I have a bash script which installs some software with apt-get as well as download and installs miniconda3. Later I would like to utilize conda command without restarting the shell. This script is called with sudo but for all the things related to conda I want to pose as a regular user, see below:
#!/usr/bin/env bash
# we are operating in the user's home dir
sudo -u $SUDO_USER bash Miniconda3-latest-Linux-x86_64.sh -b -p miniconda3
source [path_to_the_user_home]/miniconda3/etc/profile.d/conda.sh
sudo -u $SUDO_USER -H -s eval $(conda shell.bash hook)
sudo -u $SUDO_USER conda --version
However, I get an error that the command conda is not recognized. Interestingly, if the last line would be just conda --version then it is correctly recognised. It seems that the 2nd to last line worked for root, but not the user (which is exactly what I want)
How do I install the anaconda / miniconda without prompts on Linux command line?
Is there a way to pass -y kind of option to agree to the T&Cs, suggested installation location etc. by default?
can be achieved by bash miniconda.sh -b (thanks #darthbith)
The command line usage for this can only be seen with -h flag but not --help, so I missed it.
To install the anaconda to another place, use the -p option:
bash anaconda.sh -b -p /some/path
AFAIK pyenv let you install anaconda/miniconda
(after successful instalation)
pyenv install --list
pyenv install miniconda3-4.3.30
For a quick installation of miniconda silently I use a wrapper
script script that can be executed from the terminal without
even downloading the script. It takes the installation destination path
as an argument (in this case ~/miniconda) and does some validation too.
curl -s https://gist.githubusercontent.com/mherkazandjian/cce01cf3e15c0b41c1c4321245a99096/raw/03c86dae9a212446cf5b095643854f029b39c921/miniconda_installer.sh | bash -s -- ~/miniconda
Silent installation can be done like this, but it doesn't update the PATH variable so you can't run it after the installation with a short command like conda:
cd /tmp/
curl -LO https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -u
Here -b means batch/silent mode, and -u means update the existing installation of Miniconda at that path, rather than failing.
You need to run additional commands to initialize PATH and other shell init scripts, e.g. for Bash:
source ~/miniconda3/bin/activate
conda init bash
I want to automate the installation of perlbrew into the vagrant box. I use .sh file to accomplish this.
provision.sh
apt-get update
sudo -H -u vagrant bash -c " \curl -kL https://install.perlbrew.pl | bash"
sudo -u vagrant bash -c "source ~/perl5/perlbrew/etc/bashrc"
After ssh into the vagrant i expect that
$ which perlbrew
will return
/home/vagrant/perl5/perlbrew/bin/perlbrew
but unfortunately it returns nothing.
There is no way the settings applied by your source ~/perl5/perlbrew/etc/bashrc command would be visible in another bash session (and a SSH session executes a new bash process).
You need to add the command source ~/perl5/perlbrew/etc/bashrc to one of the bash "rc" files.
For a single user with the following command:
echo "source ~/perl5/perlbrew/etc/bashrc" >> ~/.bashrc
For all users with the following command:
echo "source ~/perl5/perlbrew/etc/bashrc" >> /etc/bash.bashrc
This way every time a new bash session is started, it will run source ~/perl5/perlbrew/etc/bashrc and apply the settings.
I am running docker and I want bash command completion for docker commands and parameters.
If you have already homebrew bash-completion installed just install the docker completion script into the bash_completion.d
curl -XGET https://raw.githubusercontent.com/docker/cli/master/contrib/completion/bash/docker > $(brew --prefix)/etc/bash_completion.d/docker
Note: If you do not have homebrew bash-completion installed, follow these instructions to install it before you execute the line above.
Note: the completion depends on some functions defined in debian bash-completion. Therefore, just sourcing the docker completion script as described in completion/bash/docker may not work. If you try to complete docker run (by hitting TAB) you may get an error like __ltrim_colon_completions: command not found. This could mean that you have not installed the bash-completion scripts.
The official Docker for Mac page has a section on installing bash completion:
https://docs.docker.com/docker-for-mac/#bash
If you have Homebrew bash completion installed:
cd /usr/local/etc/bash_completion.d
ln -s /Applications/Docker.app/Contents/Resources/etc/docker.bash-completion
ln -s /Applications/Docker.app/Contents/Resources/etc/docker-machine.bash-completion
ln -s /Applications/Docker.app/Contents/Resources/etc/docker-compose.bash-completion
The completion scripts come with Docker Beta. I want them to stay up to date. So, on OS X...
Install homebrew's bash-completion
Symlink the files
find /Applications/Docker.app \
-type f -name "*.bash-completion" \
-exec ln -s "{}" "$(brew --prefix)/etc/bash_completion.d/" \;
The stumbling point for me was that once you brew install bash-competion, you have to add few lines in your .bash_profile to load it once you launch Terminal:
if [ -f $(brew --prefix)/etc/bash_completion ]; then
. $(brew --prefix)/etc/bash_completion
fi
Source:
http://davidalger.com/development/bash-completion-on-os-x-with-brew/
Because I haven't found anywhere a step by step documentation, I've made a quick script to install homebrew, bash-completion and eventually the completion scripts for docker.
https://github.com/HypnoTheNomad/docker-bash-completion-macos-brew
The auto completion of docker needed not only for mac, its also needed for ubuntu / bash terminals.
In Ubuntu
curl -ksSL https://raw.githubusercontent.com/docker/cli/master/contrib/completion/bash/docker |sudo tee /etc/bash_completion.d/docker
Completion will be available upon next login.
Since its top result in google I added answer here.
The official Docker site has a section for Command-line completion, and for Mac to:
https://docs.docker.com/compose/completion/#mac
Helped for me with Homebrew:
brew install bash-completion
After the installation, Brew displays the installation path. From documentation is correct for me:
/usr/local/etc/bash_completion.d/
Run the script:
sudo curl -L https://raw.githubusercontent.com/docker/compose/1.25.4/contrib/completion/bash/docker-compose -o /usr/local/etc/bash_completion.d/docker-compose
Open and add following in the end of your file ~/.bash_profile:
if [ -f $(brew --prefix)/etc/bash_completion ]; then
. $(brew --prefix)/etc/bash_completion
fi
Restart terminal. It's all.
Guide to setup autocomplete for ZSH on Mac OSX
Follow these steps if you are using oh-my-zsh and autocomplete is not working:
Step 1:
Make the following three links:
ln -s /Applications/Docker.app/Contents/Resources/etc/docker.zsh-completion /usr/local/share/zsh/site-functions/_docker
ln -s /Applications/Docker.app/Contents/Resources/etc/docker-compose.zsh-completion /usr/local/share/zsh/site-functions/_docker-compose
Step 2:
Either add autoload -Uz compinit; compinit to .zshrc
or run echo "autoload -Uz compinit; compinit" >> .zshrc in your shell
Just to be said:
if you use brew:
brew install docker
will do all what you need. It includes brew link docker which installs the completion into `brew --prefix`/etc/bash_completion.d/docker
same topic, same answer for docker-machine, docker-compose, etc. ...
else (perhaps you are using Docker Beta (new "more native" docker installation package without Virtualbox) you still have to add it manually, then follow Michael's answer plus have a look at the additional completion scripts for docker-machine, docker-compose and some shell-helper that are handled in the 'script' from CodeCorrupt
I am very new to bash scripting. I have the following script:
cp /etc/apt/sources.list /var/chroot/etc/apt/sources.list
chroot /var/chroot/
apt-get update
apt-get --simulate install $a > output
I actually want the last 2 comands to be run in chroot environment but I do not know how to give it to it, I searched but I could not find. I also want chroot to exit after execution of the commands, but it currently hangs. What can I do to prevent this?
EDIT: For future visitors:
cp /etc/apt/sources.list /var/chroot/etc/apt/sources.list
chroot /var/chroot apt-get update > /dev/null
chroot /var/chroot apt-get --simulate install nodejs
The command you want to run in the chroot environment must be given to chroot as an argument. See the manual page.