I am trying to install JDFTx by simply following the instructions on the page http://jdftx.org/CompilingBasic.html.
I have installed Cygwin from here (Windows, x64): https://cygwin.com/install.html . And I also believe that I have installed necessary libraries, listed here: http://jdftx.org/Dependencies.html .
Now, when I enter in the Cygwin64 terminal the command:
cmake ../jdftx-VERSION/jdftx
I am getting the following message:
CMake Error at /usr/share/cmake-3.6.2/Modules/FindBLAS.cmake:690 (message):
A required library with BLAS API not found. Please specify library
location.
Call Stack (most recent call first):
/usr/share/cmake-3.6.2/Modules/FindLAPACK.cmake:165 (find_package)
CMake-Modules/FindLAPACK_ATLAS.cmake:20 (find_package)
CMakeLists.txt:85 (find_package)
-- Configuring incomplete, errors occurred!
See also "/cygdrive/c/jdftx/build/CMakeFiles/CMakeOutput.log".
See also "/cygdrive/c/jdftx/build/CMakeFiles/CMakeError.log".
The solution is to use this command instead, thus explicitly specifying the location of the library:
cmake -DLAPACK_LIBRARIES=/usr/lib/liblapack.dll.a ../jdftx-1.4.1/jdftx
However, now I am getting the following output, containing another error message:
-- Forcing static linking for Cygwin/Windows
-- Found GSL: /lib/libgsl.dll.a
-- Found FFTW3: /lib/libfftw3_threads.dll.a /lib/libfftw3.dll.a
-- Found LAPACK: /usr/lib/liblapack.dll.a
-- Found CBLAS: /usr/lib/libgslcblas.dll.a
-- Found MPI_C: /usr/lib/libmpi.dll.a;/usr/lib/libopen-rte.dll.a;/usr/lib/libope n-pal.dll.a;/usr/lib/libm.a;/usr/lib/w32api/libgdi32.a
CMake Warning at /usr/share/cmake-3.6.2/Modules/FindMPI.cmake:420 (message):
Unable to find MPI library mpi_cxx
Call Stack (most recent call first):
/usr/share/cmake-3.6.2/Modules/FindMPI.cmake:610 (interrogate_mpi_compiler)
CMakeLists.txt:93 (find_package)
CMake Error at /usr/share/cmake-3.6.2/Modules/FindPackageHandleStandardArgs.cmak e:148 (message):
Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES)
Call Stack (most recent call first):
/usr/share/cmake-3.6.2/Modules/FindPackageHandleStandardArgs.cmake:388 (_FPHSA _FAILURE_MESSAGE)
/usr/share/cmake-3.6.2/Modules/FindMPI.cmake:628 (find_package_handle_standard _args)
CMakeLists.txt:93 (find_package)
-- Configuring incomplete, errors occurred!
See also "/cygdrive/c/jdftx/build/CMakeFiles/CMakeOutput.log".
See also "/cygdrive/c/jdftx/build/CMakeFiles/CMakeError.log".
Would anyone have an idea what other option should I use in the cmake call?
Thanks!
The solution is:
cmake -DLAPACK_LIBRARIES=/usr/lib/liblapack.dll.a -DMPI_CXX_LIBRARIES=/usr/lib/libmpi_mpifh.dll.a ../jdftx-1.4.1/jdftx
Now I realize, this is not a solution for the second error...
The actual solution is to uninstall all related libraries and install previous versions (instead of the newest ones). After I have done it, everything works fine.
Related
When trying to compile cv_bridge in ROS2 cmake find_package does not find boost-python3 package.
Follow error ensues:
--- stderr: cv_bridge
CMake Error at /usr/local/Cellar/cmake/3.17.1/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:164 (message):
Could NOT find Boost (missing: python3) (found version "1.72.0")
Call Stack (most recent call first):
/usr/local/Cellar/cmake/3.17.1/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:445 (_FPHSA_FAILURE_MESSAGE)
/usr/local/Cellar/cmake/3.17.1/share/cmake/Modules/FindBoost.cmake:2145 (find_package_handle_standard_args)
CMakeLists.txt:32 (find_package)
---
Failed <<< cv_bridge [ Exited with code 1 ]
What is the reason for this?
Making sure CMake uses the built-in Boost CMake files instead of the Boost-installed one fixes the issue:
colcon build --symlink-install --cmake-args ' -DBoost_NO_BOOST_CMAKE:BOOL=0'
Add the CMake argument -D Boost_NO_BOOST_CMAKE:BOOL=0
As described and referenced from here https://www.forum.freecadweb.org/viewtopic.php?f=4&t=39301 :
This tells cmake to not use the cmake-config files included in boost directly. Instead config files from cmake are used like for the previous boost versions.
I want to install CGAL in my account in our cluster; as a prerequisite, I installed PMG in a folder, and according to this post https://unix.stackexchange.com/questions/265239/how-to-install-a-custom-gmp-lib-for-just-one-user
I added some lines to the content of the .bashrc file.
GMP_DIR="${HOME}/gmp-6.1.2"
export LD_LIBRARY_PATH=${GMP_DIR}/lib64:$LD_LIBRARY_PATH
export LIBRARY_PATH=${GMP_DIR}/lib64:$LIBRARY_PATH
export CPATH=${GMP_DIR}/include:$CPATH
But after configuring CGAL with the following command
cmake -DWITH_CGAL_Core=ON -DWITH_CGAL_Qt5=OFF -DWITH_CGAL_ImageIO=OFF -DWITH_examples=OFF -DWITH_demos=OFF -DGMP_LIBRARIES_DIR:PATH=/data/home/parisa/gmp-6.1.2/lib -DGMP_INCLUDE_DIR:PATH=/data/home/parisa/gmp-6.1.2/include .
I got this error message :
External libraries supported: GMP;GMPXX;MPFR;ZLIB;OpenGL;LEDA;MPFI;RS;RS3;OpenNL;Eigen3;BLAS;LAPACK;QGLViewer;ESBTL;Coin3D;NTL;IPE
-- Preconfiguring library: GMP ...
-- Could NOT find GMP (missing: GMP_LIBRARIES)
CMake Error at cmake/modules/CGAL_SetupDependencies.cmake:66 (message):
CGAL requires GMP to be found
Call Stack (most recent call first):
CMakeLists.txt:673 (include)
-- Configuring incomplete, errors occurred!
See also "/data/home/parisa/CGAL-4.9.1/CMakeFiles/CMakeOutput.log".
I tried to change the lib in the above command to libgmp.a, libgmp.la ,and ... but none of them worked!
How can I fix this error?
I am trying to build FlightGear project using CMake and following the directions line by line found in the article here I am building on windows. I click Configure on CMake, select my code generator and then I get this error messages
CMake Error at C:/Program Files/CMake/share/cmake-3.6/Modules/ExternalProject.cmake:2140 (get_property):
get_property could not find TARGET WinDeps. Perhaps it has not yet been
created.
Call Stack (most recent call first):
C:/Program Files/CMake/share/cmake-3.6/Modules/ExternalProject.cmake:2476 (_ep_add_configure_command)
CMakeLists.txt:84 (ExternalProject_Add)
Any idea what might be causing this issue?
Windeps is no longer defined as part of flightgear so I removed the command
list(APPEND OSG_DEPS WinDeps)
from CMakeLists.txt and build was successful
I have a problem to use boost with biicode. I have a simple project with a main. The project uses boost. In order to get boost with biicode I used the following cmake file:
include(biicode/boost/setup)
ADD_BII_TARGETS()
bii_find_boost(COMPONENTS unit_test_framework REQUIRED)
target_include_directories(${BII_BLOCK_TARGET} INTERFACE ${Boost_INCLUDE_DIRS})
target_link_libraries(${BII_BLOCK_TARGET} INTERFACE ${Boost_LIBRARIES})
If I now call "bii configure", boost is downloaded and extracted (i checked the .biicode/boost folder). Nevertheless I get some weired errors (A trace version can be found here) and the configuration process fails:
$ bii configure --verbose
DEBUG: Everything up to date
DEBUG: No valid files found in d:\C++\Workspace\testx\blocks
INFO: Processing changes...
Running: "cmake" -G "Visual Studio 12" -Wno-dev ..\cmake
BLOCK: user/testx
-----------------------------------------------------------
CMake Error at C:/Users/Tobi/AppData/Local/Temp/file_make_temporary_m6QEuq5c7B.tmp:1 (__func_1111111111):
__func_1111111111 Function invoked with incorrect arguments for function
named: __func_1111111111
Call Stack (most recent call first):
C:/Users/Tobi/AppData/Local/Temp/file_make_temporary_m6QEuq5c7B.tmp:4 (include)
../deps/toeb/cmakepp/cmake/task/task_run_next.cmake:34 (eval)
../deps/toeb/cmakepp/cmake/task/task_run_next.cmake:42 (task_run_next)
../deps/toeb/cmakepp/cmake/task/task_run_all.cmake:6 (task_run_next)
../deps/toeb/cmakepp/cmakepp.cmake:110 (task_run_all)
../deps/boost/install/build_jobs.cmake:1 (include)
../deps/boost/install/install.cmake:2 (include)
../deps/biicode/boost/setup.cmake:1 (include)
../../CMakeLists.txt:1 (include)
CMake Error at C:/Users/Tobi/AppData/Local/Temp/file_make_temporary_m6QEuq5c7B.tmp:1 (__func_6oohAf7Azh):
__func_6oohAf7Azh Function invoked with incorrect arguments for function
named: __func_6oohAf7Azh
Call Stack (most recent call first):
C:/Users/Tobi/AppData/Local/Temp/file_make_temporary_m6QEuq5c7B.tmp:4 (include)
../deps/toeb/cmakepp/cmake/task/task_run_next.cmake:34 (eval)
../deps/toeb/cmakepp/cmake/task/task_run_all.cmake:6 (task_run_next)
../deps/toeb/cmakepp/cmakepp.cmake:110 (task_run_all)
../deps/boost/install/build_jobs.cmake:1 (include)
../deps/boost/install/install.cmake:2 (include)
../deps/biicode/boost/setup.cmake:1 (include)
../../CMakeLists.txt:1 (include)
CMake Error at C:/Users/Tobi/AppData/Local/Temp/file_make_temporary_m6QEuq5c7B.tmp:1 (__func_F9SWokvms4):
__func_F9SWokvms4 Function invoked with incorrect arguments for function
named: __func_F9SWokvms4
Call Stack (most recent call first):
C:/Users/Tobi/AppData/Local/Temp/file_make_temporary_m6QEuq5c7B.tmp:4 (include)
../deps/toeb/cmakepp/cmake/task/task_run_next.cmake:34 (eval)
../deps/toeb/cmakepp/cmake/task/task_run_all.cmake:6 (task_run_next)
../deps/toeb/cmakepp/cmakepp.cmake:110 (task_run_all)
../deps/boost/install/build_jobs.cmake:1 (include)
../deps/boost/install/install.cmake:2 (include)
../deps/biicode/boost/setup.cmake:1 (include)
../../CMakeLists.txt:1 (include)
CMake Error at C:/Users/Tobi/AppData/Local/Temp/file_make_temporary_m6QEuq5c7B.tmp:1 (__func_Grm00gZzHB):
__func_Grm00gZzHB Function invoked with incorrect arguments for function
named: __func_Grm00gZzHB
Call Stack (most recent call first):
C:/Users/Tobi/AppData/Local/Temp/file_make_temporary_m6QEuq5c7B.tmp:4 (include)
../deps/toeb/cmakepp/cmake/task/task_run_next.cmake:34 (eval)
../deps/toeb/cmakepp/cmake/task/task_run_all.cmake:6 (task_run_next)
../deps/toeb/cmakepp/cmakepp.cmake:110 (task_run_all)
../deps/boost/install/build_jobs.cmake:1 (include)
../deps/boost/install/install.cmake:2 (include)
../deps/biicode/boost/setup.cmake:1 (include)
../../CMakeLists.txt:1 (include)
+ LIB: user_testx
+ EXE: user_testx___main
-- No linking type specified. Assuming static linking
-- Setting up biicode Boost configuration...
-- Building Boost 1.57.0 components with toolset msvc-12.0...
Starting unit_test_framework library build job...
Building Boost components, please wait [ ]
Finished building unit_test_framework library
-- Boost version: 1.57.0
-- Boost version: 1.57.0
-- Found the following Boost libraries:
-- unit_test_framework
-- Configuring incomplete, errors occurred!
See also "D:/C++/Workspace/testx/bii/build/CMakeFiles/CMakeOutput.log".
ERROR: CMake failed
Ok I failed to figure out what the problem was, but i fixed it^^. The problem was something with a binary symbol RS (E1 (hex) in ascii) which was placed in some source files of https://github.com/toeb/cmakepp (must be a cmake problem, because after removing them they appeared again after executing cmake).
The problem disappeared after updating cmake from version 3.1.0-rc1 -> 3.3.0-rc3.
Encountered the following message while cmake-ing libjreen on Mac.
$ cmake ..
-- checking for module 'qca2'
-- package 'qca2' not found
CMake Error at /opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:91 (MESSAGE):
Could NOT find QCA2 (missing: QCA2_LIBRARIES QCA2_INCLUDE_DIR)
Call Stack (most recent call first):
/opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:252 (_FPHSA_FAILURE_MESSAGE)
cmake/FindQCA2.cmake:44 (find_package_handle_standard_args)
CMakeLists.txt:22 (FIND_PACKAGE)
-- Configuring incomplete, errors occurred!
How do I go on about installing qca2?
Update I have installed qca through macports without any luck. It seems I would need libqca2-devel which is not present on macports. How do I install libqca2-devel?
Well, this got solved.
I had to install qca2 from source so that cmake could pick it up