I have a .rst document containing the following lines...
This example goes over the analysis found the author's paper [Hughes2017]_.
.. [Hughes2017] Hughes, M., Olsen, J., *On the potential of organic Rankine cycles for recovering waste heat from the exhaust gases of a piston aero-engine*, Asia-Pacific International Symposium on Aerospace Technology, Seoul, Korea, 2017.
When I use Sphinx to produce a .html file from this .rst file, the reference comes out as [Hughes20170] (both in text and in the reference list). Could anybody explain why this is?
I found the answer! My question was a little misleading because actually the text above was in the docstring of a module. I was then using automodule in an rst file in my /doc folder to call the docstring of that module and it was appending the 0 to the citation. If I remove the References heading from the docstring and place it instead in the actual rst file it stops appending the 0.
Related
How to insert a cross-reference in a reST/Sphinx page to either a sub-header or anchor in another page in the same documentation set?
The expression "reST/Sphinx" makes the scope of the question unclear. Is it about reStructuredText in general and Sphinx, or only about reStructuredText as used in Sphinx (and not reStructuredText in general)? I'm going to cover both since people using RST are likely to run into both cases at some point:
Sphinx
Besides the domain-specific directives that can be used to link to various entities like classes (:class:) there's the general :ref: directive, documented here. They give this example:
.. _my-reference-label:
Section to cross-reference
--------------------------
This is the text of the section.
It refers to the section itself, see :ref:`my-reference-label`.
Although the general hyperlinking mechanism offered by RST does work in Sphinx, the documentation recommends against using it when using Sphinx:
Using ref is advised over standard reStructuredText links to sections (like Section title_) because it works across files, when section headings are changed, and for all builders that support cross-references.
RST, in General
The tools that convert RST files to HTML do not necessarily have a notion of collection. This is the case for instance if you rely on github to convert RST files to HTML or if you use a command line tool like rst2html. Unfortunately, the various methods to use to get the desired result vary depending on which tool you are using. For instance, if you use rst2html and you want file A.rst to link to a section named "Section" in file other.rst and you want the final HTML to work in a browser, then A.rst would contain:
`This <other.html#section>`__ is a reference to a section in another
file, which works with ``rst2html``. Unfortunately, it does not work
when the HTML is generated through github.
You have to link to the final HTML file and you have to know what the id given to the section will be. If you want to do the same for a file served through github:
`This <other.rst#section>`__ is a reference to a section in another
file, which works on github. Unfortunately, it does not work when you
use ``rst2html``.
Here too you need to know the id given to the section. However, you link to the RST file because it is only upon accessing the RST file that the HTML is created. (At the time of writing this answer, accessing the HTML directly is not allowed.)
A complete example is available here.
New, better answer for 2016!
The autosection extension lets you do this easily.
=============
Some Document
=============
Internal Headline
=================
then, later...
===============
Some Other Doc
===============
A link- :ref:`Internal Headline`
This extension is built-in, so all you need is to edit conf.py
extensions = [
.
. other
. extensions
. already
. listed
.
'sphinx.ext.autosectionlabel',
]
The only thing you have to be careful of is that now you can't duplicate internal headlines across the doc collection. (Worth it.)
Example:
Hey, read the :ref:`Installation:Homebrew` section.
where Homebrew is a section inside a different document named Installation.rst.
This uses the autosection feature, so will need to edit config.py with the following:
extensions = [
'sphinx.ext.autosectionlabel'
]
autosectionlabel_prefix_document = True
In Sphinx 3.0.3 the only solution that worked for me is :any: (see https://www.sphinx-doc.org/en/1.5/markup/inline.html#cross-referencing-anything).
Suppose, one document has such a section:
.. _my-section:
My Section
----------
Lorem ipsum blablabla
Then another document can have the following fragment to create a link:
See :any:`my-section` for the details
I was struggling to make this work and i found out that the actual notation is :ref:'{dir-path}/Installation:Homebrew' where {dir-path} is the relative path to Installation.rst from where config.py exists
Adding description of behavior that was confusing to me.
Section titles must be referenced with the file name (overview here) in front of it:
overview.rst:
************
API Overview
************
index.rst:
:ref:`overview:API Overview`
However, when referencing links, the file name (constants here) must not be there:
constants.rst:
.. _section-constants:
*******************
Enums and Constants
*******************
api.rst:
:ref:`section-constants`
Also, for this to work, one must enable extension 'autosectionlabel':
conf.py:
extensions = [
...
"sphinx.ext.autosectionlabel"
]
I am writing lots of Sphinx/RestructuredText and this includes Sequence Diagrams using PlantUML. I have lots of text that I am reusing, so to make things cleaner, I created a definitions.iuml file. In this file, I can create named text references (via !startsub/!endsub blocks) that allows me to reference them in several different Sequence Diagrams. Change it once in the source location, and they all change. Perfect.
My problem is how to use these references outside of Sequence Diagrams? I use the exact same code (!includesub ../defintions.iuml!NAMED-REFERENCE) in the .rst file, and when I make docx/pdf, I see that link, I don't see the text that it is referencing. To make things worse, Google has like no documentation or search results on this. Queries of includesub, startsub, endsub +sphinx come back with nothing.
Help me obiwan kenobi.
I found the answer, which only resulted in more questions haha. Anyway, one thing at a time:
To create reference variables in your text document, use rst_prolog or rst_epilog in your Conf.py file. Why there are 2 commands that serve the same purpose, I dont know.
rst_prolog = """
.. |Variable1| replace:: Monday
.. |Variable2| replace:: Tuesday
"""
Now whenever you write |Variable1| in your text, the document will generate Monday.
The problem with the above is that its just for short words/phrases. You can't use it for code blocks, or anything that is more than one line. To reference in Code Blocks:
Create a new .rst file with the code you want to display. Best practice is to create a Code folder and place them all in there.
Further best practice is to stop using the '.. code block::' and instead use '.. parsed-literal::'. The output is the exact same, but parsed-literal allows you to use conf.py variables and ..codeblock:: doesn't.
So in this .rst file, first line is .. parsed-literal:: and all the text below it is the code you want to reference
In the original document that you wanted this code, type:
<4 spaces indent>.. include:: <Folder/File.rst>
Generate your document, and notice how the code is now being reference. You can include this reference all throughout your document.
I will soon be creating a new thread, this time asking how the text body and sequence diagrams can use the same reference. Currently, all text needs one reference, all sequences need another reference, and now we have double updates. Not ideal
How to insert a cross-reference in a reST/Sphinx page to either a sub-header or anchor in another page in the same documentation set?
The expression "reST/Sphinx" makes the scope of the question unclear. Is it about reStructuredText in general and Sphinx, or only about reStructuredText as used in Sphinx (and not reStructuredText in general)? I'm going to cover both since people using RST are likely to run into both cases at some point:
Sphinx
Besides the domain-specific directives that can be used to link to various entities like classes (:class:) there's the general :ref: directive, documented here. They give this example:
.. _my-reference-label:
Section to cross-reference
--------------------------
This is the text of the section.
It refers to the section itself, see :ref:`my-reference-label`.
Although the general hyperlinking mechanism offered by RST does work in Sphinx, the documentation recommends against using it when using Sphinx:
Using ref is advised over standard reStructuredText links to sections (like Section title_) because it works across files, when section headings are changed, and for all builders that support cross-references.
RST, in General
The tools that convert RST files to HTML do not necessarily have a notion of collection. This is the case for instance if you rely on github to convert RST files to HTML or if you use a command line tool like rst2html. Unfortunately, the various methods to use to get the desired result vary depending on which tool you are using. For instance, if you use rst2html and you want file A.rst to link to a section named "Section" in file other.rst and you want the final HTML to work in a browser, then A.rst would contain:
`This <other.html#section>`__ is a reference to a section in another
file, which works with ``rst2html``. Unfortunately, it does not work
when the HTML is generated through github.
You have to link to the final HTML file and you have to know what the id given to the section will be. If you want to do the same for a file served through github:
`This <other.rst#section>`__ is a reference to a section in another
file, which works on github. Unfortunately, it does not work when you
use ``rst2html``.
Here too you need to know the id given to the section. However, you link to the RST file because it is only upon accessing the RST file that the HTML is created. (At the time of writing this answer, accessing the HTML directly is not allowed.)
A complete example is available here.
New, better answer for 2016!
The autosection extension lets you do this easily.
=============
Some Document
=============
Internal Headline
=================
then, later...
===============
Some Other Doc
===============
A link- :ref:`Internal Headline`
This extension is built-in, so all you need is to edit conf.py
extensions = [
.
. other
. extensions
. already
. listed
.
'sphinx.ext.autosectionlabel',
]
The only thing you have to be careful of is that now you can't duplicate internal headlines across the doc collection. (Worth it.)
Example:
Hey, read the :ref:`Installation:Homebrew` section.
where Homebrew is a section inside a different document named Installation.rst.
This uses the autosection feature, so will need to edit config.py with the following:
extensions = [
'sphinx.ext.autosectionlabel'
]
autosectionlabel_prefix_document = True
In Sphinx 3.0.3 the only solution that worked for me is :any: (see https://www.sphinx-doc.org/en/1.5/markup/inline.html#cross-referencing-anything).
Suppose, one document has such a section:
.. _my-section:
My Section
----------
Lorem ipsum blablabla
Then another document can have the following fragment to create a link:
See :any:`my-section` for the details
I was struggling to make this work and i found out that the actual notation is :ref:'{dir-path}/Installation:Homebrew' where {dir-path} is the relative path to Installation.rst from where config.py exists
Adding description of behavior that was confusing to me.
Section titles must be referenced with the file name (overview here) in front of it:
overview.rst:
************
API Overview
************
index.rst:
:ref:`overview:API Overview`
However, when referencing links, the file name (constants here) must not be there:
constants.rst:
.. _section-constants:
*******************
Enums and Constants
*******************
api.rst:
:ref:`section-constants`
Also, for this to work, one must enable extension 'autosectionlabel':
conf.py:
extensions = [
...
"sphinx.ext.autosectionlabel"
]
I am trying to generate a hierachical documentation in Sphinx.
I would like the following structure:
Introduction
Quick start
Weather API (one general page + 2 subpages)
Temperature
Humidity
Sky API (one general page + 3 subpages)
Planets
Stars
Satellites
Future API (one page is enough for this)
Assuming that there is one file per each line in the above TOC what should I do to achieve this?
I tried to include one or more .. toctree:: directives into the top index file, but the results seem to be quite random.
Create a directory and file structure that aligns with the following toctree entries, but the actual file names are appended with the .rst suffix.
.. toctree::
introduction
quick_start
weather_api/index
weather_api/temperature
weather_api/humidity
sky_api/index
sky_api/planets
sky_api/stars
sky_api/satellites
future_api/index
We do this in a part of Pyramid's documentation, although we also globbing because the order of the files is not important. Your order appears to have importance, so listing them in your desired order is necessary.
How to insert a cross-reference in a reST/Sphinx page to either a sub-header or anchor in another page in the same documentation set?
The expression "reST/Sphinx" makes the scope of the question unclear. Is it about reStructuredText in general and Sphinx, or only about reStructuredText as used in Sphinx (and not reStructuredText in general)? I'm going to cover both since people using RST are likely to run into both cases at some point:
Sphinx
Besides the domain-specific directives that can be used to link to various entities like classes (:class:) there's the general :ref: directive, documented here. They give this example:
.. _my-reference-label:
Section to cross-reference
--------------------------
This is the text of the section.
It refers to the section itself, see :ref:`my-reference-label`.
Although the general hyperlinking mechanism offered by RST does work in Sphinx, the documentation recommends against using it when using Sphinx:
Using ref is advised over standard reStructuredText links to sections (like Section title_) because it works across files, when section headings are changed, and for all builders that support cross-references.
RST, in General
The tools that convert RST files to HTML do not necessarily have a notion of collection. This is the case for instance if you rely on github to convert RST files to HTML or if you use a command line tool like rst2html. Unfortunately, the various methods to use to get the desired result vary depending on which tool you are using. For instance, if you use rst2html and you want file A.rst to link to a section named "Section" in file other.rst and you want the final HTML to work in a browser, then A.rst would contain:
`This <other.html#section>`__ is a reference to a section in another
file, which works with ``rst2html``. Unfortunately, it does not work
when the HTML is generated through github.
You have to link to the final HTML file and you have to know what the id given to the section will be. If you want to do the same for a file served through github:
`This <other.rst#section>`__ is a reference to a section in another
file, which works on github. Unfortunately, it does not work when you
use ``rst2html``.
Here too you need to know the id given to the section. However, you link to the RST file because it is only upon accessing the RST file that the HTML is created. (At the time of writing this answer, accessing the HTML directly is not allowed.)
A complete example is available here.
New, better answer for 2016!
The autosection extension lets you do this easily.
=============
Some Document
=============
Internal Headline
=================
then, later...
===============
Some Other Doc
===============
A link- :ref:`Internal Headline`
This extension is built-in, so all you need is to edit conf.py
extensions = [
.
. other
. extensions
. already
. listed
.
'sphinx.ext.autosectionlabel',
]
The only thing you have to be careful of is that now you can't duplicate internal headlines across the doc collection. (Worth it.)
Example:
Hey, read the :ref:`Installation:Homebrew` section.
where Homebrew is a section inside a different document named Installation.rst.
This uses the autosection feature, so will need to edit config.py with the following:
extensions = [
'sphinx.ext.autosectionlabel'
]
autosectionlabel_prefix_document = True
In Sphinx 3.0.3 the only solution that worked for me is :any: (see https://www.sphinx-doc.org/en/1.5/markup/inline.html#cross-referencing-anything).
Suppose, one document has such a section:
.. _my-section:
My Section
----------
Lorem ipsum blablabla
Then another document can have the following fragment to create a link:
See :any:`my-section` for the details
I was struggling to make this work and i found out that the actual notation is :ref:'{dir-path}/Installation:Homebrew' where {dir-path} is the relative path to Installation.rst from where config.py exists
Adding description of behavior that was confusing to me.
Section titles must be referenced with the file name (overview here) in front of it:
overview.rst:
************
API Overview
************
index.rst:
:ref:`overview:API Overview`
However, when referencing links, the file name (constants here) must not be there:
constants.rst:
.. _section-constants:
*******************
Enums and Constants
*******************
api.rst:
:ref:`section-constants`
Also, for this to work, one must enable extension 'autosectionlabel':
conf.py:
extensions = [
...
"sphinx.ext.autosectionlabel"
]