I have a gradle task which runs a bash script which in turn cleans up some docker containers, it's part of a pipeline of tasks.
If I run this task from the command line, it works fine; if I run it from within IntelliJ IDEA, it fails because I cannot find the docker command.
This is the task:
task localDockerClean(type: Exec) {
executable './cleanDocker.sh'
ignoreExitValue true
}
This is the script:
#! /bin/bash
echo "Init - Clean Docker Containers"
docker stop $(docker ps -a -q)
docker rm $(docker ps -a -q)
docker system prune --force --volumes
echo "End - Clean Docker Containers"
And this is the output that only happens when run from IntelliJ IDEA:
> Task :scripts:migrations:localDockerClean
Init - Clean Docker Containers
./cleanDocker.sh: line 4: docker: command not found
./cleanDocker.sh: line 4: docker: command not found
./cleanDocker.sh: line 5: docker: command not found
./cleanDocker.sh: line 5: docker: command not found
./cleanDocker.sh: line 6: docker: command not found
End - Clean Docker Containers
Looks like the script has no access to the docker command which is in the PATH in my MacOS but only when run from the IDE, otherwise it works fine.
Any idea how to fix this issue in my IDE?
Thank you!
I have a file .mqsc with a commands for create queues(ibm mq).
How to run a script by kubectl?
kubectl exec -n test -it mq-0 -- /bin/bash -f create_queues.mqsc doesn't work.
log:
/bin/bash: create_queues.mqsc: No such file or directory command terminated with exit code 127
Most probably your script is not under the "/" directory in docker. You need to find whole path after that you need to execute script
I have bash script that performing some Docker commands:
#!/usr/bin/env bash
echo "Create and start database"
cd ../../database
cp -R ../../../scripts/db db/
docker build -t a_database:1 .
docker run --rm --name a_db -e POSTGRES_PASSWORD=docker -d -p 5432:5432 a_database:1
docker network connect --ip 172.23.0.5 a_network a_db
sleep 15
echo "Initialize database"
docker exec a_db /root/db/dev/init_db.sh
echo "Cleanup"
rm -rf db
On mac everything works fine, problem occurs when I try to start this script on windows machine. When I'm running it I receive an error:
OCI runtime exec failed: exec failed: container_linux.go:344: starting container process caused "exec: \"C:/Program Files/Git/root/db/dev/init_db.sh\": stat C:/Program Files/Git/root/db/dev/init_db.sh: no such file or directory": unknown
Directory and script (/root/db/dev/init_db.sh) exist inside docker container. I don't know why it tries to find script on host machine? Also when I perform command:
docker exec a_db /root/db/dev/init_db.sh
directly in command line (on windows) script is executed. Any idea what is wrong and why it's trying to use git ?
I had a similar problem... absolute paths with windows variables fixed mine:
$HOME/docker/...
Thanks to igaul answer I was able to run this on windows machine. There were two problems:
Path to script in docker container. Instead of:
docker exec a_db /root/db/dev/init_db.sh
should be:
docker exec a_db root/db/dev/init_db.sh
Line endings in init_db.sh. On windows machine after pulling repository from bitbucket line ending of init_db.sh was setup to CRLF what caused problem. I've added .gitattribute file to my repo and now init_db.sh file always has LF endings.
It's not a bug in Docker, but the way mingw handles these paths. Here is some more information about that "feature"; http://www.mingw.org/wiki/Posix_path_conversion. Prefixing the path with a double slash (//bin/bash) should prevent this, or you can set MSYS_NO_PATHCONV=1, see How to stop MinGW and MSYS from mangling path names given at the command line
Input:
- There is Windows machine with Docker Toolbox installed.
- There is a shell script file baz.sh which calls py2dsc-deb.
Problem: py2dsc-deb is not available on Windows.
As I understand correctly, I can pull some Linux distro image from Docker repository, create a container and then execute shell-script file and it will run py2dsc-deb and do its job.
I have pulled:
debian - stretch-slim - 3ad21 - 3 weeks ago - 55.3MB
Now
How do I run my script using debian, something like: docker exec mycontainer /path/to/test.sh?
Running docker --rm debian:stretch-slim does nothing. Doesn't it suppose to run Debian distro at docker-machine ip?
I have tried to keep the container up using docker run -it debian:stretch-slim /bin/bash, then run the script using docker exec 1ef5b ./build.sh, but getting
$ docker exec 745 ./build.sh
rpc error: code = 2 desc = oci runtime error: exec failed: container_linux.go:247: starting container process caused "exec: \"./build.sh\": stat ./build.sh: no such file or directory"
Does it mean I can't run external script and has to always pass it inside the Docker?
You can execute bash command inside your container by typing
docker exec -ti -u `username` `container_name` bash -c "cd /path/to/ && ./test.sh"
lets say your container name is test_buildbox, you are root and your script stays inside /bin/test.sh You can call this script by typing
docker exec -ti -u root test_buildbox bash -c "cd /bin/ && ./test.sh
Please check if you have correct line endings in your .sh scripts (<LF>) when you built Docker image on Windows.
I'm trying to build a new Docker image for our development process, using cpanm to install a bunch of Perl modules as a base image for various projects.
While developing the Dockerfile, cpanm returns a failure code because some of the modules did not install cleanly.
I'm fairly sure I need to get apt to install some more things.
Where can I find the /.cpanm/work directory quoted in the output, in order to inspect the logs? In the general case, how can I inspect the file system of a failed docker build command?
After running a find I discovered
/var/lib/docker/aufs/diff/3afa404e[...]/.cpanm
Is this reliable, or am I better off building a "bare" container and running stuff manually until I have all the things I need?
Everytime docker successfully executes a RUN command from a Dockerfile, a new layer in the image filesystem is committed. Conveniently you can use those layers ids as images to start a new container.
Take the following Dockerfile:
FROM busybox
RUN echo 'foo' > /tmp/foo.txt
RUN echo 'bar' >> /tmp/foo.txt
and build it:
$ docker build -t so-26220957 .
Sending build context to Docker daemon 47.62 kB
Step 1/3 : FROM busybox
---> 00f017a8c2a6
Step 2/3 : RUN echo 'foo' > /tmp/foo.txt
---> Running in 4dbd01ebf27f
---> 044e1532c690
Removing intermediate container 4dbd01ebf27f
Step 3/3 : RUN echo 'bar' >> /tmp/foo.txt
---> Running in 74d81cb9d2b1
---> 5bd8172529c1
Removing intermediate container 74d81cb9d2b1
Successfully built 5bd8172529c1
You can now start a new container from 00f017a8c2a6, 044e1532c690 and 5bd8172529c1:
$ docker run --rm 00f017a8c2a6 cat /tmp/foo.txt
cat: /tmp/foo.txt: No such file or directory
$ docker run --rm 044e1532c690 cat /tmp/foo.txt
foo
$ docker run --rm 5bd8172529c1 cat /tmp/foo.txt
foo
bar
of course you might want to start a shell to explore the filesystem and try out commands:
$ docker run --rm -it 044e1532c690 sh
/ # ls -l /tmp
total 4
-rw-r--r-- 1 root root 4 Mar 9 19:09 foo.txt
/ # cat /tmp/foo.txt
foo
When one of the Dockerfile command fails, what you need to do is to look for the id of the preceding layer and run a shell in a container created from that id:
docker run --rm -it <id_last_working_layer> bash -il
Once in the container:
try the command that failed, and reproduce the issue
then fix the command and test it
finally update your Dockerfile with the fixed command
If you really need to experiment in the actual layer that failed instead of working from the last working layer, see Drew's answer.
The top answer works in the case that you want to examine the state immediately prior to the failed command.
However, the question asks how to examine the state of the failed container itself. In my situation, the failed command is a build that takes several hours, so rewinding prior to the failed command and running it again takes a long time and is not very helpful.
The solution here is to find the container that failed:
$ docker ps -a
CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
6934ada98de6 42e0228751b3 "/bin/sh -c './utils/" 24 minutes ago Exited (1) About a minute ago sleepy_bell
Commit it to an image:
$ docker commit 6934ada98de6
sha256:7015687976a478e0e94b60fa496d319cdf4ec847bcd612aecf869a72336e6b83
And then run the image [if necessary, running bash]:
$ docker run -it 7015687976a4 [bash -il]
Now you are actually looking at the state of the build at the time that it failed, instead of at the time before running the command that caused the failure.
Update for newer docker versions 20.10 onwards
Linux or macOS
DOCKER_BUILDKIT=0 docker build ...
Windows
# Command line
set DOCKER_BUILDKIT=0 docker build ...
# PowerShell
$env:DOCKER_BUILDKIT=0
Use
DOCKER_BUILDKIT=0 docker build ...
to get the intermediate container hashes as known from older versions.
On newer versions, Buildkit is activated per default. It is recommended to only use it for debugging purposes. Build Kit can make your build faster.
For reference:
Buildkit doesn't support intermediate container hashes: https://github.com/moby/buildkit/issues/1053
Thanks to #David Callanan and #MegaCookie for their inputs.
Docker caches the entire filesystem state after each successful RUN line.
Knowing that:
to examine the latest state before your failing RUN command, comment it out in the Dockerfile (as well as any and all subsequent RUN commands), then run docker build and docker run again.
to examine the state after the failing RUN command, simply add || true to it to force it to succeed; then proceed like above (keep any and all subsequent RUN commands commented out, run docker build and docker run)
Tada, no need to mess with Docker internals or layer IDs, and as a bonus Docker automatically minimizes the amount of work that needs to be re-done.
Currently with the latest docker-desktop, there isn't a way to opt out
of the new Buildkit, which doesn't support debugging yet (follow the
latest updates on this on this GitHub Thread:
https://github.com/moby/buildkit/issues/1472).
Find out at which line in your Dockerfile it is failing.
Add to the top of your Dockerfile: FROM xxx as debug
Add an additional target: FROM xxx as next just one line before the failing command (as you don't want to build that part). Example:
FROM xxx as debug
RUN echo "working command"
FROM xxx as next
RUN echoo "failing command"
Run docker build -f Dockerfile --target debug --tag debug .
Then you can debug the container with: docker run -it debug /bin/sh
You can quit the shell by pressing CTRL P + CTRL Q
If you want to use docker compose build instead of docker build it's possible by adding target: debug in your docker-compose.yml under build.
Then start the container by docker compose run xxxYourServiceNamexxx and use either:
The second top answer to find out how to run a shell inside the container.
Or add ENTRYPOINT /bin/sh before the FROM xxx as next line in your Dockerfile.
Debugging build step failures is indeed very annoying.
The best solution I have found is to make sure that each step that does real work succeeds, and adding a check after those that fails. That way you get a committed layer that contains the outputs of the failed step that you can inspect.
A Dockerfile, with an example after the # Run DB2 silent installer line:
#
# DB2 10.5 Client Dockerfile (Part 1)
#
# Requires
# - DB2 10.5 Client for 64bit Linux ibm_data_server_runtime_client_linuxx64_v10.5.tar.gz
# - Response file for DB2 10.5 Client for 64bit Linux db2rtcl_nr.rsp
#
#
# Using Ubuntu 14.04 base image as the starting point.
FROM ubuntu:14.04
MAINTAINER David Carew <carew#us.ibm.com>
# DB2 prereqs (also installing sharutils package as we use the utility uuencode to generate password - all others are required for the DB2 Client)
RUN dpkg --add-architecture i386 && apt-get update && apt-get install -y sharutils binutils libstdc++6:i386 libpam0g:i386 && ln -s /lib/i386-linux-gnu/libpam.so.0 /lib/libpam.so.0
RUN apt-get install -y libxml2
# Create user db2clnt
# Generate strong random password and allow sudo to root w/o password
#
RUN \
adduser --quiet --disabled-password -shell /bin/bash -home /home/db2clnt --gecos "DB2 Client" db2clnt && \
echo db2clnt:`dd if=/dev/urandom bs=16 count=1 2>/dev/null | uuencode -| head -n 2 | grep -v begin | cut -b 2-10` | chgpasswd && \
adduser db2clnt sudo && \
echo '%sudo ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers
# Install DB2
RUN mkdir /install
# Copy DB2 tarball - ADD command will expand it automatically
ADD v10.5fp9_linuxx64_rtcl.tar.gz /install/
# Copy response file
COPY db2rtcl_nr.rsp /install/
# Run DB2 silent installer
RUN mkdir /logs
RUN (/install/rtcl/db2setup -t /logs/trace -l /logs/log -u /install/db2rtcl_nr.rsp && touch /install/done) || /bin/true
RUN test -f /install/done || (echo ERROR-------; echo install failed, see files in container /logs directory of the last container layer; echo run docker run '<last image id>' /bin/cat /logs/trace; echo ----------)
RUN test -f /install/done
# Clean up unwanted files
RUN rm -fr /install/rtcl
# Login as db2clnt user
CMD su - db2clnt
In my case, I have to have:
DOCKER_BUILDKIT=1 docker build ...
and as mentioned by Jannis Schönleber in his answer, there is currently no debug available in this case (i.e. no intermediate images/containers get created).
What I've found I could do is use the following option:
... --progress=plain ...
and then add various RUN ... or additional lines on existing RUN ... to debug specific commands. This gives you what to me feels like full access (at least if your build is relatively fast).
For example, you could check a variable like so:
RUN echo "Variable NAME = [$NAME]"
If you're wondering whether a file is installed properly, you do:
RUN find /
etc.
In my situation, I had to debug a docker build of a Go application with a private repository and it was quite difficult to do that debugging. I've other details on that here.
If you are using docker-compose to build docker images try to add DOCKER_BUILDKIT=0 before the command to see the last successful layer id
DOCKER_BUILDKIT=0 docker-compose ...
This will temporarily disable DOCKER_BUILDKIT for the command only.
Having the last layer id you can connect to it using the command from the top answer
docker run --rm -it LAST_LAYER_ID sh
my solution would be to see what step failed in the docker file, RUN bundle install in my case,
and change it to
RUN bundle install || cat <path to the file containing the error>
This has the double effect of printing out the reason for the failure, AND this intermediate step is not figured as a failed one by docker build. so it's not deleted, and can be inspected via:
docker run --rm -it <id_last_working_layer> bash -il
in there you can even re run your failed command and test it live.
What I would do is comment out the Dockerfile below and including the offending line. Then you can run the container and run the docker commands by hand, and look at the logs in the usual way. E.g. if the Dockerfile is
RUN foo
RUN bar
RUN baz
and it's dying at bar I would do
RUN foo
# RUN bar
# RUN baz
Then
$ docker build -t foo .
$ docker run -it foo bash
container# bar
...grep logs...
Still using BuildKit, as in Alexis Wilke's answer, you can use ktock/buildg.
See "Interactive debugger for Dockerfile" from Kohei Tokunaga
buildg is a tool to interactively debug Dockerfile based on BuildKit.
Source-level inspection
Breakpoints and step execution
Interactive shell on a step with your own debugigng tools
Based on BuildKit (needs unmerged patches)
Supports rootless
Example:
$ buildg.sh debug --image=ubuntu:22.04 /tmp/ctx
WARN[2022-05-09T01:40:21Z] using host network as the default
#1 [internal] load .dockerignore
#1 transferring context: 2B done
#1 DONE 0.1s
#2 [internal] load build definition from Dockerfile
#2 transferring dockerfile: 195B done
#2 DONE 0.1s
#3 [internal] load metadata for docker.io/library/busybox:latest
#3 DONE 3.0s
#4 [build1 1/2] FROM docker.io/library/busybox#sha256:d2b53584f580310186df7a2055ce3ff83cc0df6caacf1e3489bff8cf5d0af5d8
#4 resolve docker.io/library/busybox#sha256:d2b53584f580310186df7a2055ce3ff83cc0df6caacf1e3489bff8cf5d0af5d8 0.0s done
#4 sha256:50e8d59317eb665383b2ef4d9434aeaa394dcd6f54b96bb7810fdde583e9c2d1 772.81kB / 772.81kB 0.2s done
Filename: "Dockerfile"
2| RUN echo hello > /hello
3|
4| FROM busybox AS build2
=> 5| RUN echo hi > /hi
6|
7| FROM scratch
8| COPY --from=build1 /hello /
>>> break 2
>>> breakpoints
[0]: line 2
>>> continue
#4 extracting sha256:50e8d59317eb665383b2ef4d9434aeaa394dcd6f54b96bb7810fdde583e9c2d1 0.0s done
#4 DONE 0.3s
...