I just installed the linter-ruby package on atom and restarted the editor, but it doesn't detect any errors on my ruby files nor does it highlight the corresponding "end" to the "def"s. Is there something I'm missing? I have linter 1.11.21 and linter-ruby 1.2.4 installed. Below is a pic of all my packages install -
To get Linter to work for me (windows 7) with atom and ruby I installed these packages: Busy-signal, intentions, linter, linter-ui-default (these 4 by steelbrain), & linter-ruby (AtomLinter)
Hope this helps!
Related
I'm trying to install the package "Tax4Fun" but keep failing.
I've tried 2 different ways:
install.packages("devtools")
devtools::install_url("http://tax4fun.gobics.de/Tax4Fun/Tax4Fun_0.3.1.tar.gz")
library(Tax4Fun)
The error that I get is:
ERROR: dependency 'biom' is not available for package 'Tax4Fun'
I've also tried installing biom directly
BiocManager::install("biom")
which does not work either
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
Installing package(s) 'biom'
Installation path not writeable, unable to update packages: boot, foreign, KernSmooth,
mgcv, nlme, survival
Warning message:
package ‘biom’ is not available (for R version 3.6.1)
The other way I've tried to install Tax4Fun directly is
BiocManager::install("Tax4Fun")
I get the following error code:
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
Installing package(s) 'Tax4Fun'
Installation path not writeable, unable to update packages: boot, foreign, KernSmooth,
mgcv, nlme, survival
Warning message:
package ‘Tax4Fun’ is not available (for R version 3.6.1)
Please help :)
You need to install it by downloading the packages from source (http://tax4fun.gobics.de). Then it depends whether you are running on Linux/Mac or Windows.
From the command line, you navigate to the folder containing the .tar.gz downloaded package. Then you should install it using:
R CMD INSTALL Tax4Fun_0.3.1.tar.gz
But dependancies are not installed by default. So you need to install dependancies manually, Qiimer and Biom, which are both deprecated on Cran. You install them using the same command, after you have downloaded the packages from the Cran archives.
Before that, you need to also install their dependancies in R:
install.packages("pheatmap")
install.packages("RJSONIO")
Then you should be able to proceed as mentioned above: install Qiimer and Biom from the command line first. Then Tax4Fun from the command line too.
If you are running on Windows you should have quite the same issues, but the installation of the different packages and dependancies is different. You can have a look at the readme at http://tax4fun.gobics.de
First of all, I know a lot of questions similar to mine have been asked, and nevertheless they don't help me solve the problem I'm facing. I'm running Octave 5.1.0.0 on Windows 10 Pro 64 bit. I'm having no issues but one: when I try to install Symbolic package by pkg install symbolic-2.7.1.tar.gz (downloaded from Octave Forge), I get the error
unpack: unarchiving program exited with status: 1
tar: Error opening archive: Failed to open
'/C/Users/smlvcfncst/Downloads/symbolic-2.7.1.tar.gz'
error: called from
unpack at line 274 column 5
untar at line 48 column 5
install at line 81 column 9
pkg at line 441 column 9
and I have no clue where the problem related to the unpacking could be. Not only I have 7z and Winrar installed, but moreover I use a full installation of Cmder, so my system has everything that is needed to work with a .tar.gz
I've tried in different terminals, both with and without administrator privileges, and the problem persists. How should I proceed then?
EDIT: Following Andy's suggestion, I let you know that even before installing Octave I already have installed and used both Python and MinGW, as well as sympy module. Moreover, my Octave installation was the most standard possible for Windows, that is using the official .exe installer. No other package, apart from those included with installation, have been added before I tried adding symbolic.
Thank you in advance.
476/5000
rstudio generates error when running R code with python code. At first the code worked very well but in the second installation it started to generate faults. Here is the link of the code in case you want to play #https: //www.r-bloggers.com/r-and-python-using-reticulate-to-get-the-best-of-both-worlds/
. My laptop is hp 4 gigs of ram and 500 mb of hard disk.
I would greatly appreciate who can explain the failure and how to solve it.
I have reinstalled anaconda last version twice.
library(reticulate)
use_python("/usr/local/bin/python")
use_virtualenv("r-reticulate")
os <- import("os")
Error: lexical error: invalid char in json text.
WARNING: The conda.compat modul
(right here) ------^
os$listdir(".")
Error: object 'os' not found
py_config()
Error: lexical error: invalid char in json text.
WARNING: The conda.compat modul
(right here) ------^
Actually, it comes from a deprecation warning reported a few days ago (fix compat import showing warning #8507).
But the fact is that this warning in "conda.compat" generates some errors, for example in the case of using conda environments in R through "reticulate" functions. This issue has been reported quite recently Conda warnings taken as errors #477.
The solution is to simply install the github version of "reticulate" in order to avoid these errors and ignore the conda warnings which shouldn't necessarily impede these functionalities. You can do it like this way:
remotes::install_github("rstudio/reticulate")
And don't forget to have the latest Rtools installed in your operating system!
This might be useful for you: https://docs.anaconda.com/anaconda/user-guide/tasks/switch-environment/
I have Anaconda, and set up Python 2 environment. Once activated, run 'use_python' with the path to that environment and set the 'required' parameter to TRUE.
I had the same problem. I solved the problem by installing an older version of conda.
In anaconda promt
conda install conda = 4.1.6
I can't use cabal with the latest Haskell Platform (2014.2.0.0). I've tried uninstalling, removing all folders from PATH and deleting cabal's library directory, and still no luck
When I run cabal from the command line in the GitBash MINGW32 shell I get the following error:
cabal.exe init
cabal.exe: The program ghc version =6.4 is required but it could not be
found.
(cabal configure, cabal install, etc. all give the same error, except cabal --version)
Now, when I execute cabal from the windows cmd, it runs fine, but when I try to do a cabal init, I get the following:
>cabal init
Package name? [default: toyrsa]
Package version? [default: 0.1.0.0]
Please choose a license:
* 1) (none)
2) GPL-2
3) GPL-3
4) LGPL-2.1
5) LGPL-3
6) AGPL-3
7) BSD3
8) MIT
9) Apache-2.0
10) PublicDomain
11) AllRightsReserved
12) Other (specify)
Your choice? [default: (none)] 3
cabal: git: does not exist
Choosing the default or other options produces the same result. Upgrading to Cabal 1.20 does not help either.
This bug was documented here: https://github.com/haskell/cabal/issues/1613 and that issue claims that it was fixed in the 1.20 series. If you're using 1.20 and still running into it (and sure you're running 1.20 and not an older binary on your path) then you definitely should report it there and reopen the ticket.
Running cabal init from the cmd can be made to work by adding git to the PATH variable. The error at step 3 disappears then. Still seems pretty weird that I need git to create a configuration file for an empty local project with no dependencies.
I'm using RStudio and have been trying to use the rPython package to do some email handling for me. This involves unpacking some email attachments so I need to use a newer version of Python than 2.7.
I am on ubuntu so I've set environment variables in a bash script which I can see has worked:
bash
alias python=python3
export RPYTHON_PYTHON_VERSION=3
command line
echo $RPYTHON_PYTHON_VERSION
3
And yet, when I install rPython in RStudio it says:
Installing package into ‘/home/richardc/R/x86_64-pc-linux-gnu-library/3.1’
(as ‘lib’ is unspecified)
trying URL 'http://cran.rstudio.com/src/contrib/rPython_0.0-5.tar.gz'
Content type 'application/x-gzip' length 37109 bytes (36 Kb)
opened URL
downloaded 36 Kb
installing source package ‘rPython’ ...
** package ‘rPython’ successfully unpacked and MD5 sums checked
a specific python version to use was not provided
defaulting to the standard python in the system
So, despite python --version returning 3.4 and setting the environment variable it is defaulting to 2.7
I'm hoping that there is something straightforward I'm missing.
#nickbloom was actually close to it, but it is not Sys.setenv(RPYTHON_PYTHON_PATH=3) but Sys.setenv(RPYTHON_PYTHON_VERSION=3)
In my case (I have Python 3.5) it was:
> Sys.setenv(RPYTHON_PYTHON_VERSION=3.5)
> install.packages('rPython')
Installing package into ‘/usr/lib64/R/library’ (as ‘lib’ is unspecified) trying URL
'http://r.meteo.uni.wroc.pl/src/contrib/rPython_0.0-5.tar.gz' Content
type 'application/x-gzip' length 37109 bytes (36 KB)
================================================== downloaded 36 KB
* installing *source* package ‘rPython’ ...
** package ‘rPython’ successfully unpacked and MD5 sums checked which: no python3.5-config in (/sbin:/bin:/usr/sbin:/usr/bin) could not
locate python3.5-config
As you can see now it is looking for python3.5-config, which is the version I specified above.
Also if your python3.5-config file is not in the PATH then you might also want to set the PATH:
Sys.setenv(PATH='/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/bin')
You might also need to rename python3.5m-config, because rPython always looks for [pythoncommand]-config, which in my case was python3.5 and not python3.5m, so I just renamed python3.5m-config to python3.5-config and then the rPython package has installed.
I know this is way late, but I believe you have to set the R environment variable, not the bash environment variable. Set it like this: Sys.setenv(RPYTHON_PYTHON_PATH=3)
HTH.
EDIT: Nope, that's not it. I'm stumped, too.
In my case, none of the provided answers worked. I suspect it's because I installed python3 through homebrew (I'm on Mac OSX).
However, this worked:
I edited the configure.ac file in the downloaded package and then installed it through R CMD INSTALL.
MYPYTHONCONFIG=python3-config
MYPYTHON=python3