory*, google::protobuf::Metadata*, google::protobuf::EnumDescriptor const**, google::protobuf::ServiceDescriptor const**)'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::internal::WireFormatLite::WriteString(int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, google::protobuf::io::CodedOutputStream*)'
/home/asim/anaconda2/lib/libmatio.so: undefined reference to `H5Rdereference'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::MessageLite::SerializeToString(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*) const'
.build_release/lib/libcaffe.so: undefined reference to `google::protobuf::internal::ArenaStringPtr::AssignWithDefault(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const*, google::protobuf::internal::ArenaStringPtr)'
collect2: error: ld returned 1 exit status
Makefile:621: recipe for target '.build_release/tools/upgrade_net_proto_text.bin' failed
make: *** [.build_release/tools/upgrade_net_proto_text.bin] Error 1
I tried to add Library Directories to the Makefile.
Specifically
LIBRARY_DIRS += /home/asim/anaconda2/lib /lib/x86_64-linux-gnu/
But it is not working.
I have already configured and built Caffe from the ground up in CPU_ONLY and GPU_ONLY modes (with the respective samples and tools); and fairly satisfied with the out-of-the-box results.
However, I am starting my own project derived from the cpp_classification example, and having difficulties in building it independent of the overall Caffe build system. As such, I have gone back to the cpp_classification example and have been working to build that as a standalone (just to ensure that I am not leaving anything out) and encountering similar errors.
I sharing the contents of my build-errors output and the CMakeLists.txt with you in the hopes that someone else who has successfully hoisted the cpp_classification example can provide guidance.
I have narrowed down the build-errors I am getting to the following:
Scanning dependencies of target cpp_classification
[ 50%] Building CXX object CMakeFiles/cpp_classification.dir/classification.cpp.o
[100%] Linking CXX executable cpp_classification
CMakeFiles/cpp_classification.dir/classification.cpp.o: In function `Classifier::Classifier(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/home/rudycazabon/caffe/examples/cpp_classification/classification.cpp:62: undefined reference to `caffe::Net<float>::Net(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, caffe::Phase, int, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const*, caffe::Net<float> const*)'
/home/rudycazabon/caffe/examples/cpp_classification/classification.cpp:63: undefined reference to `caffe::Net<float>::CopyTrainedLayersFrom(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
CMakeFiles/cpp_classification.dir/classification.cpp.o: In function `Classifier::SetMean(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/home/rudycazabon/caffe/examples/cpp_classification/classification.cpp:124: undefined reference to `caffe::BlobProto::BlobProto()'
/home/rudycazabon/caffe/examples/cpp_classification/classification.cpp:129: undefined reference to `caffe::Blob<float>::FromProto(caffe::BlobProto const&, bool)'
/home/rudycazabon/caffe/examples/cpp_classification/classification.cpp:135: undefined reference to `caffe::Blob<float>::mutable_cpu_data()'
/home/rudycazabon/caffe/examples/cpp_classification/classification.cpp:124: undefined reference to `caffe::BlobProto::~BlobProto()'
/home/rudycazabon/caffe/examples/cpp_classification/classification.cpp:124: undefined reference to `caffe::BlobProto::~BlobProto()'
CMakeFiles/cpp_classification.dir/classification.cpp.o: In function `Classifier::Predict(cv::Mat const&)':
/home/rudycazabon/caffe/examples/cpp_classification/classification.cpp:156: undefined reference to `caffe::Blob<float>::Reshape(int, int, int, int)'
/home/rudycazabon/caffe/examples/cpp_classification/classification.cpp:158: undefined reference to `caffe::Net<float>::Reshape()'
/home/rudycazabon/caffe/examples/cpp_classification/classification.cpp:165: undefined reference to `caffe::Net<float>::Forward(float*)'
/home/rudycazabon/caffe/examples/cpp_classification/classification.cpp:169: undefined reference to `caffe::Blob<float>::cpu_data() const'
CMakeFiles/cpp_classification.dir/classification.cpp.o: In function `Classifier::WrapInputLayer(std::vector<cv::Mat, std::allocator<cv::Mat> >*)':
/home/rudycazabon/caffe/examples/cpp_classification/classification.cpp:184: undefined reference to `caffe::Blob<float>::mutable_cpu_data()'
CMakeFiles/cpp_classification.dir/classification.cpp.o: In function `Classifier::Preprocess(cv::Mat const&, std::vector<cv::Mat, std::allocator<cv::Mat> >*)':
/home/rudycazabon/caffe/examples/cpp_classification/classification.cpp:227: undefined reference to `caffe::Blob<float>::cpu_data() const'
CMakeFiles/cpp_classification.dir/classification.cpp.o: In function `caffe::Caffe::set_mode(caffe::Caffe::Brew)':
/home/rudycazabon/caffe/distribute/include/caffe/common.hpp:148: undefined reference to `caffe::Caffe::Get()'
CMakeFiles/cpp_classification.dir/classification.cpp.o: In function `caffe::ReadProtoFromBinaryFileOrDie(char const*, google::protobuf::Message*)':
/home/rudycazabon/caffe/distribute/include/caffe/util/io.hpp:78: undefined reference to `caffe::ReadProtoFromBinaryFile(char const*, google::protobuf::Message*)'
collect2
My corresponding CMakeList.txt is as follows:
cmake_minimum_required(VERSION 3.6)
project(cpp_classification)
list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake")
set(CAFFE_HOME ~/caffe/distribute)
find_package(OpenCV REQUIRED)
find_package(Caffe REQUIRED)
find_package(GTest REQUIRED)
find_package(glog REQUIRED)
find_package(Boost REQUIRED COMPONENTS system)
find_package(Protobuf REQUIRED)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++11")
set(SOURCE_FILES classification.cpp)
include_directories(${CAFFE_HOME}/include ${Boost_INCLUDE_DIRS} )
link_directories(${CAFFE_HOME}/lib ${Boost_LIBRARY_DIRS})
add_executable(cpp_classification
${SOURCE_FILES}
${GLOG_INCLUDE_DIR}
${Caffe_INCLUDE_DIR}
${Protobuf_INCLUDE_DIR})
TARGET_LINK_LIBRARIES(cpp_classification
${OpenCV_LIBS}
${Boost_LIBRARIES}
${GLOG_LIBRARY}
${CAFFE_LIBRARY}
${Protobuf_LIBRARY})
try with
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -D_GLIBCXX_USE_CXX11_ABI=0")
It tells gcc to use the old ABI for <string>.
I'm trying to compile the Litecoin source (https://github.com/litecoin-project/litecoin.git). Doing this in windows with VmWare OSX 10.9.1(64bit).
I cloned it and in terminal ran:
make -f makefile.osx USE_UPNP=-
It spits out this error:
Undefined symbols for architecture x86_64:
"boost::program_options::to_internal(std::string const&)", referenced from:
boost::program_options::detail::basic_config_file_iterator<char>::getline(std::string&) in util.o
"boost::program_options::detail::common_config_file_iterator::common_config_file_iterator(std::set<std::string, std::less<std::string>, std::allocator<std::string> > const&, bool)", referenced from:
boost::program_options::detail::basic_config_file_iterator<char>::basic_config_file_iterator(std::istream&, std::set<std::string, std::less<std::string>, std::allocator<std::string> > const&, bool) in util.o
"Db::verify(char const*, char const*, std::ostream*, unsigned int)", referenced from:
CDBEnv::Verify(std::string, bool (*)(CDBEnv&, std::string)) in db.o
CDBEnv::Salvage(std::string, bool, std::vector<std::pair<std::vector<unsigned char, std::allocator<unsigned char> >, std::vector<unsigned char, std::allocator<unsigned char> > >, std::allocator<std::pair<std::vector<unsigned char, std::allocator<unsigned char> >, std::vector<unsigned char, std::allocator<unsigned char> > > > >&) in db.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [litecoind] Error 1
I've been googling like crazy but can't seem to find a proper solution.