Three js: How to normalize a mesh generated by vertices - three.js

Question

I'm somewhat new to Three js, and my linear algebra days were back in the 90s so I don't recall much about quarternions. My issue is I have 8 vertices for a cube that I can use to create a custom geometry mesh from, but it doesn't set the position / rotation / scale info for its world matrix. Therefor it can not be used cleanly by other three js modules like controls. I can look up the math and calculate what position / scale / rotation (rotation gets a bit hairy with some fun acos stuff) should be and create a standard boxgeometry from that. But it seems like there should be some way to do it via three js objects if I can generate the proper matrix to apply to it. The quarternion setFromUnitVectors looked interesting, but I'd still have to do some work to generate the vectors. Any ideas would be appreciated thanks
Edit: :) So let me try and simplify. I have 8 vertices, I want to create a box geometry. But box geometry doesn't take vertices. It takes width, height, depth (relatively easy to calculate) and then you set the position/scale/rotation. So here's my code thus far:
5____4
1/___0/|
| 6__|_7
2/___3/
const box = new Box3();
box.setFromPoints(points);
const width = points[1].distanceTo(points[0]);
const height = points[3].distanceTo(points[0]);
const depth = points[4].distanceTo(points[0]);
const geometry = new BoxGeometry(width, height, depth);
mesh = new Mesh(geometry, material);
const center = box.getCenter(new Vector3());
const normalizedCorner = points[0].clone().sub(center);
const quarterian = new Quaternion();
quarterian.setFromUnitVectors(geometry.vertices[0], normalizedCorner);
mesh.setRotationFromQuaternion(quarterian);
mesh.position.copy(center);
The problem being my rotation element is wrong (besides my vectors not being unit vectors). I'm apparently not getting the correct quarternion to rotate my mesh correctly.
Edit: From WestLangley's suggestion, I'm creating a rotation matrix. However, while it rotates in the correct plane, the angle is off. Here's what I have added:
const matrix = new Matrix4();
const widthVector = new Vector3().subVectors(points[6], points[7]).normalize();
const heightVector = new Vector3().subVectors(points[6], points[5]).normalize();
const depthVector = new Vector3().subVectors(points[6], points[2]).normalize();
matrix.set(
widthVector.x, heightVector.x, depthVector.x, 0,
widthVector.y, heightVector.y, depthVector.y, 0,
widthVector.z, heightVector.z, depthVector.z, 0,
0, 0, 0, 1,
);
mesh.quaternion.setFromRotationMatrix(matrix);

Answer 1

Per WestLangley's comments I wasn't creating my matrix correctly. The correct matrix looks like:
const matrix = new Matrix4();
const widthVector = new Vector3().subVectors(points[7], points[6]).normalize();
const heightVector = new Vector3().subVectors(points[5], points[6]).normalize();
const depthVector = new Vector3().subVectors(points[2], points[6]).normalize();
matrix.set(
widthVector.x, heightVector.x, depthVector.x, 0,
widthVector.y, heightVector.y, depthVector.y, 0,
widthVector.z, heightVector.z, depthVector.z, 0,
0, 0, 0, 1,
);
mesh.quaternion.setFromRotationMatrix(matrix);