Related
My data model is related to patient records. At the highest level is the Patient, then their information such as Lab Panels and the individual rows of the results of the panel. So it looks like this: {Patient:{Labs:[{Results:[{}]}]}}
I am able to successfully create the two nested objects Labs nested in Patient and Results nested in Labs, populate it, and query it. What I am unable to successfully do is create a query that constrains the results to a single Lab, and then match by more than one row in the Results object.
An example is attached, where I only want labs that are "Lipid Panel" and the results are HDL <= 46 and LDL >= 140.
Any suggestions?
Example Index
PUT localhost:9200/testpipeline
{
"aliases": {},
"mappings": {
"dynamic": "false",
"properties": {
"ageAtFirstEncounter": {
"type": "float"
},
"dateOfBirth": {
"type": "date"
},
"gender": {
"type": "keyword"
},
"id": {
"type": "float"
},
"labs": {
"type": "nested",
"properties": {
"ageOnDateOfService": {
"type": "float"
},
"date": {
"type": "date"
},
"encounterId": {
"type": "keyword"
},
"id": {
"type": "keyword"
},
"isEdVisit": {
"type": "boolean"
},
"labPanelName": {
"type": "keyword"
},
"labPanelNameId": {
"type": "float"
},
"labPanelSourceName": {
"type": "text",
"store": true
},
"personId": {
"type": "keyword"
},
"processingLogId": {
"type": "float"
},
"results": {
"type": "nested",
"properties": {
"dataType": {
"type": "keyword"
},
"id": {
"type": "float"
},
"labTestName": {
"type": "keyword"
},
"labTestNameId": {
"type": "float"
},
"resultAsNumber": {
"type": "float"
},
"resultAsText": {
"type": "keyword"
},
"sourceName": {
"type": "text",
"store": true
},
"unit": {
"type": "keyword"
}
}
}
}
},
"personId": {
"type": "keyword"
},
"processingLogId": {
"type": "float"
},
"race": {
"type": "keyword"
}
}
}
}
Example Document
PUT localhost:9200/testpipeline/_doc/274746
{
"id": 274746,
"personId": "10005786.000000",
"processingLogId": 51,
"gender": "Female",
"dateOfBirth": "1945-01-01T00:00:00",
"ageAtFirstEncounter": 76,
"labs": [
{
"isEdVisit": false,
"labPanelSourceName": "Lipid Panel",
"dataType": "LAB",
"ageOnDateOfService": 76.9041,
"results": [
{
"unit": "mg/dL",
"labTestNameId": 160,
"labTestName": "HDL",
"sourceName": "HDL",
"resultAsNumber": 46.0,
"resultAsText": "46",
"id": 2150284
},
{
"unit": "mg/dL",
"labTestNameId": 158,
"labTestName": "LDL",
"sourceName": "LDL",
"resultAsNumber": 144.0,
"resultAsText": "144.00",
"id": 2150286
}
],
"id": "9ab9ba84-580b-f2d2-4d32-25658ea5f1bf",
"sourceId": 2150278,
"personId": "10003783.000000",
"encounterId": "39617217.000000",
"processingLogId": 51,
"date": "2021-11-08T00:00:00"
}
],
"lastModified": "2022-03-24T10:21:29.8682784-05:00"
}
Example Query
POST localhost:9200/testpipeline/_search
{
"fields": [
"personId",
"processingLogId",
"id",
"gender",
"ageAtFirstDOS",
"dateOfBirth"
],
"from": 0,
"query": {
"bool": {
"should": [
{
"constant_score": {
"boost": 200,
"filter": {
"bool": {
"_name": "CriteriaFilterId:2068,CriteriaId:1,CriteriaClassId:1,Points:200,T5:False,SoftScore:200",
"should": [
{
"bool": {
"must": [
{
"nested": {
"path": "labs",
"inner_hits": {
"size": 3,
"name": "labs,CriteriaFilterId:2068,CriteriaId:1,CriteriaClassId:1,Points:200,T5:False,guid:8b41f346-2861-4099-b3c0-fcd6393c367b"
},
"query": {
"bool": {
"must": [
{
"bool": {
"must": [
{
"match_phrase": {
"labs.labPanelSourceName": {
"_name": "CriteriaFilterId:2068,Pipeline.Labs.LabPanelSourceName,es_match_phrase=>'Lipid Panel' found in text",
"query": "Lipid Panel",
"slop": 100
}
}
},
{
"nested": {
"path": "labs.results",
"inner_hits": {
"size": 3,
"name": "labs.results,CriteriaFilterId:2068,CriteriaId:1,CriteriaClassId:1,Points:200,T5:False,guid:3564e83f-958b-4fe8-848e-f9edb5d7f3b2"
},
"query": {
"bool": {
"must": [
{
"bool": {
"should": [
{
"bool": {
"must": [
{
"range": {
"labs.results.resultAsNumber": {
"lte": 46
}
}
},
{
"term": {
"labs.results.labTestNameId": {
"value": 160
}
}
}
]
}
},
{
"bool": {
"must": [
{
"range": {
"labs.results.resultAsNumber": {
"gte": 140.0
}
}
},
{
"term": {
"labs.results.labTestNameId": {
"value": 158
}
}
}
]
}
}
],
"minimum_should_match": 2
}
}
]
}
}
}
}
]
}
}
]
}
}
}
}
]
}
}
]
}
}
}
}
],
"minimum_should_match": 1,
"filter": [
]
}
},
"size": 10,
"sort": [
{
"_score": {
"order": "desc"
}
},
{
"processingLogId": {
"order": "asc"
}
},
{
"personId": {
"order": "asc"
}
}
],
"_source": false
}
I have a problem searching a specific field inside my index.
little background:
On my project we need to search inside a terminology Server like FHIR but then our own.
So we have an object that contains a Code (123564/A), multiple translations as term/display (urine problem) and mapping to other codes that are equal to that code but in a different system (ICD-10, SNOMED-CT, ICPC-2,..) example what has been indexed:
{
"Code": "10008220/A1",
"EffectiveTime": "0001-01-01T00:00:00Z",
"Active": true,
"System": "ibui",
"Purpose": "",
"Descriptions": [
{
"DescriptionId": "2464cf5c-d4fc-4a61-b6bc-746d003cb4ef",
"Code": "10008220/A1",
"System": "ibui",
"Term": "gebroken arm",
"LanguageId": "3d50c237-0add-43e7-92a2-5edf1ac7c6ee",
"FSN": false,
"Preferred": true,
"EffectiveTime": "0001-01-01T00:00:00Z",
"Active": true,
"SendVersion": "2021-12-07T17:01:53.786755Z",
"Purpose": ""
},
{
"DescriptionId": "95501583-9f24-4964-bbc9-1a6e95eba30f",
"Code": "10008220/A1",
"System": "ibui",
"Term": "fracture du bras",
"LanguageId": "1238dde0-08df-4ae0-8676-59919f66737e",
"FSN": false,
"Preferred": true,
"EffectiveTime": "0001-01-01T00:00:00Z",
"Active": true,
"SendVersion": "2021-12-07T17:01:53.786755Z",
"Purpose": ""
}
],
"Mappings": [
{
"MappingId": "",
"FromSys": "ibui",
"From": "10008220/A1",
"ToSys": "icd-10",
"To": "T10",
"EffectiveTime": "0001-01-01T00:00:00Z",
"Active": true
},
{
"MappingId": "",
"FromSys": "ibui",
"From": "10008220/A1",
"ToSys": "icpc-2",
"To": "L76",
"EffectiveTime": "0001-01-01T00:00:00Z",
"Active": true
}
],
"SendVersion": "2021-12-07T17:01:53.786755Z"
}
The problem:
We can search on 2 different fields : Code & Term. and when searching we keep in mind that we have some filters for a specific language code (Dutch,..) or A system like ICD-10 or ICPC-2,..
I have a query that is working and returns the above object when searching in 1 field (Descriptions.Term) that is the following:
working query
{
"query": {
"bool": {
"must": {
"nested": {
"inner_hits": {
"highlight": {
"fields": {
"*": {}
}
}
},
"path": "Descriptions",
"query": {
"bool": {
"should": [
{
"multi_match": {
"fields": [
"Descriptions.Term",
"Descriptions.Term._2gram",
"Descriptions.Term._3gram"
],
"query": "gebroken*~ n",
"type": "bool_prefix"
}
}
],
"filter": [
{
"bool": {
"should": [
{
"term": {
"Descriptions.System": "ibui"
}
},{
"term": {
"Descriptions.System": "icd-10"
}
},{
"term": {
"Descriptions.System": "icpc-2"
}
}
],
"minimum_should_match": "1"
}
},
{
"term": {
"Descriptions.Active": "true"
}
},
{
"term": {
"Descriptions.LanguageId": "3d50c237-0add-43e7-92a2-5edf1ac7c6ee"
}
}
]
}
}
}
}
}
}
}
But when we somethings need to search in multiple fields.
When adding the Descriptions.Code field to the fields map the query is not working and I can't figure out why. I have it decleared inside my mapping so it should be searchable?
I'm searching for the Code of the object above in both fields (Descriptions.Term & Descriptions.Code) but it doesn't returns the hit.
not working query
{
"query": {
"bool": {
"must": {
"nested": {
"inner_hits": {
"highlight": {
"fields": {
"*": {}
}
}
},
"path": "Descriptions",
"query": {
"bool": {
"should": [
{
"multi_match": {
"fields": [
"Descriptions.Term",
"Descriptions.Term._2gram",
"Descriptions.Term._3gram",
"Descriptions.Code"
],
"query": "10008220*~ n",
"type": "bool_prefix"
}
}
],
"filter": [
{
"bool": {
"should": [
{
"term": {
"Descriptions.System": "ibui"
}
},{
"term": {
"Descriptions.System": "icd-10"
}
},{
"term": {
"Descriptions.System": "icpc-2"
}
}
],
"minimum_should_match": "1"
}
},
{
"term": {
"Descriptions.Active": "true"
}
},
{
"term": {
"Descriptions.LanguageId": "3d50c237-0add-43e7-92a2-5edf1ac7c6ee"
}
}
]
}
}
}
}
}
}
}
mapping:
{
"settings": {
"number_of_shards": 1,
"analysis": {
"analyzer": {
"autocomplete": {
"tokenizer": "custom_tokenizer"
}
},
"tokenizer": {
"custom_tokenizer": {
"type": "ngram",
"min_gram": 2,
"max_gram": 6,
"token_chars": [
"letter",
"digit",
"symbol",
"punctuation"
]
}
}
},
"max_ngram_diff" : "5"
},
"mappings": {
"properties": {
"Descriptions": {
"type": "nested",
"properties": {
"Term": {
"type": "search_as_you_type",
"analyzer": "autocomplete"
},
"Code": {
"type": "keyword",
"index": true
},
"System": {
"type": "keyword",
"index": true
},
"LanguageId": {
"type": "keyword",
"index": true
},
"Purpose": {
"type": "keyword",
"index": true
},
"Active": {
"type": "keyword",
"index": true
}
}
},
"Mappings": {
"properties": {
"To": {
"type": "keyword",
"index": true
},
"ToSys": {
"type": "keyword",
"index": true
}
}
}
}
}
}
Thank you for helping me out!
I'm taking an old project to maintain and I am stuck since a day on a query.
The elasticsearch version I use is 1.7 but I don't think this is relevant to my problem.
I have some teacher documents :
{
"id": 244,
"degree": [],
"teacherDiplomaRelation": [],
"user": {
"enabled": true
},
"teacherClassDisciplineRelation": [
SEE BELOW
}
The teacherClassDisciplineRelation is N times this format (for every couple levelTree/Discipline that I have)
{
"levelTree": {
"id": 34,
"label": "1st year of college",
"slugLastLevelDisplay": "college"
},
"discipline": {
"id": 1,
"label": "Maths",
"slug": "maths"
},
"cityLocation": "10.1010,10.1010"
}
Now i want to get all teacher enabled and having maths in their disciplines. my query is:
{
"query": {
"filtered": {
"filter": {
"bool": {
"must": [
{
"term": {
"user.enabled": true
}
},
{
"term": {
"teacherClassDisciplineRelation.discipline.slug": "maths"
}
}
]
}
}
}
},
"size": {
"from": 0,
"size": 15
}
}
Mapping:
"teacherClassDisciplineRelation": {
"type": "nested",
"properties": {
"cityLocation": {
"type": "geo_point",
"store": true
},
"discipline": {
"properties": {
"id": {
"type": "string",
"store": true
},
"label": {
"type": "string",
"boost": 7.0,
"store": true,
"analyzer": "custom_analyzer"
},
"slug": {
"type": "string",
"boost": 7.0,
"index": "not_analyzed",
"store": true,
"norms": {
"enabled": true
}
}
}
}
Problem:
My query with "user.enabled": true give me some results,
My query with "teacherClassDisciplineRelation.discipline.slug": "maths" always gives me 0 result but I've checked in the index, I should have some results.
I'm new to elasticsearch but I can't find out why my result is always 0.
Any idea why?
Since teacherClassDisciplineRelation is a nested field. You have to use Nested Query.
{
"query": {
"bool": {
"must": [
{
"nested": {
"path": "teacherClassDisciplineRelation",
"query": {
"term": {
"teacherClassDisciplineRelation.discipline.slug": {
"value": "maths"
}
}
}
}
},
{
"term": {
"user.enabled": true
}
}
]
}
}
}
Hope this helps!!
I have documents which look like this (here is example):
{
"user": "xyz",
"state": "FINISHED",
"finishedTime": 1465566467161,
"jobCounters": {
"counterGroup": [
{
"counterGroupName": "org.apache.hadoop.mapreduce.FileSystemCounter",
"counter": [
{
"name": "FILE_BYTES_READ",
"mapCounterValue": 206509212380,
"totalCounterValue": 423273933523,
"reduceCounterValue": 216764721143
},
{
"name": "FILE_BYTES_WRITTEN",
"mapCounterValue": 442799895522,
"totalCounterValue": 659742824735,
"reduceCounterValue": 216942929213
},
{
"name": "HDFS_BYTES_READ",
"mapCounterValue": 207913352565,
"totalCounterValue": 207913352565,
"reduceCounterValue": 0
},
{
"name": "HDFS_BYTES_WRITTEN",
"mapCounterValue": 0,
"totalCounterValue": 89846725044,
"reduceCounterValue": 89846725044
}
]
},
{
"counterGroupName": "org.apache.hadoop.mapreduce.JobCounter",
"counter": [
{
"name": "TOTAL_LAUNCHED_MAPS",
"mapCounterValue": 0,
"totalCounterValue": 13394,
"reduceCounterValue": 0
},
{
"name": "TOTAL_LAUNCHED_REDUCES",
"mapCounterValue": 0,
"totalCounterValue": 720,
"reduceCounterValue": 0
}
]
}
]
}
}
Now I want to sort this data to get TOP 15 documents on the basis of totalCounterValue where counter.name is FILE_BYTES_READ. I have tried nested sorting on this but no matter which key name I write in counter.name, it is always sorting on the basis of HDFS_BYTES_READ. Can anyone please help me with my query.
{
"_source": true,
"size": 15,
"query": {
"bool": {
"must": [
{
"term": {
"state": {
"value": "FINISHED"
}
}
},
{
"range": {
"startedTime": {
"gte": "now - 4d",
"lte": "now"
}
}
}
]
}
},
"sort": [
{
"jobCounters.counterGroup.counter.totalCounterValue": {
"order": "desc",
"nested_path": "jobCounters.counterGroup",
"nested_filter": {
"nested": {
"path": "jobCounters.counterGroup.counter",
"filter": {
"term": {
"jobCounters.counterGroup.counter.name": "file_bytes_read"
}
}
}
}
}
}
]}
This is the mapping for jobCounters we have created:
"jobCounters": {
"type": "nested",
"include_in_parent": true,
"properties" : {
"counterGroup": {
"type": "nested",
"include_in_parent": true,
"properties": {
"counterGroupName": {
"type": "string",
"fields": {
"raw": {
"type": "string",
"index": "not_analyzed"
}
}
},
"counter" : {
"type": "nested",
"include_in_parent": true,
"properties": {
"reduceCounterValue": {
"type": "long"
},
"name": {
"type": "string",
"analyzer": "english",
"fields": {
"raw": {
"type": "string",
"index": "not_analyzed"
}
}
},
"totalCounterValue": {
"type": "long"
},
"mapCounterValue": {
"type": "long"
}
}
}
}
}
}
}
I followed nested sorting documentation of ElasticSearch and came up with this query, but I don't know why it is always sorting the totalCounterValue of HDFS_BYTES_READ irrespective of jobCounters.counterGroup.counter.name's value.
you can try something like this,
curl -XGET 'http://localhost:9200/index/jobCounters/_search' -d '
{
"size": 15,
"query": {
"nested": {
"path": "jobCounters.counterGroup.counter",
"filter": {
"term": {
"jobCounters.counterGroup.counter.name": "file_bytes_read"
}
}
}
},
"sort": [
{
"jobCounters.counterGroup.counter.totalCounterValue": {
"order": "desc",
"nested_path": "jobCounters.counterGroup",
"nested_filter": {
"nested": {
"path": "jobCounters.counterGroup.counter",
"filter": {
"term": {
"jobCounters.counterGroup.counter.name": "file_bytes_read"
}
}
}
}
}
}
]
}
'
Read the end of this document. It explains that we have to repeat the same query in nested_filter too.
How to add additional filter to match category values in blog.post.notes all fields? First I want to filter by ids, then filter notes category, is it possible?
I can filter only by ids:
GET posts/posts/_search?fields=_id&_source=blog.post.notes
{
"query": {
"filtered": {
"query": {
"match_all": {}
},
"filter": {
"ids": {
"values": [
"100000000001234"
]
}
}
}
}
}
How to filter e.g. "test" category from current results:
{
"took": 58,
"timed_out": false,
"_shards": {
"total": 5,
"successful": 5,
"failed": 0
},
"hits": {
"total": 1,
"max_score": 1,
"hits": [{
"_index": "posts",
"_type": "posts",
"_id": "100000000001234",
"_score": 1,
"_source": {
"blog": {
"post": {
"notes": {
"main": [{
"message": "blablabla",
"category": "test"
}, {
"message": "blablabla",
"category": "other"
}],
"cart": [{
"message": "blablabla",
"category": "test"
}, {
"message": "blablabla",
"category": "other"
}]
}
}
}
}
}]
}
}
curl -XGET localhost:9200/posts/_mapping/posts
{
"posts": {
"mappings": {
"posts": {
"dynamic_templates": [{
"blog": {
"mapping": {
"index": "analyzed"
},
"path_match": "blog.*",
"path_unmatch": "*.medias.*"
}
}, {
"ids": {
"mapping": {
"index": "not_analyzed",
"type": "string"
},
"match": "_id|base_id",
"match_pattern": "regex"
}
}],
"_all": {
"enabled": false
},
"properties": {
"query": {
"properties": {
"filtered": {
"properties": {
"filter": {
"properties": {
"ids": {
"properties": {
"values": {
"type": "string"
}
}
}
}
},
"query": {
"properties": {
"match_all": {
"type": "object"
}
}
}
}
},
"match_all": {
"type": "object"
}
}
},
"source": {
"dynamic": "true",
"properties": {
"post": {
"dynamic": "true",
"properties": {
"_id": {
"type": "string",
"index": "not_analyzed"
},
"base_id": {
"type": "string",
"index": "not_analyzed"
}
}
}
}
},
"blog": {
"properties": {
"post": {
"properties": {
"_id": {
"type": "string"
},
"notes": {
"properties": {
"main": {
"properties": {
"id": {
"type": "string"
},
"message": {
"type": "string"
},
"category": {
"type": "string"
}
}
},
"cart": {
"properties": {
"id": {
"type": "string"
},
"message": {
"type": "string"
},
"category": {
"type": "string"
}
}
}
}
}
}
}
}
}
}
}
}
}
}
You can use bool query with must on ids and terms
POST c1_2/Test/_search
{
"query": {
"bool": {
"must": [
{
"ids": {
"values": [
1,
2,
3
]
}
},
{
"terms": {
"blog.post.notes.main.category": [
"categoryfilter"
]
}
}
]
}
}
}
But since you have main and cart categories you must use filter on each of them, in my example i filter on main categories, if you need to do filter on both you need to use one more or filter which will filter on main or cart categories
Also you should know that category should be not_analyzed in order to filter on something like "my super category" other wise query will not be working properly.
Example
POST c1_2/Blog/1
{
"post": {
"notes": {
"main": [
{
"message": "blablabla",
"category": "test"
},
{
"message": "blablabla",
"category": "other"
}
],
"cart": [
{
"message": "blablabla",
"category": "test"
},
{
"message": "blablabla",
"category": "other"
}
]
}
}
}
POST c1_2/Blog/2
{
"post": {
"notes": {
"main": [
{
"message": "blablabla",
"category": "second"
},
{
"message": "blablabla",
"category": "third"
}
],
"cart": [
{
"message": "blablabla",
"category": "test"
},
{
"message": "blablabla",
"category": "other"
}
]
}
}
}
POST c1_2/Blog/_search
{
"query": {
"bool": {
"must": [
{
"ids": {
"values": [
1,
2,
3
]
}
},
{
"terms": {
"post.notes.main.category": [
"test"
]
}
}
]
}
}
}