import caffe, error _message.so - macos

I installed caffe from source code on my Mac os x, but when I type this command:
python -c "import caffe"
I got this error:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/Users/junhao.wen/Hao/Docker/Caffe/Caffe_source/caffe/python/caffe/__init__.py", line 1, in <module>
from .pycaffe import Net, SGDSolver, NesterovSolver, AdaGradSolver, RMSPropSolver, AdaDeltaSolver, AdamSolver
File "/Users/junhao.wen/Hao/Docker/Caffe/Caffe_source/caffe/python/caffe/pycaffe.py", line 15, in <module>
import caffe.io
File "/Users/junhao.wen/Hao/Docker/Caffe/Caffe_source/caffe/python/caffe/io.py", line 8, in <module>
from caffe.proto import caffe_pb2
File "/Users/junhao.wen/Hao/Docker/Caffe/Caffe_source/caffe/python/caffe/proto/caffe_pb2.py", line 7, in <module>
from google.protobuf import descriptor as _descriptor
File "/Users/junhao.wen/anaconda2/lib/python2.7/site-packages/protobuf-3.1.0-py2.7-macosx-10.6-x86_64.egg/google/protobuf/descriptor.py", line 46, in <module>
from google.protobuf.pyext import _message
ImportError: dlopen(/Users/junhao.wen/anaconda2/lib/python2.7/site-packages/protobuf-3.1.0-py2.7-macosx-10.6-x86_64.egg/google/protobuf/pyext/_message.so, 2): Symbol not found: __ZNK6google8protobuf10TextFormat17FieldValuePrinter10PrintBytesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE
Referenced from: /Users/junhao.wen/anaconda2/lib/python2.7/site-packages/protobuf-3.1.0-py2.7-macosx-10.6-x86_64.egg/google/protobuf/pyext/_message.so
Expected in: flat namespace
in /Users/junhao.wen/anaconda2/lib/python2.7/site-packages/protobuf-3.1.0-py2.7-macosx-10.6-x86_64.egg/google/protobuf/pyext/_message.so
Any suggestion will be appreciated:)
Thanks in advance

Make sure that the Python path is pointing to $CAFFE_HOME/Python

Related

Tensorflow gives unexpected keyword argument 'blacklist' error

This code was running well in Ubuntu using conda. Then I had to move to a windows environment where I tried to create a similar conda environment. When I try running it, the error message is
Traceback (most recent call last):
File "C:\Users\biplavc\Documents\AoI_work\envs\dist_AoI_ver5\main_tf.py", line 30, in <module>
from create_graph_1 import *
File "C:\Users\biplavc\Documents\AoI_work\envs\dist_AoI_ver5\create_graph_1.py", line 16, in <module>
from tf_environment import *
File "C:\Users\biplavc\Documents\AoI_work\envs\dist_AoI_ver5\tf_environment.py", line 38, in <module>
from tf_agents.environments import py_environment
File "D:\Anaconda\envs\tf\lib\site-packages\tf_agents\environments\__init__.py", line 26, in <module>
from tf_agents.environments import utils
File "D:\Anaconda\envs\tf\lib\site-packages\tf_agents\environments\utils.py", line 28, in <module>
from tf_agents.policies import random_py_policy
File "D:\Anaconda\envs\tf\lib\site-packages\tf_agents\policies\__init__.py", line 20, in <module>
from tf_agents.policies import epsilon_greedy_policy
File "D:\Anaconda\envs\tf\lib\site-packages\tf_agents\policies\epsilon_greedy_policy.py", line 33, in <module>
from tf_agents.policies import greedy_policy
File "D:\Anaconda\envs\tf\lib\site-packages\tf_agents\policies\greedy_policy.py", line 42, in <module>
#gin.configurable(module='tf_agents', blacklist=['policy'])
TypeError: configurable() got an unexpected keyword argument 'blacklist'
I also couldn't come across any other errors similar to this and any help to sort this will be greatly appreciated.

Error trying to confirm Brownie was installed successfully

After installing dependencies I typed "brownie" to make sure that everything was installed successfully but instead I got an error. (Any comments/help appreciated)Will attach the code below:
injusstice#Justices-MacBook-Pro ~ % brownie
Traceback (most recent call last):
File "/Users/injusstice/.local/bin/brownie", line 5, in <module>
from brownie._cli.__main__ import main
File "/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/brownie/__init__.py", line 6, in <module>
from brownie.project import compile_source, run
File "/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/brownie/project/__init__.py", line 3, in <module>
from .main import ( # NOQA 401
File "/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/brownie/project/main.py", line 44, in <module>
from brownie.network import web3
File "/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/brownie/network/__init__.py", line 4, in <module>
from .account import Accounts
File "/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/brownie/network/account.py", line 37, in <module>
from .rpc import Rpc
File "/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/brownie/network/rpc/__init__.py", line 16, in <module>
from brownie.network.state import Chain
File "/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/brownie/network/state.py", line 23, in <module>
from .transaction import TransactionReceipt
File "/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/brownie/network/transaction.py", line 15, in <module>
import black
File "/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/black/__init__.py", line 13, in <module>
import regex as re
File "/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/regex/__init__.py", line 1, in <module>
from .regex import *
File "/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/regex/regex.py", line 419, in <module>
import regex._regex_core as _regex_core
File "/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/regex/_regex_core.py", line 21, in <module>
import regex._regex as _regex
ImportError: dlopen(/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/regex/_regex.cpython-38-darwin.so, 2): no suitable image found. Did find:
/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/regex/_regex.cpython-38-darwin.so: code signature in (/Users/injusstice/.local/pipx/venvs/eth-brownie/lib/python3.8/site-packages/regex/_regex.cpython-38-darwin.so) not valid for use in process using Library Validation: Trying to load an unsigned library

Clickhouse-mysql does not run

I have install all the requirements, when I try to run the clickhouse-mysql I get the following error:
Traceback (most recent call last):
File "/usr/local/bin/clickhouse-mysql", line 7, in <module>
from clickhouse_mysql import main
File "/usr/local/lib/python3.6/site-packages/clickhouse_mysql/__init__.py", line 4, in <module>
from .main import Main
File "/usr/local/lib/python3.6/site-packages/clickhouse_mysql/main.py", line 21, in <module>
from clickhouse_mysql.config import Config
File "/usr/local/lib/python3.6/site-packages/clickhouse_mysql/config.py", line 4, in <module>
from clickhouse_mysql.reader.mysqlreader import MySQLReader
File "/usr/local/lib/python3.6/site-packages/clickhouse_mysql/reader/mysqlreader.py", line 8, in <module>
from pymysqlreplication import BinLogStreamReader
File "/usr/local/lib/python3.6/site-packages/pymysqlreplication/__init__.py", line 23, in <module>
from .binlogstream import BinLogStreamReader
File "/usr/local/lib/python3.6/site-packages/pymysqlreplication/binlogstream.py", line 9, in <module>
from pymysql.util import int2byte
ModuleNotFoundError: No module named 'pymysql.util'
I have the required module installed but it seems there is an issue with it.
Please advise.
This is due to this commit https://github.com/PyMySQL/PyMySQL/commit/744da2f5b853702c27be0ab10dad3312bed11030 Try to install PyMySQL==0.10.1

Broken Conda after install of Anaconda for OS X w/ Python 3.6

I installed anaconda 4.3.0 for OSX, Python 3.6. Everything with the install seemed to go fine. However when I try to start jupiter notebook I get:
Traceback (most recent call last):
File "/Users/joe/anaconda3/bin/jupyter-notebook", line 4, in <module>
import notebook.notebookapp
File "/Users/joe/anaconda3/lib/python3.6/site-packages/notebook/notebookapp.py", line 63, in <module>
from .services.contents.manager import ContentsManager
File "/Users/joe/anaconda3/lib/python3.6/site-packages/notebook/services/contents/manager.py", line 16, in <module>
from nbformat import sign, validate, ValidationError
File "/Users/joe/anaconda3/lib/python3.6/site-packages/nbformat/__init__.py", line 33, in <module>
from .validator import validate, ValidationError
File "/Users/joe/anaconda3/lib/python3.6/site-packages/nbformat/validator.py", line 12, in <module>
from jsonschema import ValidationError
File "/Users/joe/anaconda3/lib/python3.6/site-packages/jsonschema/__init__.py", line 18, in <module>
from jsonschema.validators import (
File "/Users/joe/anaconda3/lib/python3.6/site-packages/jsonschema/validators.py", line 8, in <module>
import requests
File "/Users/joe/anaconda3/lib/python3.6/site-packages/requests/__init__.py", line 52, in <module>
from .packages.urllib3.contrib import pyopenssl
File "/Users/joe/anaconda3/lib/python3.6/site-packages/requests/packages/urllib3/contrib/pyopenssl.py", line 47, in <module>
import OpenSSL.SSL
File "/Users/joe/anaconda3/lib/python3.6/site-packages/OpenSSL/__init__.py", line 8, in <module>
from OpenSSL import rand, crypto, SSL
File "/Users/joe/anaconda3/lib/python3.6/site-packages/OpenSSL/crypto.py", line 13, in <module>
from cryptography.hazmat.primitives.asymmetric import dsa, rsa
File "/Users/joe/anaconda3/lib/python3.6/site-packages/cryptography/hazmat/primitives/asymmetric/rsa.py", line 14, in <module>
from cryptography.hazmat.backends.interfaces import RSABackend
File "/Users/joe/anaconda3/lib/python3.6/site-packages/cryptography/hazmat/backends/__init__.py", line 7, in <module>
import pkg_resources
File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/pkg_resources.py", line 1423, in <module>
register_loader_type(importlib_bootstrap.SourceFileLoader, DefaultProvider)
AttributeError: module 'importlib._bootstrap' has no attribute 'SourceFileLoader'
When I try to run conda I get
Traceback (most recent call last):
File "/Users/joe/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 617, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/Users/joe/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 85, in _main
from ..base.context import context
File "/Users/joe/anaconda3/lib/python3.6/site-packages/conda/base/context.py", line 17, in
from .._vendor.auxlib.path import expand
File "/Users/joe/anaconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/path.py", line 8, in
import pkg_resources
File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/pkg_resources.py", line 1423, in
register_loader_type(importlib_bootstrap.SourceFileLoader, DefaultProvider)
AttributeError: module 'importlib._bootstrap' has no attribute 'SourceFileLoader'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Users/joe/anaconda3/bin/conda", line 6, in
sys.exit(conda.cli.main())
File "/Users/joe/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 167, in main
return conda_exception_handler(_main, *args)
File "/Users/joe/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 633, in conda_exception_handler
print_unexpected_error_message(e)
File "/Users/joe/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
from conda.base.context import context
File "/Users/joe/anaconda3/lib/python3.6/site-packages/conda/base/context.py", line 17, in
from .._vendor.auxlib.path import expand
File "/Users/joe/anaconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/path.py", line 8, in
import pkg_resources
File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/pkg_resources.py", line 1423, in
register_loader_type(importlib_bootstrap.SourceFileLoader, DefaultProvider)
AttributeError: module 'importlib._bootstrap' has no attribute 'SourceFileLoader'
I did a simple remove and reinstall but the problem persists after the reinstall. I would try to run anaconda-clean but since conda does not work, I can't install it. Any advice?

ImportError:cannot import name symbol_database

I'm new to caffe.When I try the caffe,the problem occurs.Anyone can help?Thanks in advance!
>>> import google.protobuf
>>> import caffe
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/llzxo/caffe/python/caffe/__init__.py", line 1, in <module>
from .pycaffe import Net, SGDSolver, NesterovSolver, AdaGradSolver, RMSPropSolver, AdaDeltaSolver, AdamSolver
File "/home/llzxo/caffe/python/caffe/pycaffe.py", line 15, in <module>
import caffe.io
File "/home/llzxo/caffe/python/caffe/io.py", line 8, in <module>
from caffe.proto import caffe_pb2
File "/home/llzxo/caffe/python/caffe/proto/caffe_pb2.py", line 10, in <module>
from google.protobuf import symbol_database as _symbol_database
ImportError: cannot import name symbol_database
It may be due to version incompatibility of your installed protobuf. Try to upgrade protobuf by:
sudo pip install --upgrade protobuf

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