I'm on a Mac, and I want to find a field in a CSV file adjacent to a search string
This is going to be a single file with a hard path; here's a sample of it:
84:a5:7e:6c:a6:b0, AP-ATC-151g84
84:a5:7e:6c:a6:b1, AP-A88-131g84
84:a5:7e:73:10:32, AP-AG7-133g56
84:a5:7e:73:10:30, AP-ADC-152g81
84:a5:7e:73:10:31, AP-D78-152e80
so if my search string is "84:a5:7e:73:10:32"
I want to get returned "AP-AG7-133g56"
I had been working within an Applescript, but maybe a shell script will do.
I just need the proper syntax for opening the file and having awk search it. Again, I'm weak conceptually on how shell commands run, how they must be executed, etc
This errors, gives me ("command not found"):
set the_file to "/Users/Paw/Desktop/AP-Decoder 3.app/Contents/Resources/BSSIDtable.csv"
set the_val to "70:56:81:cb:a2:dc"
do shell script "'awk $1 ~ the_val {print $2} the_file'"
Thank you for coddling me...
This is a relatively simple:
awk '$1 == "70:56:81:cb:a2:dc," {print "The answer is "$2}' 'BSSIDtable.csv'
(the "The answer is " text can be omitted if you only wish to see only the data, but this shows you how to get more user-friendly output if desired).
The comma is included since awk uses white space for separators so the comma becomes part of column 1.
If the thing you're looking for is in a shell variable, you can use -v to provide that to awk as an awk variable:
lookfor="70:56:81:cb:a2:dc,"
awk -v mac=$lookfor '$1 == mac {print "The answer is "$2}' 'BSSIDtable.csv'
As an aside, your AppleScript solution is probably not working because the $1/$2 are being interpreted as shell variable rather than awk variables. If you insist on using AppleScript, you will have to figure out how to construct a shell command that quotes the awk commands correctly.
My advice is to just use the shell directly, the number of people proficient in that almost certainly far outnumber those proficient in AppleScript :-)
if sed is available (normaly on mac, event if not tagged in OP)
simple but read all the file
sed -n 's/84:a5:7e:73:10:32,[[:blank:]]*//p' YourFile
quit after first occurence (so average of 50% faster on huge file)
sed -n -e '/84:a5:7e:73:10:32,[[:blank:]]*/!b' -e 's///p;q' YourFile
awk
awk '/^84:a5:7e:73:10:32/ {print $2}'
# OR using a variable for batch interaction
awk -v Src='84:a5:7e:73:10:32' '$1 == Src {print $2}'
# OR assuming that case is unknow
awk -v Src='84:a5:7e:73:10:32' 'BEGIN{IGNORECASE=1} $1 == Src {print $2}'
by default it take $0 as compare test if a regex is present, just add the ^ to take first field content
Related
I would like to write a loop creating various output files with the first column of each input file, respectively.
So I wrote
for i in $(\ls -d /home/*paired.isoforms.results)
do
awk -F"\t" {print $1}' $i > $i.transcript_ids.txt
done
As an example if there were 5 files in the home directory named
A_paired.isoforms.results
B_paired.isoforms.results
C_paired.isoforms.results
D_paired.isoforms.results
E_paired.isoforms.results
I would like to print the first column of each of these files into a seperate output file, i.e. I would like to have 5 output files called
A.transcript_ids.txt
B.transcript_ids.txt
C.transcript_ids.txt
D.transcript_ids.txt
E.transcript_ids.txt
or any other name as long as it is 5 different names and I can still link them back to the original files.
I understand, that there is a problem with the double usage of $ in both the awk and the loop command, but I don't know how to change that.
Is it possible to write a command like this in a loop?
This should do the job:
for file in /home/*paired.isoforms.results
do
base=${file##*/}
base=${base%%_*}
awk -F"\t" '{print $1}' $file > $base.transcript_ids.txt
done
I assume that there can be spaces in the first field since you set the delimiter explicitly to tab. This runs awk once per file. There are ways to do it running awk once for all files, but I'm not convinced the benefit is significant. You could consider using cut instead of awk '{print $1}', too. Note that using ls as you did is less satisfactory than using globbing directly; it runs foul of file names with oddball characters (spaces, tabs, etc) in the name.
You can do that entirely in awk:
awk -F"\t" '{split(FILENAME,a,"_"); out=a[1]".transcript_ids.txt"; print $1 > out}' *_paired.isoforms.results
If your input files don't have names as indicated in the question, you'd have to split on something else ( as well as use a different pattern match for the input files ).
My original answer is actually doing extra name resolution every time something is printed. Here's a version that only updates the output filename when FILENAME changes:
awk -F"\t" 'FILENAME!=lf{split(FILENAME,a,"_"); out=a[1]".transcript_ids.txt"; lf=FILENAME} {print $1 > out}' *_paired.isoforms.results
I have those lines in my text file :
msg_wdraw[] = "whatever a sentence here,"
"This is the second part of this text1 ."
msg_sp2million[] = "whatever a sentence here,"
"This is the second part of this text2."
I need the sentence between msg_sp2million and the period "." and print them out.
i.e ("whatever a sentence here,"
"This is the second part of this text2.")
I tried this : sed -n "/msg_sp2million/,/./p" filename.txt
However, this sed command also returns me the value of msg_wdraw (the first variable)
I also tried awk, grep, other sed..... but failed eventually.
How can I fix this problem ? And Why this returns me not only the value of msg_sp2million and also the value of msg_wdraw ?
Please help # ~ #
Maybe something like this:
awk '/msg_sp2million/{ split($0,a,"="); print a[length(a)]; getline; print}' file.txt
Match regexp, print what comes after the =, get next line, and print that too.
Returns:
"whatever a sentence here,"
"This is the second part of this text2."
Using simple awk command:
awk -F '= *' -v RS='.' -v ORS='."\n' '$1 ~ /msg_sp2million/ {sub(/" *\n */, "\" ", $2);
print $2}' file
"whatever a sentence here," "This is the second part of this text2."
I'm unable to add my solution (a POSIX-compliant derivative of qwwqwwq's solution, referred as qww below) as a comment. So, qww's solution works, but ONLY in GNU awk from a certain version onward (apparently 3.1.5, see also http://awk.freeshell.org/AwkFeatureComparison).
Tip: Try
awk -W posix '/msg_sp2million/{ split($0,a,"="); print a[length(a)]; getline; print}' file.txt
in a non-GNU environment and you will 99% sure get an error message, e. g. about using an array in a scalar context.
The following solution should also work on a HP-UX workstation:
(well, the -W posix may be omitted of course, but is always invaluable while in testing stage)
awk -W posix '/msg_sp2million/{ amount=split($0,a,"="); print a[amount]; getline; print}' file.txt
I have two questions. The first is that sometimes when I am coding in Unix and I input a command and I do it wrong I get a new line without my prompt and no matter what I type, nothing happens until I exit out and re-enter. Does anyone know why this is happening?
Secondly,
I have a file that consists of: filename space data
I need to get the data, I heard that I should use awk or sed but I am not sure how to do it. Any help is welcome.
Dennis has already answered your first question well. (Note: please put only one question in at a time!)
For your second question, it can be done much more simply.
awk '{ print $2 }' yourfile
By default, awk uses space as its column delimiter, so this simply tells awk to print out the second column. If you want the output sent to a new file, then just do this:
awk '{ print $2 }' yourfile > newfile
First question:
Enter echo " and it will happen. Unix supports multi-line commands.
Example:
echo "
is a multi-line
command"
Type in " and enter to terminate.
Second question:
Here's a link to a nice AWK tutorial: Awk - A Tutorial and Introduction
Basicaly, you use
awk '{ print "echo " $2 }' filename | sh
for example, to echo all the data.
$2 accesses the second chunk of information of each line (chunks are seperates by spaces).
print "echo " $2 will cause awk to output echo data.
Last, you pipe to sh to execute the command of awk's output.
I have a shell script that constructs an awk program as a string then pass that string to awk. This is because I want to use values of shell variables in the awk program.
My code looks like this:
awk_prog="'{if (\$4~/$shell_var/) print \$1,\$2}'"
echo $awk_prog
awk $awk_prog $FILENAME
However, when I pass the string to awk, I always get the error:
'{if ($4~/regex/) print $1,$2}'
awk: '{if
awk: ^ invalid char ''' in expression
What does that error message mean? I tried the -F: switch but it does not help. How can I settle this issue?
Thank you.
This is caused by shell quoting. The following will work:
awk_prog="{ if (\$4 ~ /$shell_var/) print \$1, \$2 }"
echo "$awk_prog"
awk "$awk_prog" $FILENAME
When you run awk '{ print }' foo from the command line, the shell interprets and removes the quotes around the program so awk receives two arguments - the first is the program text and the second is the filename foo. Your example was sending awk the program text '{if ...}' which is invalid syntax as far as awk is concerned. The outer quotes should not be present.
In the snippet that I gave above, the shell uses the quotes in the awk_prog= line to group the contents of the string into a single value and then assigns it to the variable awk_prog. When it executes the awk "$awk_prog"... line, you have to quote the expansion of $awk_prog so awk receives the program text as a single argument.
There's another way to get your shell variable into awk -- use awk's -v option:
awk -v pattern="$shell_var" '$4 ~ pattern {print $1, $2}' "$FILENAME"
Use -v multiple times if you have several variables to pass to awk.
If you truly want to hold your awk program in a shell variable, build it up using printf:
awk_script="$( printf '$4 ~ /%s/ {print $1, $2}' "$shell_var" )"
awk "$awk_script" "$FILENAME"
Note the use of quotes in the printf command: single quotes around the template to protect the dollar signs you want awk to interpret, double quotes for shell variables.
Another (IMO simpler) solution which (I think) addresses what you are intuitively trying to do is simply to use eval. You want the shell to behave as if you had literally typed:
awk '{if ($4~/foo/) print $1,$2}' path
(where foo and path are the literal contents of $shell_var and $FILENAME). To make that happen, just slap an eval on the front of your last line (and perhaps quotes for good measure, but they aren't necessary in this case) so that your last line is:
eval "awk $awk_prog $FILENAME"
I have a file with fields separated by pipe characters and I want to print only the second field. This attempt fails:
$ cat file | awk -F| '{print $2}'
awk: syntax error near line 1
awk: bailing out near line 1
bash: {print $2}: command not found
Is there a way to do this?
Or just use one command:
cut -d '|' -f FIELDNUMBER
The key point here is that the pipe character (|) must be escaped to the shell. Use "\|" or "'|'" to protect it from shell interpertation and allow it to be passed to awk on the command line.
Reading the comments I see that the original poster presents a simplified version of the original problem which involved filtering file before selecting and printing the fields. A pass through grep was used and the result piped into awk for field selection. That accounts for the wholly unnecessary cat file that appears in the question (it replaces the grep <pattern> file).
Fine, that will work. However, awk is largely a pattern matching tool on its own, and can be trusted to find and work on the matching lines without needing to invoke grep. Use something like:
awk -F\| '/<pattern>/{print $2;}{next;}' file
The /<pattern>/ bit tells awk to perform the action that follows on lines that match <pattern>.
The lost-looking {next;} is a default action skipping to the next line in the input. It does not seem to be necessary, but I have this habit from long ago...
The pipe character needs to be escaped so that the shell doesn't interpret it. A simple solution:
$ awk -F\| '{print $2}' file
Another choice would be to quote the character:
$ awk -F'|' '{print $2}' file
Another way using awk
awk 'BEGIN { FS = "|" } ; { print $2 }'
And 'file' contains no pipe symbols, so it prints nothing. You should either use 'cat file' or simply list the file after the awk program.