Spring Boot: Error creating bean with name 'entityManagerFactory' - spring

Question

I am trying to create a table to be displayed on localhost. No matter how many times I try I can not find the answer to my question. The guide for this project is here: http://www.baeldung.com/pagination-with-a-spring-rest-api-and-an-angularjs-table
The problem I am try to discover is where I should declare the bean for the emf. As seen below this is the error I am receiving. I can provide more code to assist. I know I have to make another xml to define the bean. I appreciate the help
ERROR Message
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in class path resource [org/springframework/boot/autoconfigure/orm/jpa/HibernateJpaAutoConfiguration.class]: Invocation of init method failed; nested exception is java.lang.NoClassDefFoundError: javax/xml/bind/JAXBException
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1628) ~[spring-beans-4.3.13.RELEASE.jar:4.3.13.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:555) ~[spring-beans-4.3.13.RELEASE.jar:4.3.13.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483) ~[spring-beans-4.3.13.RELEASE.jar:4.3.13.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306) ~[spring-beans-4.3.13.RELEASE.jar:4.3.13.RELEASE]
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans-4.3.13.RELEASE.jar:4.3.13.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302) ~[spring-beans-4.3.13.RELEASE.jar:4.3.13.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans-4.3.13.RELEASE.jar:4.3.13.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1080) ~[spring-context-4.3.13.RELEASE.jar:4.3.13.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:857) ~[spring-context-4.3.13.RELEASE.jar:4.3.13.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:543) ~[spring-context-4.3.13.RELEASE.jar:4.3.13.RELEASE]
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:122) ~[spring-boot-1.5.9.RELEASE.jar:1.5.9.RELEASE]
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:693) [spring-boot-1.5.9.RELEASE.jar:1.5.9.RELEASE]
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:360) [spring-boot-1.5.9.RELEASE.jar:1.5.9.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:303) [spring-boot-1.5.9.RELEASE.jar:1.5.9.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1118) [spring-boot-1.5.9.RELEASE.jar:1.5.9.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1107) [spring-boot-1.5.9.RELEASE.jar:1.5.9.RELEASE]
at org.baeldung.web.main.Application.main(Application.java:17) [classes/:na]
pom.xml
<?xml version="1.0"?>
<project
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<modelVersion>4.0.0</modelVersion>
<artifactId>spring-rest-angular</artifactId>
<name>spring-rest-angular</name>
<version>1.0</version>
<packaging>war</packaging>
<parent>
<artifactId>spring-boot-starter-parent</artifactId>
<groupId>org.springframework.boot</groupId>
<version>1.5.9.RELEASE</version>
</parent>
<dependencies>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>3.1.0</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-tomcat</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-web</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.data</groupId>
<artifactId>spring-data-commons</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-data-jpa</artifactId>
</dependency>
<dependency>
<groupId>org.hsqldb</groupId>
<artifactId>hsqldb</artifactId>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>${commons-lang3.version}</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>${guava.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>io.rest-assured</groupId>
<artifactId>rest-assured</artifactId>
<version>3.0.0</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-test</artifactId>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<finalName>angular-spring-rest-sample</finalName>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<configuration>
<failOnMissingWebXml>false</failOnMissingWebXml>
</configuration>
</plugin>
</plugins>
</build>
<profiles>
<profile>
<id>integration</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<executions>
<execution>
<phase>integration-test</phase>
<goals>
<goal>test</goal>
</goals>
<configuration>
<excludes>
<exclude>**/*LiveTest.java</exclude>
</excludes>
<includes>
<include>**/*IntegrationTest.java</include>
<include>**/*UnitTest.java</include>
</includes>
</configuration>
</execution>
</executions>
<configuration>
<systemPropertyVariables>
<test.mime>json</test.mime>
</systemPropertyVariables>
</configuration>
</plugin>
</plugins>
</build>
</profile>
</profiles>
<properties>
<guava.version>19.0</guava.version>
<commons-lang3.version>3.5</commons-lang3.version>
<start-class>org.baeldung.web.main.Application</start-class>
</properties>
</project>
Config class
package org.baeldung.web.main;
import javax.sql.DataSource;
import org.springframework.boot.autoconfigure.domain.EntityScan;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.ComponentScan;
import org.springframework.context.annotation.Configuration;
import org.springframework.data.jpa.repository.config.EnableJpaRepositories;
import org.springframework.jdbc.core.JdbcTemplate;
import org.springframework.jdbc.datasource.embedded.EmbeddedDatabase;
import org.springframework.jdbc.datasource.embedded.EmbeddedDatabaseBuilder;
import org.springframework.jdbc.datasource.embedded.EmbeddedDatabaseType;
#EnableJpaRepositories("org.baeldung.web.dao")
#ComponentScan(basePackages = { "org.baeldung.web" })
#EntityScan("org.baeldung.web.entity")
#Configuration
public class PersistenceConfig {
#Bean
public JdbcTemplate getJdbcTemplate() {
return new JdbcTemplate(dataSource());
}
#Bean
public DataSource dataSource() {
EmbeddedDatabaseBuilder builder = new EmbeddedDatabaseBuilder();
EmbeddedDatabase db = builder.setType(EmbeddedDatabaseType.HSQL).addScript("/db/sql/data.sql").build();
return db;
}
}

Answer 1

Looking at your stack trace I believe the core issue is the NoClassDefFoundError for javax.xml.bind.JAXBException. I created a shell project using your pom file and you don't seem to have any dependency, direct or indirect, that would give you that class.
For my own projects I typically include the entire JEE API even if I only need a subset of it. So in Maven that would be (for JEE 7):
<dependency>
<groupId>javax</groupId>
<artifactId>javaee-api</artifactId>
<version>7.0</version>
<scope>provided</scope>
</dependency>
Since this includes the Servlet API you could remove your Servlet API dependency if you use the full JEE API.