I am trying to run a Rails app through Docker that is using Rails 3.2.11. The gem nokogiri is not being installed when I run bundle install.
I have this in my Gemfile:
gem 'nokogiri', '~> 1.6.8.rc2'
And this in my LOCK file:
nokogiri (1.6.8.rc2)
mini_portile2 (~> 2.1.0)
When I try running bundle install through docker, I get the following error messages:
************************************************************************
Extracting libxml2-2.9.3.tar.gz into tmp/x86_64-pc-linux-gnu/ports/libxml2/2.9.3... OK
Running 'configure' for libxml2 2.9.3... OK
Running 'compile' for libxml2 2.9.3... ERROR, review
'/var/www/docker_example/activemodel/ruby/1.9.1/gems/nokogiri-1.6.8.rc2/ext/nokogiri/tmp/x86_64-pc-linux-gnu/ports/libxml2/2.9.3/compile.log'
to see what happened. Last lines are:
========================================================================
CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash
/var/www/docker_example/activemodel/ruby/1.9.1/gems/nokogiri-1.6.8.rc2/ext/nokogiri/tmp/x86_64-pc-linux-gnu/ports/libxml2/2.9.3/libxml2-2.9.3/missing
aclocal-1.15 -I m4
/var/www/docker_example/activemodel/ruby/1.9.1/gems/nokogiri-1.6.8.rc2/ext/nokogiri/tmp/x86_64-pc-linux-gnu/ports/libxml2/2.9.3/libxml2-2.9.3/missing:
line 81: aclocal-1.15: command not found
WARNING: 'aclocal-1.15' is missing on your system.
You should only need it if you modified 'acinclude.m4' or
'configure.ac' or m4 files included by 'configure.ac'.
The 'aclocal' program is part of the GNU Automake package:
<http://www.gnu.org/software/automake>
It also requires GNU Autoconf, GNU m4 and Perl in order to run:
<http://www.gnu.org/software/autoconf>
<http://www.gnu.org/software/m4/>
<http://www.perl.org/>
make: *** [aclocal.m4] Error 127
========================================================================
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of
necessary libraries and/or headers. Check the mkmf.log file for more
details. You may need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/usr/bin/ruby1.9.1
--help
--clean
--use-system-libraries
--enable-static
--disable-static
--with-zlib-dir
--without-zlib-dir
--with-zlib-include
--without-zlib-include=${zlib-dir}/include
--with-zlib-lib
--without-zlib-lib=${zlib-dir}/lib
--enable-cross-build
--disable-cross-build
/var/www/docker_example/activemodel/ruby/1.9.1/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:366:in `block
in execute': Failed to complete compile task (RuntimeError)
from /var/www/docker_example/activemodel/ruby/1.9.1/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in
`chdir'
from /var/www/docker_example/activemodel/ruby/1.9.1/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in
`execute'
from /var/www/docker_example/activemodel/ruby/1.9.1/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:111:in
`compile'
from /var/www/docker_example/activemodel/ruby/1.9.1/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:150:in
`cook'
from extconf.rb:288:in `block (2 levels) in process_recipe'
from extconf.rb:181:in `block in chdir_for_build'
from extconf.rb:180:in `chdir'
from extconf.rb:180:in `chdir_for_build'
from extconf.rb:287:in `block in process_recipe'
from extconf.rb:186:in `tap'
from extconf.rb:186:in `process_recipe'
from extconf.rb:477:in `<main>'
Gem files will remain installed in /var/www/docker_example/activemodel/ruby/1.9.1/gems/nokogiri-1.6.8.rc2 for
inspection.
Results logged to /var/www/docker_example/activemodel/ruby/1.9.1/gems/nokogiri-1.6.8.rc2/ext/nokogiri/gem_make.out
An error occurred while installing nokogiri (1.6.8.rc2), and Bundler cannot continue.
Make sure that `gem install nokogiri -v '1.6.8.rc2'` succeeds before bundling.
In Gemfile:
fog was resolved to 1.23.0, which depends on
nokogiri
I've tried modifying the Gem File a few times but it keeps resulting in Nokogiri not being installed properly.
Any help is greatly appreciated!
Make sure libxml2 is installed on your machine. Is it available to install with brew install or apt-get install depending on your OS.
Update: also if you're trying to run your app inside of docker container add libxml2 too and install nokogiri with RUN gem install nokogiri -v '1.6.8.1' in your Dockerfile
Related
Use root user installed rubygems.
# yum install rubygems -y
When check ruby's version, got
# ruby -v
ruby 2.5.9p229 (2021-04-05 revision 67939) [x86_64-linux]
Gem's version:
# gem -v
2.7.6.3
When install a gem, got
# gem install fluent-plugin-kinesis
Building native extensions. This could take a while...
ERROR: Error installing fluent-plugin-kinesis:
ERROR: Failed to build gem native extension.
current directory: /usr/local/share/gems/gems/msgpack-1.4.2/ext/msgpack
/usr/bin/ruby -r ./siteconf20210825-20925-17fyw57.rb extconf.rb
mkmf.rb can't find header files for ruby at /usr/share/include/ruby.h
extconf failed, exit code 1
Gem files will remain installed in /usr/local/share/gems/gems/msgpack-1.4.2 for inspection.
Results logged to /usr/local/lib64/gems/ruby/msgpack-1.4.2/gem_make.out
Should I install a high version ruby? It's the default one on the system.
update
I installed ruby-devel
# yum install ruby-devel.x86_64
Run install fluent-plugin-kinesis gem again
# gem install fluent-plugin-kinesis
Building native extensions. This could take a while...
ERROR: Error installing fluent-plugin-kinesis:
ERROR: Failed to build gem native extension.
current directory: /usr/local/share/gems/gems/msgpack-1.4.2/ext/msgpack
/usr/bin/ruby -r ./siteconf20210826-11878-18i9eps.rb extconf.rb
checking for ruby/st.h... *** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib64
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/usr/bin/$(RUBY_BASE_NAME)
/usr/share/ruby/mkmf.rb:456:in `try_do': The compiler failed to generate an executable file. (RuntimeError)
You have to install development tools first.
from /usr/share/ruby/mkmf.rb:590:in `try_cpp'
from /usr/share/ruby/mkmf.rb:1098:in `block in have_header'
from /usr/share/ruby/mkmf.rb:948:in `block in checking_for'
from /usr/share/ruby/mkmf.rb:350:in `block (2 levels) in postpone'
from /usr/share/ruby/mkmf.rb:320:in `open'
from /usr/share/ruby/mkmf.rb:350:in `block in postpone'
from /usr/share/ruby/mkmf.rb:320:in `open'
from /usr/share/ruby/mkmf.rb:346:in `postpone'
from /usr/share/ruby/mkmf.rb:947:in `checking_for'
from /usr/share/ruby/mkmf.rb:1097:in `have_header'
from extconf.rb:3:in `<main>'
To see why this extension failed to compile, please check the mkmf.log which can be found here:
/usr/local/lib64/gems/ruby/msgpack-1.4.2/mkmf.log
extconf failed, exit code 1
Gem files will remain installed in /usr/local/share/gems/gems/msgpack-1.4.2 for inspection.
Results logged to /usr/local/lib64/gems/ruby/msgpack-1.4.2/gem_make.out
For other gems works well.
Take a look at the docs or this answer.
Install Ruby >= 2.4 on your local environment. In addition, install ruby-dev package via Package Manager to build native extension gems.
I believe in CentOS ruby-dev equivalent is ruby-devel. You can confirm it by running yum search ruby-dev
You'll find 2 packages, one i686 and another x86_64. You can find which one you need by running lscpu | grep Arch.
Then simply download the package, and rerun gem install
Cocoapods installation failed,
Version:
macOS Catalina 10.15.4
ruby 2.6.3p62 (2019-04-16 revision 67580) [universal.x86_64-darwin19]
Homebrew 2.2.6
gem 3.1.2
gem sources -l
*** CURRENT SOURCES ***
https://gems.ruby-china.com
sudo gem install cocoapod
or
sudo gem install -n /usr/local/bin cocoapods
Error result:
Building native extensions. This could take a while...
ERROR: Error installing cocoapods:
ERROR: Failed to build gem native extension.
current directory: /Library/Ruby/Gems/2.6.0/gems/ffi-1.12.2/ext/ffi_c
/System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/bin/ruby -I /Library/Ruby/Site/2.6.0 -r ./siteconf20200409-15528-unemw5.rb extconf.rb
checking for ffi.h... * extconf.rb failed *
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/bin/$(RUBY_BASE_NAME)
--with-ffi_c-dir
--without-ffi_c-dir
--with-ffi_c-include
--without-ffi_c-include=${ffi_c-dir}/include
--with-ffi_c-lib
--without-ffi_c-lib=${ffi_c-dir}/lib
--enable-system-libffi
--disable-system-libffi
--with-libffi-config
--without-libffi-config
--with-pkg-config
--without-pkg-config
/System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/mkmf.rb:467:in try_do': The compiler failed to generate an executable file. (RuntimeError)
You have to install development tools first.
from /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/mkmf.rb:585:inblock in try_compile'
from /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/mkmf.rb:534:in with_werror'
from /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/mkmf.rb:585:intry_compile'
from /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/mkmf.rb:1109:in block in have_header'
from /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/mkmf.rb:959:inblock in checking_for'
from /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/mkmf.rb:361:in block (2 levels) in postpone'
from /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/mkmf.rb:331:inopen'
from /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/mkmf.rb:361:in block in postpone'
from /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/mkmf.rb:331:inopen'
from /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/mkmf.rb:357:in postpone'
from /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/mkmf.rb:958:inchecking_for'
from /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/mkmf.rb:1108:in have_header'
from extconf.rb:10:insystem_libffi_usable?'
from extconf.rb:34:in `'
To see why this extension failed to compile, please check the mkmf.log which can be found here:
/Library/Ruby/Gems/2.6.0/extensions/universal-darwin-19/2.6.0/ffi-1.12.2/mkmf.log
extconf failed, exit code 1
Gem files will remain installed in /Library/Ruby/Gems/2.6.0/gems/ffi-1.12.2 for inspection.
Results logged to /Library/Ruby/Gems/2.6.0/extensions/universal-darwin-19/2.6.0/ffi-1.12.2/gem_make.out
If you solve this problem?
I fixed it by running
brew install cocoapods
And
You may want to remove it:
rm '/usr/local/bin/pod'
To force the link and overwrite all conflicting files:
brew link --overwrite cocoapods
Install homebrew if you haven't already. https://brew.sh/
Try adding --disable-system-libffi to the gem install command.
This worked for me:
gem inst cocoapods -- --disable-system-libffi
These lines of code can help to install any pods to your project on a Macbook M1.
sudo arch -x86_64 gem install ffi
arch -x86_64 pod install
I installed, and reinstalled, Nokogiri multiple times, with and without sudo, and when running bundle install I get in my console:
Fetching nokogiri 1.10.7
Installing nokogiri 1.10.7 with native extensions
Gem::Ext::BuildError: ERROR: Failed to build gem native extension.
current directory: /home/april/.rvm/gems/ruby-2.5.0/gems/nokogiri-1.10.7/ext/nokogiri
/home/april/.rvm/rubies/ruby-2.5.0/bin/ruby -I /home/april/.rvm/rubies/ruby-2.5.0/lib/ruby/site_ruby/2.5.0 -r
./siteconf20200331-50466-133fhom.rb extconf.rb
checking if the C compiler accepts ... *** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/home/april/.rvm/rubies/ruby-2.5.0/bin/$(RUBY_BASE_NAME)
--help
--clean
/home/april/.rvm/rubies/ruby-2.5.0/lib/ruby/2.5.0/mkmf.rb:456:in `try_do': The compiler failed to generate an
executable file. (RuntimeError)
You have to install development tools first.
from /home/april/.rvm/rubies/ruby-2.5.0/lib/ruby/2.5.0/mkmf.rb:574:in `block in try_compile'
from /home/april/.rvm/rubies/ruby-2.5.0/lib/ruby/2.5.0/mkmf.rb:521:in `with_werror'
from /home/april/.rvm/rubies/ruby-2.5.0/lib/ruby/2.5.0/mkmf.rb:574:in `try_compile'
from extconf.rb:138:in `nokogiri_try_compile'
from extconf.rb:162:in `block in add_cflags'
from /home/april/.rvm/rubies/ruby-2.5.0/lib/ruby/2.5.0/mkmf.rb:632:in `with_cflags'
from extconf.rb:161:in `add_cflags'
from extconf.rb:416:in `<main>'
To see why this extension failed to compile, please check the mkmf.log which can be found here:
/home/april/.rvm/gems/ruby-2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7/mkmf.log
extconf failed, exit code 1
Gem files will remain installed in /home/april/.rvm/gems/ruby-2.5.0/gems/nokogiri-1.10.7 for inspection.
Results logged to /home/april/.rvm/gems/ruby-2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7/gem_make.out
An error occurred while installing nokogiri (1.10.7), and Bundler cannot continue.
Make sure that `gem install nokogiri -v '1.10.7'` succeeds before bundling.
In Gemfile:
activeadmin_addons was resolved to 1.6.0, which depends on
xdan-datetimepicker-rails was resolved to 2.5.4, which depends on
rails was resolved to 5.1.5, which depends on
actioncable was resolved to 5.1.5, which depends on
actionpack was resolved to 5.1.5, which depends on
actionview was resolved to 5.1.5, which depends on
rails-dom-testing was resolved to 2.0.3, which depends on
nokogiri
I also tried re-installing libxml2 and libxslt and I still keep running into this issue.
I'm having some trouble installing jekyll. Can't quite figure out how to patch the missing link.
Heres the full post:
root#cherob:~# gem install jekyll
Building native extensions. This could take a while...
ERROR: Error installing jekyll:
ERROR: Failed to build gem native extension.
/usr/bin/ruby2.1 extconf.rb
checking for ffi.h... *** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/usr/bin/ruby2.1
--with-ffi_c-dir
--without-ffi_c-dir
--with-ffi_c-include
--without-ffi_c-include=${ffi_c-dir}/include
--with-ffi_c-lib
--without-ffi_c-lib=${ffi_c-dir}/lib
--with-libffi-config
--without-libffi-config
--with-pkg-config
--without-pkg-config
/usr/lib/ruby/2.1.0/mkmf.rb:456:in `try_do': The compiler failed to generate an executable file. (RuntimeError)
You have to install development tools first.
from /usr/lib/ruby/2.1.0/mkmf.rb:587:in `try_cpp'
from /usr/lib/ruby/2.1.0/mkmf.rb:1067:in `block in have_header'
from /usr/lib/ruby/2.1.0/mkmf.rb:918:in `block in checking_for'
from /usr/lib/ruby/2.1.0/mkmf.rb:351:in `block (2 levels) in postpone'
from /usr/lib/ruby/2.1.0/mkmf.rb:321:in `open'
from /usr/lib/ruby/2.1.0/mkmf.rb:351:in `block in postpone'
from /usr/lib/ruby/2.1.0/mkmf.rb:321:in `open'
from /usr/lib/ruby/2.1.0/mkmf.rb:347:in `postpone'
from /usr/lib/ruby/2.1.0/mkmf.rb:917:in `checking_for'
from /usr/lib/ruby/2.1.0/mkmf.rb:1066:in `have_header'
from extconf.rb:16:in `<main>'
extconf failed, exit code 1
Gem files will remain installed in /var/lib/gems/2.1.0/gems/ffi-1.9.18 for inspection.
Results logged to /var/lib/gems/2.1.0/extensions/x86_64-linux/2.1.0
/ffi-1.9.18/gem_make.outstrong text
Ruby is installed:
root#cherob:~# ruby -v
ruby 2.1.5p273 (2014-11-13) [x86_64-linux-gnu]
Debain 8 is installed
-
Apache2 is installed:
root#cherob:~# apache2 -v
Server version: Apache/2.4.10 (Debian)
Server built: Sep 20 2017 04:37:43
If you have an idea I would be glad if you forward me it.
Other thanks already times in advance
Robin
Such error usually means that you don't have build tools installed.
As far as I understood you are using linux, so you can run something like
apt-get install build-essential
This command is for deb-bases distros. So you can use something similar if you use a different distro.
I had the same error while installing. You will have to install des Ruby dev packacke:
sudo apt-get install ruby2.4-dev
This will install the developement package for 2.4. You should install 2.1 as you are using this version. I had the problem, that the package could not be found in the repositories. So I used the following PPA:
$ sudo apt-add-repository ppa:brightbox/ruby-ng
$ sudo apt-get update
https://launchpad.net/~brightbox/+archive/ubuntu/ruby-ng
Version 2.1 is also available in this repository.
I have tried to install mechanize on my Mac but I always get error. I tried all answers given on the site but none worked for me.
I have tried sudo gem install mechanize and I got error below.
Password:
Building native extensions. This could take a while...
ERROR: Error installing mechanize:
ERROR: Failed to build gem native extension.
current directory: /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.8/ext/nokogiri
/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby -r ./siteconf20160703-8312-16oc548.rb extconf.rb
Using pkg-config version 1.1.7
checking if the C compiler accepts ... yes
checking if the C compiler accepts -Wno-error=unused-command-line-argument-hard-error-in-future... no
Building nokogiri using packaged libraries.
Using mini_portile version 2.1.0
checking for iconv.h... yes
checking for gzdopen() in -lz... yes
checking for iconv... yes
************************************************************************
IMPORTANT NOTICE:
Building Nokogiri with a packaged version of libxml2-2.9.4.
Team Nokogiri will keep on doing their best to provide security
updates in a timely manner, but if this is a concern for you and want
to use the system library instead; abort this installation process and
reinstall nokogiri as follows:
gem install nokogiri -- --use-system-libraries
[--with-xml2-config=/path/to/xml2-config]
[--with-xslt-config=/path/to/xslt-config]
If you are using Bundler, tell it to use the option:
bundle config build.nokogiri --use-system-libraries
bundle install
Note, however, that nokogiri is not fully compatible with arbitrary
versions of libxml2 provided by OS/package vendors.
************************************************************************
Extracting libxml2-2.9.4.tar.gz into tmp/x86_64-apple-darwin15/ports/libxml2/2.9.4... OK
Running 'configure' for libxml2 2.9.4... OK
Running 'compile' for libxml2 2.9.4... ERROR, review '/Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.8/ext/nokogiri/tmp/x86_64-apple-darwin15/ports/libxml2/2.9.4/compile.log' to see what happened. Last lines are:
========================================================================
unsigned short* in = (unsigned short*) inb;
^~~~~~~~~~~~~~~~~~~~~
encoding.c:815:27: warning: cast from 'unsigned char *' to 'unsigned short *' increases required alignment from 1 to 2 [-Wcast-align]
unsigned short* out = (unsigned short*) outb;
^~~~~~~~~~~~~~~~~~~~~~
4 warnings generated.
CC error.lo
CC parserInternals.lo
CC parser.lo
CC tree.lo
CC hash.lo
CC list.lo
CC xmlIO.lo
xmlIO.c:1450:52: error: use of undeclared identifier 'LZMA_OK'
ret = (__libxml2_xzclose((xzFile) context) == LZMA_OK ) ? 0 : -1;
^
1 error generated.
make[2]: *** [xmlIO.lo] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
========================================================================
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby
--help
--clean
--use-system-libraries
--enable-static
--disable-static
--with-zlib-dir
--without-zlib-dir
--with-zlib-include
--without-zlib-include=${zlib-dir}/include
--with-zlib-lib
--without-zlib-lib=${zlib-dir}/lib
--enable-cross-build
--disable-cross-build
/Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:366:in `block in execute': Failed to complete compile task (RuntimeError)
from /Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in `chdir'
from /Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in `execute'
from /Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:111:in `compile'
from /Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:150:in `cook'
from extconf.rb:364:in `block (2 levels) in process_recipe'
from extconf.rb:257:in `block in chdir_for_build'
from extconf.rb:256:in `chdir'
from extconf.rb:256:in `chdir_for_build'
from extconf.rb:363:in `block in process_recipe'
from extconf.rb:262:in `tap'
from extconf.rb:262:in `process_recipe'
from extconf.rb:555:in `<main>'
To see why this extension failed to compile, please check the mkmf.log which can be found here:
/Library/Ruby/Gems/2.0.0/extensions/universal-darwin-15/2.0.0/nokogiri-1.6.8/mkmf.log
extconf failed, exit code 1
Gem files will remain installed in /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.8 for inspection.
Results logged to /Library/Ruby/Gems/2.0.0/extensions/universal-darwin-15/2.0.0/nokogiri-1.6.8/gem_make.out
I have install Xcode command line and when I do this
xcode-select -p
I get /Applications/Xcode.app/Contents/Developer
this is also the error when I try nokogiri
Admins-MBP:~ admin$ sudo gem install nokogiri
Password:
Building native extensions. This could take a while...
ERROR: Error installing nokogiri:
ERROR: Failed to build gem native extension.
current directory: /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.8/ext/nokogiri
/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby -r ./siteconf20160703-27126-1ef91wn.rb extconf.rb
Using pkg-config version 1.1.7
checking if the C compiler accepts ... yes
checking if the C compiler accepts -Wno-error=unused-command-line-argument-hard-error-in-future... no
Building nokogiri using packaged libraries.
Using mini_portile version 2.1.0
checking for iconv.h... yes
checking for gzdopen() in -lz... yes
checking for iconv... yes
************************************************************************
IMPORTANT NOTICE:
Building Nokogiri with a packaged version of libxml2-2.9.4.
Team Nokogiri will keep on doing their best to provide security
updates in a timely manner, but if this is a concern for you and want
to use the system library instead; abort this installation process and
reinstall nokogiri as follows:
gem install nokogiri -- --use-system-libraries
[--with-xml2-config=/path/to/xml2-config]
[--with-xslt-config=/path/to/xslt-config]
If you are using Bundler, tell it to use the option:
bundle config build.nokogiri --use-system-libraries
bundle install
Note, however, that nokogiri is not fully compatible with arbitrary
versions of libxml2 provided by OS/package vendors.
************************************************************************
Extracting libxml2-2.9.4.tar.gz into tmp/x86_64-apple-darwin15/ports/libxml2/2.9.4... OK
Running 'configure' for libxml2 2.9.4... OK
Running 'compile' for libxml2 2.9.4... ERROR, review '/Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.8/ext/nokogiri/tmp/x86_64-apple-darwin15/ports/libxml2/2.9.4/compile.log' to see what happened. Last lines are:
========================================================================
"_libiconv", referenced from:
_xmlIconvWrapper in libxml2.a(encoding.o)
"_libiconv_close", referenced from:
_xmlFindCharEncodingHandler in libxml2.a(encoding.o)
_xmlCharEncCloseFunc in libxml2.a(encoding.o)
"_libiconv_open", referenced from:
_xmlFindCharEncodingHandler in libxml2.a(encoding.o)
"_lzma_auto_decoder", referenced from:
_xz_head in libxml2.a(xzlib.o)
"_lzma_code", referenced from:
_xz_decomp in libxml2.a(xzlib.o)
"_lzma_end", referenced from:
___libxml2_xzclose in libxml2.a(xzlib.o)
"_lzma_properties_decode", referenced from:
_is_format_lzma in libxml2.a(xzlib.o)
ld: symbol(s) not found for architecture i386
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [xmllint] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
========================================================================
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby
--help
--clean
--use-system-libraries
--enable-static
--disable-static
--with-zlib-dir
--without-zlib-dir
--with-zlib-include
--without-zlib-include=${zlib-dir}/include
--with-zlib-lib
--without-zlib-lib=${zlib-dir}/lib
--enable-cross-build
--disable-cross-build
/Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:366:in `block in execute': Failed to complete compile task (RuntimeError)
from /Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in `chdir'
from /Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in `execute'
from /Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:111:in `compile'
from /Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:150:in `cook'
from extconf.rb:364:in `block (2 levels) in process_recipe'
from extconf.rb:257:in `block in chdir_for_build'
from extconf.rb:256:in `chdir'
from extconf.rb:256:in `chdir_for_build'
from extconf.rb:363:in `block in process_recipe'
from extconf.rb:262:in `tap'
from extconf.rb:262:in `process_recipe'
from extconf.rb:555:in `<main>'
To see why this extension failed to compile, please check the mkmf.log which can be found here:
/Library/Ruby/Gems/2.0.0/extensions/universal-darwin-15/2.0.0/nokogiri-1.6.8/mkmf.log
extconf failed, exit code 1
Gem files will remain installed in /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.8 for inspection.
Results logged to /Library/Ruby/Gems/2.0.0/extensions/universal-darwin-15/2.0.0/nokogiri-1.6.8/gem_make.out
When I use
Admins-MBP:~ admin$ sudo gem install nokogiri -v '1.6.7.2'
Password:
Fetching: mini_portile2-2.0.0.gem (100%)
Successfully installed mini_portile2-2.0.0
Fetching: nokogiri-1.6.7.2.gem (100%)
Building native extensions. This could take a while...
ERROR: Error installing nokogiri:
ERROR: Failed to build gem native extension.
current directory: /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/ext/nokogiri
/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby -r ./siteconf20160703-32388-1almq9.rb extconf.rb
checking if the C compiler accepts ... yes
checking if the C compiler accepts -Wno-error=unused-command-line-argument-hard-error-in-future... no
Building nokogiri using packaged libraries.
Using mini_portile version 2.0.0
checking for iconv.h... yes
checking for gzdopen() in -lz... yes
checking for iconv... yes
************************************************************************
IMPORTANT NOTICE:
Building Nokogiri with a packaged version of libxml2-2.9.2
with the following patches applied:
- 0001-Revert-Missing-initialization-for-the-catalog-module.patch
- 0002-Fix-missing-entities-after-CVE-2014-3660-fix.patch
- 0003-Stop-parsing-on-entities-boundaries-errors.patch
- 0004-Cleanup-conditional-section-error-handling.patch
- 0005-CVE-2015-1819-Enforce-the-reader-to-run-in-constant-.patch
- 0006-Another-variation-of-overflow-in-Conditional-section.patch
- 0007-Fix-an-error-in-previous-Conditional-section-patch.patch
- 0008-CVE-2015-8035-Fix-XZ-compression-support-loop.patch
- 0009-Updated-config.guess.patch
- 0010-Fix-parsering-short-unclosed-comment-uninitialized-access.patch
- 0011-Avoid-extra-processing-of-MarkupDecl-when-EOF.patch
- 0012-Avoid-processing-entities-after-encoding-conversion-.patch
- 0013-CVE-2015-7497-Avoid-an-heap-buffer-overflow-in-xmlDi.patch
- 0014-CVE-2015-5312-Another-entity-expansion-issue.patch
- 0015-Add-xmlHaltParser-to-stop-the-parser.patch
- 0016-Detect-incoherency-on-GROW.patch
- 0017-CVE-2015-7500-Fix-memory-access-error-due-to-incorre.patch
- 0018-CVE-2015-8242-Buffer-overead-with-HTML-parser-in-pus.patch
- 0019-Do-not-print-error-context-when-there-is-none.patch
- 0020-xmlStopParser-reset-errNo.patch
- 0021-Reuse-xmlHaltParser-where-it-makes-sense.patch
Team Nokogiri will keep on doing their best to provide security
updates in a timely manner, but if this is a concern for you and want
to use the system library instead; abort this installation process and
reinstall nokogiri as follows:
gem install nokogiri -- --use-system-libraries
[--with-xml2-config=/path/to/xml2-config]
[--with-xslt-config=/path/to/xslt-config]
If you are using Bundler, tell it to use the option:
bundle config build.nokogiri --use-system-libraries
bundle install
Note, however, that nokogiri is not fully compatible with arbitrary
versions of libxml2 provided by OS/package vendors.
************************************************************************
Extracting libxml2-2.9.2.tar.gz into tmp/x86_64-apple-darwin15/ports/libxml2/2.9.2... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0001-Revert-Missing-initialization-for-the-catalog-module.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0002-Fix-missing-entities-after-CVE-2014-3660-fix.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0003-Stop-parsing-on-entities-boundaries-errors.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0004-Cleanup-conditional-section-error-handling.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0005-CVE-2015-1819-Enforce-the-reader-to-run-in-constant-.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0006-Another-variation-of-overflow-in-Conditional-section.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0007-Fix-an-error-in-previous-Conditional-section-patch.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0008-CVE-2015-8035-Fix-XZ-compression-support-loop.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0009-Updated-config.guess.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0010-Fix-parsering-short-unclosed-comment-uninitialized-access.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0011-Avoid-extra-processing-of-MarkupDecl-when-EOF.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0012-Avoid-processing-entities-after-encoding-conversion-.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0013-CVE-2015-7497-Avoid-an-heap-buffer-overflow-in-xmlDi.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0014-CVE-2015-5312-Another-entity-expansion-issue.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0015-Add-xmlHaltParser-to-stop-the-parser.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0016-Detect-incoherency-on-GROW.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0017-CVE-2015-7500-Fix-memory-access-error-due-to-incorre.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0018-CVE-2015-8242-Buffer-overead-with-HTML-parser-in-pus.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0019-Do-not-print-error-context-when-there-is-none.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0020-xmlStopParser-reset-errNo.patch... OK
Running git apply with /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/patches/libxml2/0021-Reuse-xmlHaltParser-where-it-makes-sense.patch... OK
Running 'configure' for libxml2 2.9.2... OK
Running 'compile' for libxml2 2.9.2... ERROR, review '/Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2/ext/nokogiri/tmp/x86_64-apple-darwin15/ports/libxml2/2.9.2/compile.log' to see what happened. Last lines are:
========================================================================
"_gzwrite", referenced from:
_xmlGzfileWrite in libxml2.a(xmlIO.o)
"_inflate", referenced from:
_xmlNanoHTTPRead in libxml2.a(nanohttp.o)
"_inflateEnd", referenced from:
_xmlNanoHTTPFreeCtxt in libxml2.a(nanohttp.o)
"_inflateInit2_", referenced from:
_xmlNanoHTTPScanAnswer in libxml2.a(nanohttp.o)
"_libiconv", referenced from:
_xmlIconvWrapper in libxml2.a(encoding.o)
"_libiconv_close", referenced from:
_xmlFindCharEncodingHandler in libxml2.a(encoding.o)
_xmlCharEncCloseFunc in libxml2.a(encoding.o)
"_libiconv_open", referenced from:
_xmlFindCharEncodingHandler in libxml2.a(encoding.o)
ld: symbol(s) not found for architecture i386
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [xmllint] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
========================================================================
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby
--help
--clean
--use-system-libraries
--enable-static
--disable-static
--with-zlib-dir
--without-zlib-dir
--with-zlib-include
--without-zlib-include=${zlib-dir}/include
--with-zlib-lib
--without-zlib-lib=${zlib-dir}/lib
--enable-cross-build
--disable-cross-build
/Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.0.0/lib/mini_portile2/mini_portile.rb:366:in `block in execute': Failed to complete compile task (RuntimeError)
from /Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.0.0/lib/mini_portile2/mini_portile.rb:337:in `chdir'
from /Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.0.0/lib/mini_portile2/mini_portile.rb:337:in `execute'
from /Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.0.0/lib/mini_portile2/mini_portile.rb:111:in `compile'
from /Library/Ruby/Gems/2.0.0/gems/mini_portile2-2.0.0/lib/mini_portile2/mini_portile.rb:150:in `cook'
from extconf.rb:289:in `block (2 levels) in process_recipe'
from extconf.rb:182:in `block in chdir_for_build'
from extconf.rb:181:in `chdir'
from extconf.rb:181:in `chdir_for_build'
from extconf.rb:288:in `block in process_recipe'
from extconf.rb:187:in `tap'
from extconf.rb:187:in `process_recipe'
from extconf.rb:478:in `<main>'
To see why this extension failed to compile, please check the mkmf.log which can be found here:
/Library/Ruby/Gems/2.0.0/extensions/universal-darwin-15/2.0.0/nokogiri-1.6.7.2/mkmf.log
extconf failed, exit code 1
Gem files will remain installed in /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.7.2 for inspection.
Results logged to /Library/Ruby/Gems/2.0.0/extensions/universal-darwin-15/2.0.0/nokogiri-1.6.7.2/gem_make.out
another error
Admins-MBP:~ admin$ sudo gem install nokogiri -- --use-system-libraries --with-xslt-dir=/usr/local/opt/libxslt --with-iconv-dir=/usr/local/opt/libiconv --with-xml2-dir=/usr/local/opt/libxml2 --with-xml2-config=/usr/local/opt/libxml2/bin/xml2-config --with-xml2-include=/usr/local/opt/libxml2/include/libxml2 --with-xslt-config=/usr/local/opt/libxslt/bin/xslt-config
Password:
Building native extensions with: '--use-system-libraries --with-xslt-dir=/usr/local/opt/libxslt --with-iconv-dir=/usr/local/opt/libiconv --with-xml2-dir=/usr/local/opt/libxml2 --with-xml2-config=/usr/local/opt/libxml2/bin/xml2-config --with-xml2-include=/usr/local/opt/libxml2/include/libxml2 --with-xslt-config=/usr/local/opt/libxslt/bin/xslt-config'
This could take a while...
ERROR: Error installing nokogiri:
ERROR: Failed to build gem native extension.
current directory: /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.8/ext/nokogiri
/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby -r ./siteconf20160703-514-1ycei3y.rb extconf.rb --use-system-libraries --with-xslt-dir=/usr/local/opt/libxslt --with-iconv-dir=/usr/local/opt/libiconv --with-xml2-dir=/usr/local/opt/libxml2 --with-xml2-config=/usr/local/opt/libxml2/bin/xml2-config --with-xml2-include=/usr/local/opt/libxml2/include/libxml2 --with-xslt-config=/usr/local/opt/libxslt/bin/xslt-config
Using pkg-config version 1.1.7
checking if the C compiler accepts ... yes
checking if the C compiler accepts -Wno-error=unused-command-line-argument-hard-error-in-future... no
Building nokogiri using system libraries.
checking for libexslt... no
ERROR: cannot discover where libxml2 is located on your system. please make sure `pkg-config` is installed.
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby
--help
--clean
--use-system-libraries
--with-zlib-dir
--without-zlib-dir
--with-zlib-include
--without-zlib-include=${zlib-dir}/include
--with-zlib-lib
--without-zlib-lib=${zlib-dir}/lib
--with-xml2-dir
--with-xml2-include=${xml2-dir}/include
--with-xml2-lib
--without-xml2-lib=${xml2-dir}/lib
--with-xslt-dir
--with-xslt-include
--without-xslt-include=${xslt-dir}/include
--with-xslt-lib
--without-xslt-lib=${xslt-dir}/lib
--with-exslt-dir
--without-exslt-dir
--with-exslt-include
--without-exslt-include=${exslt-dir}/include
--with-exslt-lib
--without-exslt-lib=${exslt-dir}/lib
--with-libexslt-config
--without-libexslt-config
--with-pkg-config
--without-pkg-config
--with-pkg-config
--without-pkg-config
--with-override-variables
--without-override-variables
To see why this extension failed to compile, please check the mkmf.log which can be found here:
/Library/Ruby/Gems/2.0.0/extensions/universal-darwin-15/2.0.0/nokogiri-1.6.8/mkmf.log
extconf failed, exit code 1
Gem files will remain installed in /Library/Ruby/Gems/2.0.0/gems/nokogiri-1.6.8 for inspection.
Results logged to /Library/Ruby/Gems/2.0.0/extensions/universal-darwin-15/2.0.0/nokogiri-1.6.8/gem_make.out
I just had the same issue. Consider installing rbenv https://github.com/rbenv/rbenv which makes it easy to switch between installed versions of Ruby. With rbenv you can download/install almost any version of Ruby and then install the mechanize Gem.
—OR—
Run this command for CL tools:
$ xcode-select --install
You will be prompted to install tools or receive this error:
xcode-select: error: command line tools are already installed, use "Software Update" to install updates
The run these commands to install the Gem (use sudo at your own discretion):
gem update --system
gem uninstall nokogiri
echo "gem: -n/usr/local/bin" >> ~/.gemrc
sudo chown -R $(whoami):admin /usr/local
sudo gem install nokogiri -n/usr/local/bin -v '1.6.3.1' -- --with-opt-include=$(xcrun --show-sdk-path)/usr/include
sudo gem install mechanize
Mechanize requires minimum version 1.6, so Nokogiri 1.6.3.1 will work: https://github.com/sparklemotion/mechanize/blob/master/mechanize.gemspec#L56
For further issues see:
http://www.nokogiri.org/tutorials/installing_nokogiri.html
https://github.com/sparklemotion/nokogiri/issues
https://github.com/sparklemotion/mechanize/issues
I have tried sudo...
1) To verify downloads, install gpgTools.
2) Install rvm (Ruby Version Manager):
$ gpg --keyserver hkp://keys.gnupg.net --recv-keys 409B6B1796C275462A1703113804BB82D39DC0E3
$ \curl -sSL https://get.rvm.io | bash -s stable
2) Use rvm to install your own copy of ruby (DO NOT USE SUDO):
$ rvm install 2.3.1
3) Install all the gems you want into your copy of ruby--error free (DO NOT USE SUDO):
$ gem install mechanize
If you ever use sudo when issuing any of the commands above, chop off one of your fingers. By the time you finish with one hand, you'll get the hang of it.