Unable to insert kernel module: Unknown symbol net_namespace_list - linux-kernel

I'm writing a kernel module that lists the network namespaces using the for_each_net and have written the following snippet which compiles fine:
rtnl_lock();
for_each_net(net)
printk("network ns: %p\n", net);
rtnl_unlock();
However when I try to insert the kernel module i get the following error:
insmod: ERROR: could not insert module kerNotification.ko: Unknown symbol in module
The dmesg gives the additional error information:
[3561461.418499] kerNotification: Unknown symbol net_namespace_list (err 0)
The kallsyms shows that it has the symbol of this kernel function:
[josh#dev kernel_prog(keystone_admin)]# cat /proc/kallsyms | grep net_namespace_list
ffffffff81a203e0 R __ksymtab_net_namespace_list
ffffffff81a32bc0 r __kcrctab_net_namespace_list
ffffffff81a55452 r __kstrtab_net_namespace_list
ffffffff81b6b000 D net_namespace_lis
The Module.symvers is included in the makefile as KBUILD_EXTRA_SYMBOLS. Here is the Makefile:
obj-m += kerNotification.o
SYMBOLA=/usr/src/kernels/4.4.57-1.el7.elrepo.x86_64/Module.symvers
KBUILD_EXTRA_SYMBOLS= $(SYMBOLA)
all:
make -C /lib/modules/$(shell uname -r)/build $(KBUILD_EXTRA_SYMBOLS) M=$(PWD) modules
clean:
make -C /lib/modules/$(shell uname -r)/build M=$(PWD) clean
Here is the complete logs when the make file is built with V=1:
make -C /lib/modules/4.4.57-1.el7.elrepo.x86_64/build /usr/src/kernels/4.4.57-1.el7.elrepo.x86_64/Module.symvers M=/home/cmmdocker/kernel_prog modules
make[1]: Entering directory `/usr/src/kernels/4.4.57-1.el7.elrepo.x86_64'
test -e include/generated/autoconf.h -a -e include/config/auto.conf || ( \
echo >&2; \
echo >&2 " ERROR: Kernel configuration is invalid."; \
echo >&2 " include/generated/autoconf.h or include/config/auto.conf are missing.";\
echo >&2 " Run 'make oldconfig && make prepare' on kernel src to fix it."; \
echo >&2 ; \
/bin/false)
make[1]: Nothing to be done for `/usr/src/kernels/4.4.57-1.el7.elrepo.x86_64/Module.symvers'.
mkdir -p /home/cmmdocker/kernel_prog/.tmp_versions ; rm -f /home/cmmdocker/kernel_prog/.tmp_versions/*
make -f ./scripts/Makefile.build obj=/home/cmmdocker/kernel_prog
rm -f /home/cmmdocker/kernel_prog/built-in.o; ar rcsD /home/cmmdocker/kernel_prog/built-in.o
gcc -Wp,-MD,/home/cmmdocker/kernel_prog/.kerNotification.o.d -nostdinc -isystem /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include -I./arch/x86/include -Iarch/x86/include/generated/uapi -Iarch/x86/include/generated -Iinclude -I./arch/x86/include/uapi -Iarch/x86/include/generated/uapi -I./include/uapi -Iinclude/generated/uapi -include ./include/linux/kconfig.h -D__KERNEL__ -Wall -Wundef -Wstrict-prototypes -Wno-trigraphs -fno-strict-aliasing -fno-common -Werror-implicit-function-declaration -Wno-format-security -std=gnu89 -fno-PIE -mno-sse -mno-mmx -mno-sse2 -mno-3dnow -mno-avx -m64 -falign-jumps=1 -falign-loops=1 -mno-80387 -mno-fp-ret-in-387 -mpreferred-stack-boundary=3 -mtune=generic -mno-red-zone -mcmodel=kernel -funit-at-a-time -maccumulate-outgoing-args -DCONFIG_AS_CFI=1 -DCONFIG_AS_CFI_SIGNAL_FRAME=1 -DCONFIG_AS_CFI_SECTIONS=1 -DCONFIG_AS_FXSAVEQ=1 -DCONFIG_AS_SSSE3=1 -DCONFIG_AS_CRC32=1 -DCONFIG_AS_AVX=1 -DCONFIG_AS_AVX2=1 -DCONFIG_AS_SHA1_NI=1 -DCONFIG_AS_SHA256_NI=1 -pipe -Wno-sign-compare -fno-asynchronous-unwind-tables -fno-delete-null-pointer-checks -Wno-maybe-uninitialized -O2 --param=allow-store-data-races=0 -Wframe-larger-than=2048 -fstack-protector-strong -Wno-unused-but-set-variable -fno-omit-frame-pointer -fno-optimize-sibling-calls -fno-var-tracking-assignments -g -pg -mfentry -DCC_USING_FENTRY -fno-inline-functions-called-once -Wdeclaration-after-statement -Wno-pointer-sign -fno-strict-overflow -fconserve-stack -Werror=implicit-int -Werror=strict-prototypes -DCC_HAVE_ASM_GOTO -DMODULE -D"KBUILD_STR(s)=#s" -D"KBUILD_BASENAME=KBUILD_STR(kerNotification)" -D"KBUILD_MODNAME=KBUILD_STR(kerNotification)" -c -o /home/cmmdocker/kernel_prog/.tmp_kerNotification.o /home/cmmdocker/kernel_prog/kerNotification.c
/home/cmmdocker/kernel_prog/kerNotification.c: In function ‘kerNotification_init’:
/home/cmmdocker/kernel_prog/kerNotification.c:37:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement]
struct net *net;
^
if [ "-pg" = "-pg" ]; then if [ /home/cmmdocker/kernel_prog/kerNotification.o != "scripts/mod/empty.o" ]; then ./scripts/recordmcount "/home/cmmdocker/kernel_prog/kerNotification.o"; fi; fi;
(cat /dev/null; echo kernel//home/cmmdocker/kernel_prog/kerNotification.ko;) > /home/cmmdocker/kernel_prog/modules.order
make -f ./scripts/Makefile.modpost
find /home/cmmdocker/kernel_prog/.tmp_versions -name '*.mod' | xargs -r grep -h '\.ko$' | sort -u | sed 's/\.ko$/.o/' | scripts/mod/modpost -m -a -i ./Module.symvers -I /home/cmmdocker/kernel_prog/Module.symvers -e /usr/src/kernels/4.4.57-1.el7.elrepo.x86_64/Module.symvers -o /home/cmmdocker/kernel_prog/Module.symvers -w -s -T -
gcc -Wp,-MD,/home/cmmdocker/kernel_prog/.kerNotification.mod.o.d -nostdinc -isystem /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include -I./arch/x86/include -Iarch/x86/include/generated/uapi -Iarch/x86/include/generated -Iinclude -I./arch/x86/include/uapi -Iarch/x86/include/generated/uapi -I./include/uapi -Iinclude/generated/uapi -include ./include/linux/kconfig.h -D__KERNEL__ -Wall -Wundef -Wstrict-prototypes -Wno-trigraphs -fno-strict-aliasing -fno-common -Werror-implicit-function-declaration -Wno-format-security -std=gnu89 -fno-PIE -mno-sse -mno-mmx -mno-sse2 -mno-3dnow -mno-avx -m64 -falign-jumps=1 -falign-loops=1 -mno-80387 -mno-fp-ret-in-387 -mpreferred-stack-boundary=3 -mtune=generic -mno-red-zone -mcmodel=kernel -funit-at-a-time -maccumulate-outgoing-args -DCONFIG_AS_CFI=1 -DCONFIG_AS_CFI_SIGNAL_FRAME=1 -DCONFIG_AS_CFI_SECTIONS=1 -DCONFIG_AS_FXSAVEQ=1 -DCONFIG_AS_SSSE3=1 -DCONFIG_AS_CRC32=1 -DCONFIG_AS_AVX=1 -DCONFIG_AS_AVX2=1 -DCONFIG_AS_SHA1_NI=1 -DCONFIG_AS_SHA256_NI=1 -pipe -Wno-sign-compare -fno-asynchronous-unwind-tables -fno-delete-null-pointer-checks -Wno-maybe-uninitialized -O2 --param=allow-store-data-races=0 -Wframe-larger-than=2048 -fstack-protector-strong -Wno-unused-but-set-variable -fno-omit-frame-pointer -fno-optimize-sibling-calls -fno-var-tracking-assignments -g -pg -mfentry -DCC_USING_FENTRY -fno-inline-functions-called-once -Wdeclaration-after-statement -Wno-pointer-sign -fno-strict-overflow -fconserve-stack -Werror=implicit-int -Werror=strict-prototypes -DCC_HAVE_ASM_GOTO -D"KBUILD_STR(s)=#s" -D"KBUILD_BASENAME=KBUILD_STR(kerNotification.mod)" -D"KBUILD_MODNAME=KBUILD_STR(kerNotification)" -DMODULE -c -o /home/cmmdocker/kernel_prog/kerNotification.mod.o /home/cmmdocker/kernel_prog/kerNotification.mod.c
ld -r -m elf_x86_64 -T ./scripts/module-common.lds --build-id -o /home/cmmdocker/kernel_prog/kerNotification.ko /home/cmmdocker/kernel_prog/kerNotification.o /home/cmmdocker/kernel_prog/kerNotification.mod.o
make[1]: Leaving directory `/usr/src/kernels/4.4.57-1.el7.elrepo.x86_64'
Any idea how to fix this?

Issue was missing license. Below was added to get the expected result:
MODULE_LICENSE("GPL");
Referred the following answer from another query on stackoverflow for this: unknown-symbol-class-create-err-0

insmod: ERROR: could not insert module kerNotification.ko: Unknown
symbol in module
You get the above error because the net_namespace_list is missing in the kernel. So you need to make sure to insert the module which it is defined. looking at the source code its declared in net_namespace.c and looking at the Makefile it will when CONFIG_NET is enabled. Also when you have built your kernel image the System.map file should tell you if its declared in the kernel image which you have built, something like below:
cat System.map | grep net_namespace_list
8041a888 r __ksymtab_net_namespace_list
8042b80c r __kstrtab_net_namespace_list
80464c08 D net_namespace_list

Related

Linux kernel: can't build module with non-retpoline compiler

OS - RedHat 8.5, kernel 4.18.0-348.20.1.el8_5.x86_64, gcc-8.5.0
I have installed kernel-devel and kernel-headers, and tried to build a very simple kernel module (just a pair of printk()).
Makefile:
obj-m += test_mod.o
MSRC ?= $(PWD)
KDIR ?= /lib/modules/`uname -r`/build/
all:
make -C $(KDIR) M=$(MSRC) modules
clean:
make -C $(KDIR) M=$(MSRC) clean
However I'm getting error:
% make V=1
make -C /lib/modules/`uname -r`/build M= modules
make[1]: Entering directory '/usr/src/kernels/4.18.0-348.20.1.el8_5.x86_64'
arch/x86/Makefile:249: *** You are building kernel with non-retpoline compiler, please update your compiler.. Stop.
make[1]: Leaving directory '/usr/src/kernels/4.18.0-348.20.1.el8_5.x86_64'
make: *** [Makefile:4: all] Error 2
%
Do I have to upgrade to a new compiler, if so which compiler version is needed? man gcc on my machine (RHEL8.5) says that -mindirect-branch= option is supported, and I believe this is the one enabling retpoline.
Should it be possible to disable retpoline support in the kernel? (however I would not like to rebuild the kernel if possible).
Thanks!
EDIT
I disabled retpoline as suggested by 0andriy via grub configuration file, (cat /proc/cmdline shows spectre_v2=off):
% grub2-editenv - set kernelopts=root=/dev/mapper/rhel_ps3cat5505k1-root ro crashkernel=auto resume=/dev/mapper/rhel_ps3cat5505k1-swap rd.lvm.lv=rhel_ps3cat5505k1/root rd.lvm.lv=rhel_ps3cat5505k1/swap rhgb quiet spectre_v2=off
% reboot
However the build still fails:
% make V=1
make -C /lib/modules/`uname -r`/build/ M=/home/mrv/tmp modules
make[1]: Entering directory '/usr/src/kernels/4.18.0-348.20.1.el8_5.x86_64'
test -e include/generated/autoconf.h -a -e include/config/auto.conf || ( \
echo >&2; \
echo >&2 " ERROR: Kernel configuration is invalid."; \
echo >&2 " include/generated/autoconf.h or include/config/auto.conf are missing.";\
echo >&2 " Run 'make oldconfig && make prepare' on kernel src to fix it."; \
echo >&2 ; \
/bin/false)
mkdir -p /home/mrv/tmp/.tmp_versions ; rm -f /home/mrv/tmp/.tmp_versions/*
make -f ./scripts/Makefile.build obj=/home/mrv/tmp
(cat /dev/null; echo kernel//home/mrv/tmp/test_mod.ko;) > /home/mrv/tmp/modules.order
gcc -Wp,-MD,/home/mrv/tmp/.test_mod.o.d -nostdinc -isystem /usr/lib/gcc/x86_64-redhat-linux/8/include -I./arch/x86/include -I./arch/x86/include/generated -I./include/drm-backport -I./include -I./arch/x86/include/uapi -I./arch/x86/include/generated/uapi -I./include/uapi -I./include/generated/uapi -include ./include/linux/kconfig.h -include ./include/linux/compiler_types.h -D__KERNEL__ -Wall -Wundef -Wstrict-prototypes -Wno-trigraphs -fno-strict-aliasing -fno-common -fshort-wchar -Werror-implicit-function-declaration -Wno-format-security -std=gnu89 -fno-PIE -DCC_HAVE_ASM_GOTO -mno-sse -mno-mmx -mno-sse2 -mno-3dnow -mno-avx -m64 -falign-jumps=1 -falign-loops=1 -mno-80387 -mno-fp-ret-in-387 -mpreferred-stack-boundary=3 -mskip-rax-setup -mtune=generic -mno-red-zone -mcmodel=kernel -funit-at-a-time -DCONFIG_AS_CFI=1 -DCONFIG_AS_CFI_SIGNAL_FRAME=1 -DCONFIG_AS_CFI_SECTIONS=1 -DCONFIG_AS_FXSAVEQ=1 -DCONFIG_AS_SSSE3=1 -DCONFIG_AS_CRC32=1 -DCONFIG_AS_AVX=1 -DCONFIG_AS_AVX2=1 -DCONFIG_AS_AVX512=1 -DCONFIG_AS_SHA1_NI=1 -DCONFIG_AS_SHA256_NI=1 -DCONFIG_TPAUSE=1 -pipe -Wno-sign-compare -fno-asynchronous-unwind-tables -mindirect-branch=thunk-extern -mindirect-branch-register -fno-jump-tables -fno-delete-null-pointer-checks -Wno-frame-address -Wno-format-truncation -Wno-format-overflow -Wno-int-in-bool-context -O2 --param=allow-store-data-races=0 -Wframe-larger-than=2048 -fstack-protector-strong -Wno-unused-but-set-variable -Wno-unused-const-variable -g -gdwarf-4 -pg -mrecord-mcount -mfentry -DCC_USING_FENTRY -fno-inline-functions-called-once -Wdeclaration-after-statement -Wno-pointer-sign -Wno-stringop-truncation -fno-strict-overflow -fno-merge-all-constants -fmerge-constants -fno-stack-check -fconserve-stack -Werror=implicit-int -Werror=strict-prototypes -Werror=date-time -Werror=incompatible-pointer-types -Werror=designated-init -fmacro-prefix-map=./= -Wno-packed-not-aligned -DMODULE -DKBUILD_BASENAME='"test_mod"' -DKBUILD_MODNAME='"test_mod"' -c -o /home/mrv/tmp/.tmp_test_mod.o /home/mrv/tmp/test_mod.c
In file included from ./include/linux/module.h:18,
from /home/mrv/tmp/test_mod.c:1:
./include/linux/moduleparam.h:22:1: error: expected ‘,’ or ‘;’ before ‘static’
static const char __UNIQUE_ID(name)[] \
^~~~~~
./include/linux/module.h:158:32: note: in expansion of macro ‘__MODULE_INFO’
#define MODULE_INFO(tag, info) __MODULE_INFO(tag, tag, info)
^~~~~~~~~~~~~
./include/linux/module.h:196:34: note: in expansion of macro ‘MODULE_INFO’
#define MODULE_LICENSE(_license) MODULE_INFO(license, _license)
^~~~~~~~~~~
/home/mrv/tmp/test_mod.c:19:1: note: in expansion of macro ‘MODULE_LICENSE’
MODULE_LICENSE("GPL")
^~~~~~~~~~~~~~
make[2]: *** [scripts/Makefile.build:322: /home/mrv/tmp/test_mod.o] Error 1
make[1]: *** [Makefile:1571: _module_/home/mrv/tmp] Error 2
make[1]: Leaving directory '/usr/src/kernels/4.18.0-348.20.1.el8_5.x86_64'
make: *** [Makefile:6: all] Error 2
%
So, running 'make oldconfig && make prepare' in kernel sources directory /usr/src/kernels/4.18.0-348.20.1.el8_5.x86_64 results in failure to locate tools/build/Build.include.
Not sure if RedHat allows to build kernel modules in RHEL8 at all.
EDIT2
Simple kernel module:
#include <linux/module.h>
#include <linux/kernel.h>
static __init int test_init(void)
{
printk("Init module\n");
return 0;
}
static __exit void test_exit(void)
{
printk("Cleanup module\n");
}
module_init(test_init)
module_exit(test_exit)
MODULE_DESCRIPTION("Test module");
MODULE_LICENSE("GPL");

meson setting proper kinker flag in static library

in my project I need to compile a static library, the meson.build for it is the following
# libcustomLog library project.
#
project(
'customLog',
'c',
version : '1.0.0',
default_options : ['warning_level=3']
)
project_description = 'An example shared library'
project_headers = [
'libcustomLog.h'
]
project_source_files = [
'libcustomLog.c',
'libcustomLogGet.c',
'libcustomLogStripe.c'
]
build_args = [
]
# ===================================================================
# ======
# Target
# ======
public_headers = include_directories('../',
'../public'
)
build_args = [
'-DQNXNTO',
'-DQNX_VER=7',
'-DfwPLATFORM_NTO',
'-Wall',
'-Werror',
'-fsigned-char',
'-Wno-char-subscripts',
'-Wno-switch',
'-Wno-parentheses',
'-Wno-pointer-sign',
'-Wredundant-decls',
'-Wmissing-declarations',
'-Wmissing-prototypes',
'-O3',
'-fno-strict-aliasing',
'-std=gnu99',
'-g',
]
project_target = static_library(
meson.project_name(),
project_source_files,
install : true,
c_args : build_args,
gnu_symbol_visibility : 'hidden',
include_directories : public_headers,
)
# =======
# Project
# =======
# Make this library usable as a Meson subproject.
project_dep = declare_dependency(
include_directories: public_headers,
link_with : project_target
)
set_variable(meson.project_name() + '_dep', project_dep)
# Make this library usable from the system's
# package manager.
install_headers(project_headers, subdir : meson.project_name())
pkg_mod = import('pkgconfig')
pkg_mod.generate(
name : meson.project_name(),
filebase : meson.project_name(),
description : project_description,
subdirs : meson.project_name(),
libraries : project_target,
)
the compilation output is
$ meson compile --verbose
Found runner: ['/usr/bin/ninja']
ninja: Entering directory `.'
[1/4] /opt/qnx700/host/linux/x86_64/usr/bin/ntox86_64-gcc -Isrc/mon/libcustomLog.a.p -Isrc/mon -I../../src/mon -Isrc -I../../src -I../../src/public -fvisibility=hidden -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -fPIC -DQNXNTO -DQNX_VER=7 -DfwPLATFORM_NTO -Wall -Werror -fsigned-char -Wno-char-subscripts -Wno-switch -Wno-parentheses -Wno-pointer-sign -Wredundant-decls -Wmissing-declarations -Wmissing-prototypes -O3 -fno-strict-aliasing -std=gnu99 -g -MD -MQ src/mon/libcustomLog.a.p/libcustomLogStripe.c.o -MF src/mon/libcustomLog.a.p/libcustomLogStripe.c.o.d -o src/mon/libcustomLog.a.p/libcustomLogStripe.c.o -c ../../src/mon/libcustomLogStripe.c
[2/4] /opt/qnx700/host/linux/x86_64/usr/bin/ntox86_64-gcc -Isrc/mon/libcustomLog.a.p -Isrc/mon -I../../src/mon -Isrc -I../../src -I../../src/public -fvisibility=hidden -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -fPIC -DQNXNTO -DQNX_VER=7 -DfwPLATFORM_NTO -Wall -Werror -fsigned-char -Wno-char-subscripts -Wno-switch -Wno-parentheses -Wno-pointer-sign -Wredundant-decls -Wmissing-declarations -Wmissing-prototypes -O3 -fno-strict-aliasing -std=gnu99 -g -MD -MQ src/mon/libcustomLog.a.p/libcustomLogGetCode.c.o -MF src/mon/libcustomLog.a.p/libcustomLogGetCode.c.o.d -o src/mon/libcustomLog.a.p/libcustomLogGetCode.c.o -c ../../src/mon/libcustomLogGetCode.c
[3/4] /opt/qnx700/host/linux/x86_64/usr/bin/ntox86_64-gcc -Isrc/mon/libcustomLog.a.p -Isrc/mon -I../../src/mon -Isrc -I../../src -I../../src/public -fvisibility=hidden -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -fPIC -DQNXNTO -DQNX_VER=7 -DfwPLATFORM_NTO -Wall -Werror -fsigned-char -Wno-char-subscripts -Wno-switch -Wno-parentheses -Wno-pointer-sign -Wredundant-decls -Wmissing-declarations -Wmissing-prototypes -O3 -fno-strict-aliasing -std=gnu99 -g -MD -MQ src/mon/libcustomLog.a.p/libcustomLog.c.o -MF src/mon/libcustomLog.a.p/libcustomLog.c.o.d -o src/mon/libcustomLog.a.p/libcustomLog.c.o -c ../../src/mon/libcustomLog.c
[4/4] rm -f src/mon/libcustomLog.a && /opt/qnx700/host/linux/x86_64/usr/bin/ntox86_64-ar csrD src/mon/libcustomLog.a src/mon/libcustomLog.a.p/libcustomLog.c.o src/mon/libcustomLog.a.p/libcustomLogGetCode.c.o src/mon/libcustomLog.a.p/libcustomLogStripe.c.o
now I would change the archive flags
...ntox86_64-ar csrD .....
in
...ntox86_64-ar -ru .....
how can I ovverride the default ones and add the "-ru"
I've tried to modify the meson.build
build_ar_args = [
'-ru'
]
project_target = static_library(
meson.project_name(),
project_source_files,
install : true,
c_args : build_args,
gnu_symbol_visibility : 'hidden',
include_directories : public_headers,
link_args: build_ar_args
)
but the output is the same.

Can't install VisualSFM macOS High Sierra because it requires cairo-x11 which is no longer supported

I am trying to install VisualSFM on my MacBook Pro mid-2015 running High Sierra for a photogrammetry project I am currently working on with a professor. To do the install I am using Dan Monaghan's installer along with this video to do the install;however, when I run the installer, I get this error:
==> make install
Last 15 lines from /Users/Steven/Library/Logs/Homebrew/gtk+/02.make:
libtool: compile: clang -DHAVE_CONFIG_H -I. -I../.. - DG_LOG_DOMAIN=\"Gdk\" -DGDK_COMPILATION -I../.. -I../../gdk -I../../gdk -DG_DISABLE_CAST_CHECKS -DDISABLE_VISIBILITY -D_REENTRANT -I/usr/local/Cellar/pcre/8.42/include -I/usr/local/Cellar/glib/2.56.1/include/gio-unix-2.0/ -I/usr/local/Cellar/glib/2.56.1/include/glib-2.0 -I/usr/local/Cellar/glib/2.56.1/lib/glib-2.0/include -I/usr/local/opt/gettext/include -I/usr/local/Cellar/libpng/1.6.34/include/libpng16 -I/usr/local/Cellar/gdk-pixbuf/2.36.12/include/gdk-pixbuf-2.0 -I/usr/local/opt/freetype/include/freetype2 -I/usr/local/Cellar/fontconfig/2.13.0/include -I/usr/local/Cellar/pixman/0.34.0_1/include/pixman-1 -I/usr/local/Cellar/cairo/1.14.12/include/cairo -I/usr/local/Cellar/fribidi/1.0.4/include/fribidi -I/usr/local/Cellar/graphite2/1.3.11/include -I/usr/local/Cellar/harfbuzz/1.8.0/include/harfbuzz -I/usr/local/Cellar/pango/1.42.1/include/pango-1.0 -I/opt/X11/include -I/opt/X11/include/cairo -I/opt/X11/include -DG_DISABLE_SINGLE_INCLUDES -DATK_DISABLE_SINGLE_INCLUDES -DGDK_PIXBUF_DISABLE_SINGLE_INCLUDES -DGTK_DISABLE_SINGLE_INCLUDES -I/opt/X11/include -g -O2 -Wall -c gdkcursor-x11.c -fno-common -DPIC -o .libs/gdkcursor-x11.o
libtool: compile: clang -DHAVE_CONFIG_H -I. -I../.. -DG_LOG_DOMAIN=\"Gdk\" -DGDK_COMPILATION -I../.. -I../../gdk -I../../gdk -DG_DISABLE_CAST_CHECKS -DDISABLE_VISIBILITY -D_REENTRANT -I/usr/local/Cellar/pcre/8.42/include -I/usr/local/Cellar/glib/2.56.1/include/gio-unix-2.0/ -I/usr/local/Cellar/glib/2.56.1/include/glib-2.0 -I/usr/local/Cellar/glib/2.56.1/lib/glib-2.0/include -I/usr/local/opt/gettext/include -I/usr/local/Cellar/libpng/1.6.34/include/libpng16 -I/usr/local/Cellar/gdk-pixbuf/2.36.12/include/gdk-pixbuf-2.0 -I/usr/local/opt/freetype/include/freetype2 -I/usr/local/Cellar/fontconfig/2.13.0/include -I/usr/local/Cellar/pixman/0.34.0_1/include/pixman-1 -I/usr/local/Cellar/cairo/1.14.12/include/cairo -I/usr/local/Cellar/fribidi/1.0.4/include/fribidi -I/usr/local/Cellar/graphite2/1.3.11/include -I/usr/local/Cellar/harfbuzz/1.8.0/include/harfbuzz -I/usr/local/Cellar/pango/1.42.1/include/pango-1.0 -I/opt/X11/include -I/opt/X11/include/cairo -I/opt/X11/include -DG_DISABLE_SINGLE_INCLUDES -DATK_DISABLE_SINGLE_INCLUDES -DGDK_PIXBUF_DISABLE_SINGLE_INCLUDES -DGTK_DISABLE_SINGLE_INCLUDES -I/opt/X11/include -g -O2 -Wall -c gdkapplaunchcontext-x11.c -fno-common -DPIC -o .libs/gdkapplaunchcontext-x11.o
libtool: compile: clang -DHAVE_CONFIG_H -I. -I../.. -DG_LOG_DOMAIN=\"Gdk\" -DGDK_COMPILATION -I../.. -I../../gdk -I../../gdk -DG_DISABLE_CAST_CHECKS -DDISABLE_VISIBILITY -D_REENTRANT -I/usr/local/Cellar/pcre/8.42/include -I/usr/local/Cellar/glib/2.56.1/include/gio-unix-2.0/ -I/usr/local/Cellar/glib/2.56.1/include/glib-2.0 -I/usr/local/Cellar/glib/2.56.1/lib/glib-2.0/include -I/usr/local/opt/gettext/include -I/usr/local/Cellar/libpng/1.6.34/include/libpng16 -I/usr/local/Cellar/gdk-pixbuf/2.36.12/include/gdk-pixbuf-2.0 -I/usr/local/opt/freetype/include/freetype2 -I/usr/local/Cellar/fontconfig/2.13.0/include -I/usr/local/Cellar/pixman/0.34.0_1/include/pixman-1 -I/usr/local/Cellar/cairo/1.14.12/include/cairo -I/usr/local/Cellar/fribidi/1.0.4/include/fribidi -I/usr/local/Cellar/graphite2/1.3.11/include -I/usr/local/Cellar/harfbuzz/1.8.0/include/harfbuzz -I/usr/local/Cellar/pango/1.42.1/include/pango-1.0 -I/opt/X11/include -I/opt/X11/include/cairo -I/opt/X11/include -DG_DISABLE_SINGLE_INCLUDES -DATK_DISABLE_SINGLE_INCLUDES -DGDK_PIXBUF_DISABLE_SINGLE_INCLUDES -DGTK_DISABLE_SINGLE_INCLUDES -I/opt/X11/include -g -O2 -Wall -c gdkdisplay-x11.c -fno-common -DPIC -o .libs/gdkdisplay-x11.o
libtool: compile: clang -DHAVE_CONFIG_H -I. -I../.. -DG_LOG_DOMAIN=\"Gdk\" -DGDK_COMPILATION -I../.. -I../../gdk -I../../gdk -DG_DISABLE_CAST_CHECKS -DDISABLE_VISIBILITY -D_REENTRANT -I/usr/local/Cellar/pcre/8.42/include -I/usr/local/Cellar/glib/2.56.1/include/gio-unix-2.0/ -I/usr/local/Cellar/glib/2.56.1/include/glib-2.0 -I/usr/local/Cellar/glib/2.56.1/lib/glib-2.0/include -I/usr/local/opt/gettext/include -I/usr/local/Cellar/libpng/1.6.34/include/libpng16 -I/usr/local/Cellar/gdk-pixbuf/2.36.12/include/gdk-pixbuf-2.0 -I/usr/local/opt/freetype/include/freetype2 -I/usr/local/Cellar/fontconfig/2.13.0/include -I/usr/local/Cellar/pixman/0.34.0_1/include/pixman-1 -I/usr/local/Cellar/cairo/1.14.12/include/cairo -I/usr/local/Cellar/fribidi/1.0.4/include/fribidi -I/usr/local/Cellar/graphite2/1.3.11/include -I/usr/local/Cellar/harfbuzz/1.8.0/include/harfbuzz -I/usr/local/Cellar/pango/1.42.1/include/pango-1.0 -I/opt/X11/include -I/opt/X11/include/cairo -I/opt/X11/include -DG_DISABLE_SINGLE_INCLUDES -DATK_DISABLE_SINGLE_INCLUDES -DGDK_PIXBUF_DISABLE_SINGLE_INCLUDES -DGTK_DISABLE_SINGLE_INCLUDES -I/opt/X11/include -g -O2 -Wall -c gdkdrawable-x11.c -fno-common -DPIC -o .libs/gdkdrawable-x11.o
libtool: compile: clang -DHAVE_CONFIG_H -I. -I../.. -DG_LOG_DOMAIN=\"Gdk\" -DGDK_COMPILATION -I../.. -I../../gdk -I../../gdk -DG_DISABLE_CAST_CHECKS -DDISABLE_VISIBILITY -D_REENTRANT -I/usr/local/Cellar/pcre/8.42/include -I/usr/local/Cellar/glib/2.56.1/include/gio-unix-2.0/ -I/usr/local/Cellar/glib/2.56.1/include/glib-2.0 -I/usr/local/Cellar/glib/2.56.1/lib/glib-2.0/include -I/usr/local/opt/gettext/include -I/usr/local/Cellar/libpng/1.6.34/include/libpng16 -I/usr/local/Cellar/gdk-pixbuf/2.36.12/include/gdk-pixbuf-2.0 -I/usr/local/opt/freetype/include/freetype2 -I/usr/local/Cellar/fontconfig/2.13.0/include -I/usr/local/Cellar/pixman/0.34.0_1/include/pixman-1 -I/usr/local/Cellar/cairo/1.14.12/include/cairo -I/usr/local/Cellar/fribidi/1.0.4/include/fribidi -I/usr/local/Cellar/graphite2/1.3.11/include -I/usr/local/Cellar/harfbuzz/1.8.0/include/harfbuzz -I/usr/local/Cellar/pango/1.42.1/include/pango-1.0 -I/opt/X11/include -I/opt/X11/include/cairo -I/opt/X11/include -DG_DISABLE_SINGLE_INCLUDES -DATK_DISABLE_SINGLE_INCLUDES -DGDK_PIXBUF_DISABLE_SINGLE_INCLUDES -DGTK_DISABLE_SINGLE_INCLUDES -I/opt/X11/include -g -O2 -Wall -c gdkdnd-x11.c -fno-common -DPIC -o .libs/gdkdnd-x11.o
libtool: compile: clang -DHAVE_CONFIG_H -I. -I../.. -DG_LOG_DOMAIN=\"Gdk\" -DGDK_COMPILATION -I../.. -I../../gdk -I../../gdk -DG_DISABLE_CAST_CHECKS -DDISABLE_VISIBILITY -D_REENTRANT -I/usr/local/Cellar/pcre/8.42/include -I/usr/local/Cellar/glib/2.56.1/include/gio-unix-2.0/ -I/usr/local/Cellar/glib/2.56.1/include/glib-2.0 -I/usr/local/Cellar/glib/2.56.1/lib/glib-2.0/include -I/usr/local/opt/gettext/include -I/usr/local/Cellar/libpng/1.6.34/include/libpng16 -I/usr/local/Cellar/gdk-pixbuf/2.36.12/include/gdk-pixbuf-2.0 -I/usr/local/opt/freetype/include/freetype2 -I/usr/local/Cellar/fontconfig/2.13.0/include -I/usr/local/Cellar/pixman/0.34.0_1/include/pixman-1 -I/usr/local/Cellar/cairo/1.14.12/include/cairo -I/usr/local/Cellar/fribidi/1.0.4/include/fribidi -I/usr/local/Cellar/graphite2/1.3.11/include -I/usr/local/Cellar/harfbuzz/1.8.0/include/harfbuzz -I/usr/local/Cellar/pango/1.42.1/include/pango-1.0 -I/opt/X11/include -I/opt/X11/include/cairo -I/opt/X11/include -DG_DISABLE_SINGLE_INCLUDES -DATK_DISABLE_SINGLE_INCLUDES -DGDK_PIXBUF_DISABLE_SINGLE_INCLUDES -DGTK_DISABLE_SINGLE_INCLUDES -I/opt/X11/include -g -O2 -Wall -c gdkevents-x11.c -fno-common -DPIC -o .libs/gdkevents-x11.o
gdkdrawable-x11.c:32:10: fatal error: 'cairo-xlib.h' file not found
#include <cairo-xlib.h>
^~~~~~~~~~~~~~
1 error generated.
make[3]: *** [gdkdrawable-x11.lo] Error 1
make[3]: *** Waiting for unfinished jobs....
make[2]: *** [install-recursive] Error 1
make[1]: *** [install] Error 2
make: *** [install-recursive] Error 1
Do not report this issue to Homebrew/brew or Homebrew/core!
...
cd build; ar -x ../lib/VisualSFM.a; cd ..;
Package gtk+-2.0 was not found in the pkg-config search path.
Perhaps you should add the directory containing `gtk+-2.0.pc'
to the PKG_CONFIG_PATH environment variable
No package 'gtk+-2.0' found
g++-4.9 -w -o bin/VisualSFM build/*.* -L/usr/local/lib -L/opt/X11/lib -pthread -lGL -lGLU -lX11 -ldl lib/lapack.a lib/blas.a lib/libf2c.a lib/libjpeg.a
Undefined symbols for architecture x86_64:
"_g_cclosure_new", referenced from:
RegisterWin::GetOpenFilePreview(char const*, char const*, int, int) in RegisterGUI.o
"_g_free", referenced from:
RegisterWin::__FileChooserPreview(_GtkFileChooser*, void*) in RegisterGUI.o
RegisterWin::__ComboBoxChanged(_GtkComboBox*, void*) in RegisterGUI.o
...
"_gtk_window_set_type_hint", referenced from:
GlobalTasks::InitLogWindow(char const*, int) in GlobalTasks.o
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status
make: *** [VisualSFM] Error 1
VSFM application failed to build, halting.
The problem seems to be do to the fact that it requires cairo with x11;however Apple no longer supports cairo with x11 because of XQuartz. I tried brew install --with-x11 cairo but got Warning: cairo: this formula has no --with-x11 option so it will be ignored! I am not sure if it would solve my problem with installing VisualSFM, but is there anyway to install an old version of Cairo with X11?

OpenCV 2.4.7 build on MacOS (Maverick + Xcode 5.01 + CUDA 5.5)

I couldn't build opencv with cuda support on Mavericks:
When using cmake -G "Unix Makefiles" -DWITH_CUDA=ON ..
i got error:
-- Configuring incomplete, errors occurred!
Any workaround on this?
(Similar error when using macport too)
CMakeError.log
Determining size of off64_t failed with the following output:
Change Dir: /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp
Run Build Command:/opt/local/bin/gmake "cmTryCompileExec3929617441/fast"
/opt/local/bin/gmake -f CMakeFiles/cmTryCompileExec3929617441.dir/build.make CMakeFiles/cmTryCompileExec3929617441.dir/build
gmake[1]: Entering directory `/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp'
/opt/local/bin/cmake -E cmake_progress_report /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec3929617441.dir/OFF64_T.c.o
/usr/bin/cc -fsigned-char -W -Werror=return-type -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-unnamed-type-template-args -fdiagnostics-show-option -fno-omit-frame-pointer -msse -msse2 -msse3 -O3 -DNDEBUG -o CMakeFiles/cmTryCompileExec3929617441.dir/OFF64_T.c.o -c /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CheckTypeSize/OFF64_T.c
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CheckTypeSize/OFF64_T.c:19:12: error: use of undeclared identifier 'off64_t'; did you mean 'off_t'?
('0' + ((SIZE / 10000)%10)),
^
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CheckTypeSize/OFF64_T.c:17:22: note: expanded from macro 'SIZE'
#define SIZE (sizeof(off64_t))
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/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CheckTypeSize/OFF64_T.c:20:12: error: use of undeclared identifier 'off64_t'; did you mean 'off_t'?
('0' + ((SIZE / 1000)%10)),
^
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CheckTypeSize/OFF64_T.c:17:22: note: expanded from macro 'SIZE'
#define SIZE (sizeof(off64_t))
^
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CheckTypeSize/OFF64_T.c:21:12: error: use of undeclared identifier 'off64_t'; did you mean 'off_t'?
('0' + ((SIZE / 100)%10)),
^
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CheckTypeSize/OFF64_T.c:17:22: note: expanded from macro 'SIZE'
#define SIZE (sizeof(off64_t))
^
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CheckTypeSize/OFF64_T.c:22:12: error: use of undeclared identifier 'off64_t'; did you mean 'off_t'?
('0' + ((SIZE / 10)%10)),
^
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CheckTypeSize/OFF64_T.c:17:22: note: expanded from macro 'SIZE'
#define SIZE (sizeof(off64_t))
^
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CheckTypeSize/OFF64_T.c:23:12: error: use of undeclared identifier 'off64_t'; did you mean 'off_t'?
('0' + (SIZE % 10)),
^
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CheckTypeSize/OFF64_T.c:17:22: note: expanded from macro 'SIZE'
#define SIZE (sizeof(off64_t))
^
5 errors generated.
gmake[1]: *** [CMakeFiles/cmTryCompileExec3929617441.dir/OFF64_T.c.o] Error 1
gmake[1]: Leaving directory `/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp'
gmake: *** [cmTryCompileExec3929617441/fast] Error 2
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CheckTypeSize/OFF64_T.c:
#include <sys/types.h>
#include <stdint.h>
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#ifdef __CLASSIC_C__
int main(argc, argv) int argc; char *argv[];
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int main(int argc, char *argv[])
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Determining if the include file io.h exists failed with the following output:
Change Dir: /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp
Run Build Command:/opt/local/bin/gmake "cmTryCompileExec647810530/fast"
/opt/local/bin/gmake -f CMakeFiles/cmTryCompileExec647810530.dir/build.make CMakeFiles/cmTryCompileExec647810530.dir/build
gmake[1]: Entering directory `/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp'
/opt/local/bin/cmake -E cmake_progress_report /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec647810530.dir/CheckIncludeFile.c.o
/usr/bin/cc -fsigned-char -W -Werror=return-type -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-unnamed-type-template-args -fdiagnostics-show-option -fno-omit-frame-pointer -msse -msse2 -msse3 -O3 -DNDEBUG -o CMakeFiles/cmTryCompileExec647810530.dir/CheckIncludeFile.c.o -c /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c:1:10: fatal error: 'io.h' file not found
#include <io.h>
^
1 error generated.
gmake[1]: *** [CMakeFiles/cmTryCompileExec647810530.dir/CheckIncludeFile.c.o] Error 1
gmake[1]: Leaving directory `/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp'
gmake: *** [cmTryCompileExec647810530/fast] Error 2
Determining if the function jbg_newlen exists failed with the following output:
Change Dir: /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp
Run Build Command:/opt/local/bin/gmake "cmTryCompileExec4172827471/fast"
/opt/local/bin/gmake -f CMakeFiles/cmTryCompileExec4172827471.dir/build.make CMakeFiles/cmTryCompileExec4172827471.dir/build
gmake[1]: Entering directory `/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp'
/opt/local/bin/cmake -E cmake_progress_report /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec4172827471.dir/CheckFunctionExists.c.o
/usr/bin/cc -fsigned-char -W -Werror=return-type -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-unnamed-type-template-args -fdiagnostics-show-option -fno-omit-frame-pointer -msse -msse2 -msse3 -DCHECK_FUNCTION_EXISTS=jbg_newlen -O3 -DNDEBUG -o CMakeFiles/cmTryCompileExec4172827471.dir/CheckFunctionExists.c.o -c /opt/local/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec4172827471
/opt/local/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec4172827471.dir/link.txt --verbose=1
/usr/bin/cc -fsigned-char -W -Werror=return-type -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-unnamed-type-template-args -fdiagnostics-show-option -fno-omit-frame-pointer -msse -msse2 -msse3 -DCHECK_FUNCTION_EXISTS=jbg_newlen -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTryCompileExec4172827471.dir/CheckFunctionExists.c.o -o cmTryCompileExec4172827471
Undefined symbols for architecture x86_64:
"_jbg_newlen", referenced from:
_main in CheckFunctionExists.c.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
gmake[1]: *** [cmTryCompileExec4172827471] Error 1
gmake[1]: Leaving directory `/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp'
gmake: *** [cmTryCompileExec4172827471/fast] Error 2
Determining if the include file linux/videodev.h exists failed with the following output:
Change Dir: /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp
Run Build Command:/opt/local/bin/gmake "cmTryCompileExec70111243/fast"
/opt/local/bin/gmake -f CMakeFiles/cmTryCompileExec70111243.dir/build.make CMakeFiles/cmTryCompileExec70111243.dir/build
gmake[1]: Entering directory `/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp'
/opt/local/bin/cmake -E cmake_progress_report /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec70111243.dir/CheckIncludeFile.c.o
/usr/bin/cc -fsigned-char -W -Werror=return-type -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-unnamed-type-template-args -fdiagnostics-show-option -fno-omit-frame-pointer -msse -msse2 -msse3 -O3 -DNDEBUG -o CMakeFiles/cmTryCompileExec70111243.dir/CheckIncludeFile.c.o -c /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c:1:10: fatal error: 'linux/videodev.h' file not found
#include <linux/videodev.h>
^
1 error generated.
gmake[1]: *** [CMakeFiles/cmTryCompileExec70111243.dir/CheckIncludeFile.c.o] Error 1
gmake[1]: Leaving directory `/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp'
gmake: *** [cmTryCompileExec70111243/fast] Error 2
Determining if the include file linux/videodev2.h exists failed with the following output:
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/opt/local/bin/gmake -f CMakeFiles/cmTryCompileExec661389614.dir/build.make CMakeFiles/cmTryCompileExec661389614.dir/build
gmake[1]: Entering directory `/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp'
/opt/local/bin/cmake -E cmake_progress_report /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec661389614.dir/CheckIncludeFile.c.o
/usr/bin/cc -fsigned-char -W -Werror=return-type -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-unnamed-type-template-args -fdiagnostics-show-option -fno-omit-frame-pointer -msse -msse2 -msse3 -O3 -DNDEBUG -o CMakeFiles/cmTryCompileExec661389614.dir/CheckIncludeFile.c.o -c /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c:1:10: fatal error: 'linux/videodev2.h' file not found
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gmake[1]: Entering directory `/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp'
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Building C object CMakeFiles/cmTryCompileExec741892054.dir/CheckIncludeFile.c.o
/usr/bin/cc -fsigned-char -W -Werror=return-type -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-unnamed-type-template-args -fdiagnostics-show-option -fno-omit-frame-pointer -msse -msse2 -msse3 -O3 -DNDEBUG -o CMakeFiles/cmTryCompileExec741892054.dir/CheckIncludeFile.c.o -c /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c:1:10: fatal error: 'sys/videoio.h' file not found
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gmake[1]: Entering directory `/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp'
/opt/local/bin/cmake -E cmake_progress_report /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec2161613468.dir/CheckIncludeFile.c.o
/usr/bin/cc -fsigned-char -W -Werror=return-type -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-unnamed-type-template-args -fdiagnostics-show-option -fno-omit-frame-pointer -msse -msse2 -msse3 -O3 -DNDEBUG -o CMakeFiles/cmTryCompileExec2161613468.dir/CheckIncludeFile.c.o -c /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c:1:10: fatal error: 'libavformat/avformat.h' file not found
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Run Build Command:/opt/local/bin/gmake "cmTryCompileExec188285781/fast"
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gmake[1]: Entering directory `/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp'
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Building C object CMakeFiles/cmTryCompileExec188285781.dir/CheckIncludeFile.c.o
/usr/bin/cc -fsigned-char -W -Werror=return-type -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-unnamed-type-template-args -fdiagnostics-show-option -fno-omit-frame-pointer -msse -msse2 -msse3 -O3 -DNDEBUG -o CMakeFiles/cmTryCompileExec188285781.dir/CheckIncludeFile.c.o -c /Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c
/Users/caominhvu/Downloads/opencv-2.4.7/build/CMakeFiles/CMakeTmp/CheckIncludeFile.c:1:10: fatal error: 'ffmpeg/avformat.h' file not found
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^
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Here's how I compiled OpenCV 2.4.8 on OSX Mavericks 10.9.1 using Xcode 5.0.2 and CUDA 5.5:
open CMake to set the project, and to the basic configuration
in latest Xcode (I think >= 5) there's no more the gcc compiler, deprecated in favor of clang, so go to the CUDA options of the CMAKE project and change CUDA_HOST_COMPILER to use "/usr/bin/clang". Luckily CUDA 5.5 supports clang and not only gcc
Apparently CUDA 5.5 supports only the older libstdc++ library and not the more modern libc++, so update CUDA_NVCC_FLAGS to tell mvcc to pass tell the nativa compilar to use this older library. Add "-Xcompiler -stdlib=libstdc++; -Xlinker -stdlib=libstdc++"
Tell also the C++ compiler that compiles the rest of the library to use libstdc++: show the advanced options of CMAKE and go to CMAKE to add "-stdlib=libstdc++" to both CMAKE_CXX_FLAGS and CMAKE_EXE_LINKER_FLAGS
For anyone coming here later who may be trying to install from this tutorial. I ran into this problem because my OPENCV_EXTRA_MODULES_PATH was pointing to the wrong directory. I had mine in ~/src/, and not just ~/

Removing padding from structure in kernel module

I am compiling a kernel module, containing a structure of size 34, using the standard command.
make -C /lib/modules/$(KVERSION)/build M=$(PWD) modules
The sizeof(some_structure) is coming as 36 instead of 34 i.e. the compiler is padding the structure.
How do I remove this padding?
Running make V=1 shows the gcc compiler options passed as
make -I../inc -C /lib/modules/2.6.29.4-167.fc11.i686.PAE/build M=/home/vishal/20100426_eth_vishal/organised_eth/src modules
make[1]: Entering directory `/usr/src/kernels/2.6.29.4-167.fc11.i686.PAE'
test -e include/linux/autoconf.h -a -e include/config/auto.conf || ( \
echo; \
echo " ERROR: Kernel configuration is invalid."; \
echo " include/linux/autoconf.h or include/config/auto.conf are missing."; \
echo " Run 'make oldconfig && make prepare' on kernel src to fix it."; \
echo; \
/bin/false)
mkdir -p /home/vishal/20100426_eth_vishal/organised_eth/src/.tmp_versions ; rm -f /home/vishal/20100426_eth_vishal/organised_eth/src/.tmp_versions/*
make -f scripts/Makefile.build obj=/home/vishal/20100426_eth_vishal/organised_eth/src
gcc -Wp,-MD,/home/vishal/20100426_eth_vishal/organised_eth/src/.eth_main.o.d -nostdinc -isystem /usr/lib/gcc/i586-redhat-linux/4.4.0/include -Iinclude -I/usr/src/kernels/2.6.29.4-167.fc11.i686.PAE/arch/x86/include -include include/linux/autoconf.h -D__KERNEL__ -Wall -Wundef -Wstrict-prototypes -Wno-trigraphs -fno-strict-aliasing -fno-common -Werror-implicit-function-declaration -Os -m32 -msoft-float -mregparm=3 -freg-struct-return -mpreferred-stack-boundary=2 -march=i686 -mtune=generic -Wa,-mtune=generic32 -ffreestanding -DCONFIG_AS_CFI=1 -DCONFIG_AS_CFI_SIGNAL_FRAME=1 -pipe -Wno-sign-compare -fno-asynchronous-unwind-tables -mno-sse -mno-mmx -mno-sse2 -mno-3dnow -Iarch/x86/include/asm/mach-generic -Iarch/x86/include/asm/mach-default -Wframe-larger-than=1024 -fno-stack-protector -fno-omit-frame-pointer -fno-optimize-sibling-calls -g -pg -Wdeclaration-after-statement -Wno-pointer-sign -fwrapv -fno-dwarf2-cfi-asm -DTX_DESCRIPTOR_IN_SYSTEM_MEMORY -DRX_DESCRIPTOR_IN_SYSTEM_MEMORY -DTX_BUFFER_IN_SYSTEM_MEMORY -DRX_BUFFER_IN_SYSTEM_MEMORY -DALTERNATE_DESCRIPTORS -DEXT_8_BYTE_DESCRIPTOR -O0 -Wall -DT_ETH_1588_051 -DALTERNATE_DESCRIPTORS -DEXT_8_BYTE_DESCRIPTOR -DNETHERNET_INTERRUPTS -DETH_IEEE1588_TESTS -DSNAPTYPSEL_TMSTRENA_TEVENTENA_TESTS -DT_ETH_1588_140_147 -DLOW_DEBUG_PRINTS -DMEDIUM_DEBUG_PRINTS -DHIGH_DEBUG_PRINTS -DMODULE -D"KBUILD_STR(s)=#s" -D"KBUILD_BASENAME=KBUILD_STR(eth_main)" -D"KBUILD_MODNAME=KBUILD_STR(conxt_eth)" -c -o /home/vishal/20100426_eth_vishal/organised_eth/src/eth_main.o /home/vishal/20100426_eth_vishal/organised_eth/src/eth_main.c
If using GCC, you can use the packed attribute on your structure to prevent padding:
struct foo
{
void * bar;
}
__attribute__( ( packed ) );
#pragma pack might work
I suspect that GCC is forcing the total structure to be aligned onto a 32 bit boundary, so its size is a multiple of 4.
Imagine the following.
struct foo
{
void * bar ;
some other stuff .....
};
struct foo my_foo_array[10];
Then if the sizeof(struct foo) is not a multiple of 4 then.
my_foo_array[0].bar has a different memory alignment to my_foo_array[1].bar. The processor would need to perform 2 32 bit memory accesses in order to access all four bytes of my_foo_array[1].bar. x86 processors will do this reassembly of misaligned 32 bit values but most other processors will throw some form of bus error exception which is not good.
The packed attribute signals how the elements of the structure are packed with respect to each other, but in normal operation the start of structure needs to placed on a 32 bit aligned address.
I hope this explains things a little better.

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