How to run for loop inside heredoc while accessing remote machine - bash

Here is my script in which I use local variable inside a remote machine using heredoc. But the loop under the heredoc takes the first variable value only. The loop runs fine inside the heredoc but with the same values.
#!/bin/bash
prod_web=($(cat /tmp/webip.txt));
new_prod_app_private_ip=($(cat /tmp/ip.txt));
no_n=($(cat /tmp/serial.txt));
ssh -t -o StrictHostKeyChecking=no ubuntu#${prod_web[0]} -p 2345 -v << EOF
set -xv
for (( x = 0; x < '${#no_n[#]}'; x++ ))
do
sudo su
echo '${no_n[x]}'
echo '${new_prod_app_private_ip[x]}'
curl -fIkSs https://'${new_prod_app_private_ip[x]}':9002 | head -n 1
done
EOF
So, my ip.txt file contains values like:
10.0.1.0
10.0.2.0
10.0.3.0
My serial.txt file:
9
10
11
So, my loop runs for only the first IP (present in /tmp/ip.txt) in the remote machine, three times. I want to run it for all the three IPs. My remote ip is present in the file /tmp/webip.txt.
Got stuck for a long time, any help is appreciated. Is there any other solution that I can go with?

There are 2 environments. On your local machine and on the remote machine. You need to think how to transfer data/variables/state/objects/handles between these machines.
If you set something on your local machine (ie. prod_web=($(cat /tmp/webip.txt));) and then just ssh to remote host (ie. ssh user#host 'echo "${prod_web[#]}"'), the variable will not be visible/exported to the remote machine. You can:
scp the files {ip,serial}.txt and execute the whole script on the remote machine, then cleanup , ie. remove the {ip,serial}.txt files from the remote machine
pass the files {ip,serial}.txt somehow merged/joined/pasted to the stdin of the ssh and then read up stdin on the remove machine
create all the commands to run on your local machine and then pass pre-prepared commands to remote machine, like ssh .... "$(for ...; do; echo curl ...; done)"
I would go with the second option, as I like passing everything using pipes and don't like to cleanup after me - removing temporary files in case of error can be a mess.
My script would probably look like this:
#!/bin/bash
set -euo pipefail
read -r host _ <webip.txt
paste serial.txt ip.txt | ssh -t -o StrictHostKeyChecking=no -p 2345 -v ubuntu#"$host" '#!/bin/bash
set -euo pipefail
while read -r no_n ip; do
for ((i = 0; i < no_n; ++i)); do
printf "%s\n" "$no_n"
printf "%s\n" "$ip"
curl -fIkSs https://"$ip":9002 | head -n 1
done
done
'
As the remote script would become larger and less qouting friendly, I would save it into another remote_scripts.sh and execute ssh ... -m remote_scripts.sh.
I don't get what you are trying to do with that sudo su, which 100% does not do what you want.
If the no_n magic number is the number of times to execute that curl and you have xargs and you don't really care about errors, you can just do a magic and confusing oneliner:
#!/bin/bash
set -euo pipefail
read -r host _ <webip.txt
paste serial.txt ip.txt | ssh -t -o StrictHostKeyChecking=no -p 2345 -v ubuntu#"$host" 'xargs -n2 -- sh -c "seq 0 \"\$1\" | xargs -n1 -- sh -c \"curl -fIkSs https://\\\"\\\$1\\\":9002 | head -n 1\" -- \"\$2\"" --'
Preparing all the command to run maybe actually more readable and may save some nasty qouting to resolve. But this really depends on how big serial.txt and ip.txt are and how big are the commands to be executed on the remote machine, as you want to minimize the number of bytes transferred between machines.
Here the commands to run are constructed on local machine (ie. "$(...)" is passed to ssh) and executed on remote machine:
# semi-readable script, not as fast and no xargs
ssh -t -o StrictHostKeyChecking=no -p 2345 -v ubuntu#"$host" "$(paste serial.txt ip.txt | while read -r serial ip; do
seq 0 "$serial" | while read -r _; do
echo "curl -fIkSs \"https://$ip:9002\" | head -n 1"
done
done)"
HERE-doc does not expand shell commands, so:
$ cat <<EOF
> echo 1
> EOF
echo 1
but you can use command substitution $( ... ):
$ cat <<EOF
> $(echo 1)
> EOF
1

Related

How to execute a bash command with arguments from array elements?

I am writing a simple bash script on Linux to ping some hosts, e.g.:
ping -c 1 google.com
ping -c 1 amazon.com
...
In my approach, I am loading the hosts from a separate file into an array and then loop over the elements. The problem occurs when calling the ping command with elements from the array. Executing the following script gives me an error message.
#!/bin/bash
IFS=$'\n' read -d '' -r hosts < hostnames.txt
for host in "${hosts[#]}"
do
ping -c 1 ${host}
done
I guess there is something wrong with the syntax, but I couldn't figure it out yet.
Your hostnames.txt was generated on a Windows machine?
Your hostnames have trailing \r characters, so the lookups fail.
Try this:
cp hostnames.txt hostnames.txt.bkp
dos2unix hostnames.txt.bkp hostnames.txt
And then run your script again.
If you don't have dos2unix installed and don't want to install it ... maybe you have tr already available. In that case this should do the trick, too:
tr -d '\r' < hostnames.txt.bkp > hostnames.txt

Output not showing all echo commands

I'm using a bash script which is run on serverA and connects to serverB to run a file.
The results are saved in a variable and then echo'd. However it doesn't echo all of the data.
The script on serverA is running:
count=$(sshpass -p password ssh -t -q user#serverB cd /home/tom && ./count.sh)
echo "Count: $count"
This echos: 341 not Count: 341
The count.sh script on serverB is looping through some folders and doing a count of files.
E.g.
total=0
count=$(ls -l | wc -l | xargs)
if [ "$count" > 0 ]; then
total=$(( total + count ))
fi
echo "$total"
How do I display the full echo on serverA?
You are attempting to run ./count.sh on the local machine, not the remote host. The && is a command separator that terminates the sshpass command. Use quotes to ensure your desired shell command is passed to the remote host.
count=$(sshpass -p password ssh -t -q user#serverB 'cd /home/tom && ./count.sh')
I don't see anyway of producing the reported output, unless count.sh can run locally but something (are you using set -e?) prevents the following echo from executing at all.

bash while read loop stops after the first line (after corrections based on a StackExchange post) [duplicate]

The eventual goal is to have my bash script execute a command on multiple servers. I almost have it set up. My SSH authentication is working, but this simple while loop is killing me. When I execute the while loop, reading my file for host names, it works fine when I run a
ssh $HOST "uname -a"
but when I attempt to run another ssh command,
ssh $HOST "oslevel -s"
the while loop ends early! I can't figure it out. Why would the while read do loop run perfectly fine with the first command, but not when the second is added?
I have a simple text file called hosts.list that has 4 hostnames, one per line.
$ cat hosts.list
pcced1bip04
pcced1bit04
pcced1bo02
pcced1bo04
$ cat getinfo.bash
#!/bin/bash
set -x
while read HOST
do
echo $HOST
ssh $HOST "uname -a"
#ssh $HOST "oslevel -s"
echo ""
done < hosts.list`
When it runs, it works fine. It goes through the file, line by line and gets the results of "uname -a". So everything is fine, right? (Sorry, but I turned on set -x).
$ ./getinfo.bash
+ read HOST
+ echo pcced1bip04
pcced1bip04
+ ssh pcced1bip04 'uname -a'
AIX pcced1bip04 1 6 0001431BD400
+ echo ''
+ read HOST
+ echo pcced1bit04
pcced1bit04
+ ssh pcced1bit04 'uname -a'
AIX pcced1bit04 1 6 0001431BD400
+ echo ''
+ read HOST
+ echo pcced1bo02
pcced1bo02
+ ssh pcced1bo02 'uname -a'
AIX pcced1bo02 1 6 0009FE2AD400
+ echo ''
+ read HOST
+ echo pcced1bo04
pcced1bo04
+ ssh pcced1bo04 'uname -a'
AIX pcced1bo04 1 6 0009FE2AD400
+ echo ''
+ read HOST
$
The problem occurs when I enable the line [ssh $HOST "oslevel -s"]. When I do, the script only reads the first line of the file, and then stops. Why won't it go onto the other lines?
$ ./getinfo.bash
+ read HOST
+ echo pcced1bip04
pcced1bip04
+ ssh pcced1bip04 'uname -a'
AIX pcced1bip04 1 6 0001431BD400
+ ssh pcced1bip04 'oslevel -s'
6100-06-02-1044
+ echo ''
+ read HOST
$
If I had a problem with my script, why would it be working perfectly fine with just the [ssh $HOST "uname -a"] in the while loop?
If you run commands which read from stdin (such as ssh) inside a loop, you need to ensure that either:
Your loop isn't iterating over stdin
Your command has had its stdin redirected:
...otherwise, the command can consume input intended for the loop, causing it to end.
The former:
while read -u 5 -r hostname; do
ssh "$hostname" ...
done 5<file
...which, using bash 4.1 or newer, can be rewritten with automatic file descriptor assignment as so:
while read -u "$file_fd" -r hostname; do
ssh "$hostname" ...
done {file_fd}<file
The latter:
while read -r hostname; do
ssh "$hostname" ... </dev/null
done <file
...can also, for ssh alone, can also be approximated with the -n parameter (which also redirects stdin from /dev/null):
while read -r hostname; do
ssh -n "$hostname"
done <file
Assign to an array before the loop, so that you are not using stdin for your loop variables. The ssh inside the loop can then use stdin without interfering with your loop.
readarray a < hosts.list
for HOST in "${a[#]}"; do
ssh $HOST "uname -a"
#...other stuff in loop
done
As the solution specified here use -n option for ssh or open file with a different handle:
while read -u 4 HOST
do
echo $HOST
ssh $HOST "uname -a"
ssh $HOST "oslevel -s"
echo ""
done 4< hosts.list`
maybe with python XD
#!/usr/bin/python
import sys
import Queue
from subprocess import call
logfile = sys.argv[1]
q = Queue.Queue()
with open(logfile) as data:
datalines = (line.rstrip('\r\n') for line in data)
for line in datalines:
q.put(line)
while not q.empty() :
host = q.get()
print "++++++ " + host + " ++++++"
call(["ssh", host, "uname -a"])
call(["ssh", host, "oslevel -s"])
print "++++++++++++++++++++++++++"

eval printf works from command line but not in script

When I run the following command in a terminal it works, but not from a script:
eval $(printf "ssh foo -f -N "; \
for port in $(cat ~/bar.json | grep '_port' | grep -o '[0-9]\+'); do \
printf "-L $port:127.0.0.1:$port ";\
done)
The error I get tells me that printf usage is wrong, as if the -L argument within quotes would've been an argument to printf itself.
I was wondering why that is the case. Am I missing something obvious?
__
Context (in case my issue is an XY problem): I want to start and connect to a jupyter kernel running on a remote computer. To do so I wrote a small script that
sends a command per ssh for the remote to start the kernel
copies via scp a configuration file that I can use to connect to the kernel from my local computer
reads the configuration file and opens appropriate ssh tunnels between local and remote
For those not familiar with jupyter, a configuration file (bar.json) looks more or less like the following:
{
"shell_port": 35932,
"iopub_port": 37145,
"stdin_port": 42704,
"control_port": 39329,
"hb_port": 39253,
"ip": "127.0.0.1",
"key": "4cd3e12f-321bcb113c204eca3a0723d9",
"transport": "tcp",
"signature_scheme": "hmac-sha256",
"kernel_name": ""
}
And so, in my command above, the printf statement creates an ssh command with all the 5 -L port forwarding for my local computer to connect to the remote, and eval should run that command. Here's the full script:
#!/usr/bin/env bash
# Tell remote to start a jupyter kernel.
ssh foo -t 'python -m ipykernel_launcher -f ~/bar.json' &
# Wait a bit for the remote kernel to launch and write conf. file
sleep 5
# Copy the conf. file from remote to local.
scp foo:~/bar.json ~/bar.json
# Parse the conf. file and open ssh tunnels.
eval $(printf "ssh foo -f -N "; \
for port in $(cat ~/bar.json | grep '_port' | grep -o '[0-9]\+'); do \
printf "-L $port:127.0.0.1:$port ";\
done)
Finally, jupyter console --existing ~/foo.json connects to remote.
As #that other guy says, bash's printf builtin barfs on printf "-L ...". It thinks you're passing it a -L option. You can fix it by adding --:
printf -- "-L $port:127.0.0.1:$port "
Let's make that:
printf -- '-L %s:127.0.0.1:%s ' "$port" "$port"
But since we're here, we can do a lot better. First, let's not process JSON with basic shell tools. We don't want to rely on it being formatting a certain way. We can use jq, a lightweight and flexible command-line JSON processor.
$ jq -r 'to_entries | map(select(.key | test(".*_port"))) | .[].value' bar.json
35932
37145
42704
39329
39253
Here we use to_entries to convert each field to a key-value pair. Then we select entries where the .key matches the regex .*_port. Finally we extract the corresponding .values.
We can get rid of eval by constructing the ssh command in an array. It's always good to avoid eval when possible.
#!/bin/bash
readarray -t ports < <(jq -r 'to_entries | map(select(.key | test(".*_port"))) | .[].value' bar.json)
ssh=(ssh foo -f -N)
for port in "${ports[#]}"; do ssh+=(-L "$port:127.0.0.1:$port"); done
"${ssh[#]}"

how to ssh a loop over several commands

I am new to ssh so forgive me if my questions are trivial..i need to make a a remote computer execute a set of commands several times so i was thinking about making a loop using ssh ..the problem is i don't know do i save those commands in a file and loop on that file or can i like save them in ssh and just call them ..i am really troubled..also if i make a loop like this
i= 10
while i!= 0
execute command.text file ???
i--
How to i tell it to execute the file ?
Just try first on the shell in the remote machine to run the command you want.
You will find plenty of info over the internet about loops in shell/bash/csh/whatevershell:
For instance assuming bash run in the remote host (from: http://www.bashoneliners.com/ )
$ for ((i=1; i<=10; ++i)); do echo $i; done
Once you learn that, simply then take that statement to the ssh command from the machine you want to trigger the action:
$ ssh user#remotehost 'for ((i=1; i<=10; ++i)); do echo $i; done'
You can write a simple script that will execute needed commands, and path it to ssh.
For example:
script.sh, it will iterate over your bunch of commands 10 times:
for i in $(seq 10)
do
command1
command2
command3
done
and path it to remote server for execution:
$ ssh $SERVERNAME < script.sh
If you have this command.text file in which you have written all the commands in column (you can modify them with vi or vim and put them in column), you don't even need to do a loop, you can simply do:
cat command.text | awk '{print "ssh user#remotehost "$0" "}' | sh -x
For example if command.text contains:
ls -lart
cd /tmp
uname -a
This will let you do all commands written in the command.text by doing ssh user#remotehost.

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