Hbase commands not working in script executed via crontab - bash

I was trying to list the set of tables present in the hbase using the below script:
#!/bin/bash
/home/user/hbase-1.2.4/bin/hbase shell << eof > /home/user/myfile.txt
list 'RAW_5_.*'
eof
I am able to get the table list while i run the script in the bash terminal using ::
sh script.sh
, but its creating a 0kb file while running using the crontab. I have given the absolute path for the hbase.
Can anyone help on this bottleneck please?

Since it is executing properly from terminal and not in crontab, try loading user bash profile in the script instead of #!/bin/bash ie,
change
#!/bin/bash
to
. ~/.bash_profile
Usually #!/bin/bash is included in bash_profile and it will have user specific configurations as well.

Related

Old version of script is run unless invoked with "sh scriptname"

I'm making a small edit to a shell script I use to mask password inputs like so:
#!/bin/bash
printf "Enter login and press [ENTER]\n"
read user
printf "Enter password and press [ENTER]\n"
read -s -p pass
With the read -s -p pass being the updated part. For some reason I'm not seeing the changes when I run it normally by entering script.sh into the command line but I do see the changes when I run sh script.sh. I've tried opening new terminal windows, and have run it in both ITerm and the default Mac terminal. I'm far from a scripting master, does anyone know why I'm not seeing the changes without the prefix?
Use a full or relative path to the script to make sure you're running what you think you're running.
If you are running it as simply script.sh then the shell will PATH environment variable lookup to locate it. To see which script.sh bash would be using in that case, run type script.sh.
Relative Path
./script.sh
Full Path
/path/to/my/script.sh

AWS EC2 User Data: Commands not recognized when using sudo

I'm trying to create an EC2 User-data script to run other scripts on boot up. However, the scripts that I run fail to recognize some commands and variables that I'd already declared. I'm running the commands as the "ubuntu" user but it still isn't working.
My user-data script looks something like this:
export user="ubuntu"
sudo su $user -c ". ./run_script"
Within the script, I have these lines:
THIS_PATH="/some/path"
echo "export SOME_PATH=$THIS_PATH" >> ~/.bashrc
source ~/.bashrc
However, the script can't run SOME_PATH/application, and echo $SOME_PATH this returns a blank line. I'm confused because $SOME_PATH/application works when I log into the EC2 using SSH and my debug logs using whoami returns "ubuntu."
Am I missing something here?
Your data script is executed as root and su command leaves $HOME and other ENV variables intact (note that sudo is redundant). "su -" does not help either
So, do not use ~ or $HOME but full path /home/ubuntu/.bashrc
I found out the problem. It seems that source ~/.bashrc isn't enough to restart the shell -- the environment variables worked after I referenced them in another bash script.

sudo: command not found while using plink

Hi i have created a batch file (run.bat) that after execution connects me to UNIX server with help of plink. But issue starts from this point i have to execute a script after connection to my server the script contains a command sudo -l. After the execution i get the error as mentioned in subject can anyone help me on this issue ??
Batch File-:
"C:\Program Files\PuTTY" plink -ssh -pw Tos#12Ts w44dvftyw#caa1607UX009.wvd.abcd.net /opt/sieb/w44dvftyw/run.sh
Script file(run.sh) -:
#!/bin/bash
sudo -l
It says
sudo: command not found
But when i run my script normally on UNIX server it runs with no issues. What am i missing here to make it work this way please help.
Scripts such as ~/.profile or ~/.bash_profile responsible for setting up the current user's PATH are run only on login shells.
Running sh -c 'somescript' (as performed by ssh host 'somescript') is neither a login shell, nor an interactive shell; thus, it does not gain the benefit of such scripts.
This means that additions to the PATH (in your case, /usr/local/bin) may not be present with commands run in this way.
Among your options:
Pass the PATH you want as part of the command to remotely run. This might look like:
plink -ssh user#host "PATH=/bin:/usr/bin:/usr/local/bin /opt/sieb/w44dvftyw/run.sh"
Embed a working value in the script you're running:
#!/bin/bash
PATH=/bin:/usr/bin:/usr/local/bin
# ...put the rest of your script here.

Bash script failing when run by cron - mktemp outputting nothing

I have a shell script, that works when I run it manually, but silently fails when run via cron. I've trimmed it down to a very minimal example:
#!/usr/bin/env bash
echo "HERE:"
echo $(mktemp tmp.XXXXXXXXXX)
If I run that from the command line, it outputs HERE: and a new temporary filename.
But if I run it from a cron file like this, I only get HERE: followed by an empty line:
SHELL=/bin/bash
HOME=/
MAILTO=”me#example.com”
0 5 * * * /home/phil/test.sh > /home/phil/cron.log
What's the difference? I've also tried using /bin/mktemp, but no change.
The problem is that the script tries to create the temporary file in root directory when it is started from cron and it has no permission to do that.
The cron configuration file contains HOME=/. The current directory is / when the script starts. And the template passed to mktemp contains file name only so mktemp tries to create the temporary file in current directory and it is /.
$ HOME=/
$ cd
$ mktemp tmp.XXXXXXXXXX
mktemp: failed to create file via template ‘tmp.XXXXXXXXXX’: Permission denied

Script to change the directory path

I was trying the below program,
This is a simple script, to cd into a folder
#! /bin/bash
cd /root/
But this below command , doesnt get into the folder
EDITED
#!/bin/bash
alias ex="cd /fs/fm"
alias ex1="source setenv"
alias ex2="cd /fs/fm/tests"
alias ex3="runtest"
To get into /root/ you should make sure that you have permissions. It's accessible if you're running as root itself but if you're running as a normal user you should consider becoming root first. One way is to use sudo:
sudo bash script.sh
And again, make sure your script is in UNIX format. Certainly you can't change to /root/\r.
sed -i 's|\r||' script.sh
dos2unix script.sh
This will never work The script you're running is a separate process, when it finishes you get back to the original environment (cwd, enviroment variables, etc...).
Create an alias:
alias r="cd /root"
or execute the script within your shell:
. myscript
Note: . is a synonym for source.

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