I have search high and low and many hours for this but I really can't find.
I have gone through installing LAMP on the Instance - https://docs.aws.amazon.com/AWSEC2/latest/UserGuide/ec2-lamp-amazon-linux-2.html
All solutions ask me to install
yum install php-xml
which I did but still getting the same error. What dependencies am I missing? Help is much much appreciated!
I am using dompdf.
PHP version 7.2.11
I think you are missing -y in the command
# yum list installed | grep php-xml
# yum info php-xml
Available Packages
Name : php-xml
Arch : x86_64
Version : 5.3.3
Release : 40.el6_6
Size : 106 k
Repo : updates
Summary : A module for PHP applications which use XML
URL : http://www.php.net/
License : PHP
Description : The php-xml package contains dynamic shared objects which add support
: to PHP for manipulating XML documents using the DOM tree,
: and performing XSL transformations on XML documents.
# yum install -y php-xml
Related
I tried to install dgl(https://github.com/dmlc/dgl)
There were several ways to install it.(https://docs.dgl.ai/install/index.html#install-from-source)
pip
conda
from git source
from whl
and I failed with error message when I tried pip
$ pip install dgl-cu101
ERROR: Could not find a version that satisfies the requirement dgl-cu101 (from versions: none)
ERROR: No matching distribution found for dgl-cu101
even pip search spot the package
$ pip search dgl
dgl (0.4.1) - Deep Graph Library
dgl-bots.py (1.1.0) - A python wrapper for https://bots.discord.gl
dgl-cu100 (0.4.1) - Deep Graph Library
dgl-cu92 (0.4.1) - Deep Graph Library
dgl-cu90 (0.4.1) - Deep Graph Library
dgl-cu101 (0.4.1) - Deep Graph Library
dgl-cu102 (0.5a200108) - Deep Graph Library
conda also does not work
$ conda install -c dglteam dgl-cuda10.1
Solving environment: failed
PackagesNotFoundError:
The following packages are not available from current channels:
- dgl-cuda10.1
Current channels:
- https://conda.anaconda.org/dglteam/linux-ppc64le
- https://conda.anaconda.org/dglteam/noarch
- https://repo.anaconda.com/pkgs/main/linux-ppc64le
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/free/linux-ppc64le
- https://repo.anaconda.com/pkgs/free/noarch
- https://repo.anaconda.com/pkgs/r/linux-ppc64le
- https://repo.anaconda.com/pkgs/r/noarch
- https://repo.anaconda.com/pkgs/pro/linux-ppc64le
- https://repo.anaconda.com/pkgs/pro/noarch
- https://conda.anaconda.org/conda-forge/linux-ppc64le
- https://conda.anaconda.org/conda-forge/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
install with source code is not available option because I am the remote client to the server and has no root access
install with whl seems nice but also occurred error.(https://pypi.org/project/dgl/#files)
$ pip install dgl_cu101-0.4.1-cp37-cp37m-manylinux1_x86_64.whl
ERROR: dgl_cu101-0.4.1-cp37-cp37m-manylinux1_x86_64.whl is not a supported wheel on this platform.
I read almost every articles and most of them said it would be the environment problem,
but as far as I know, they match!
My env server
CentOS 7
python 3.7
64 bit
minsky
4 GPUs
designed for ML
My env client
macos
iterm2
no root access
access from different city
How can I solve this problem?
Please help.
Your conda channel
https://conda.anaconda.org/dglteam/linux-ppc64le
gives the clue. Your system seems to be based on a ppc64le CPU, not the most frequently seen x86_64.
As you can see On the conda page, only linux-64 (i.e. x86_64) is available. Same goes for the pypi project.
So your setup does not match.
install with source code is not available option because I am the remote client to the server and has no root access
You should not need root access to compile the source code. The requirements listed in the guide are
gcc-c++ python3-devel make cmake
which, if not available yet could be installed using conda:
conda install -c conda-forge make cmake libgcc
I have installed bioconda following the instructions at https://bioconda.github.io/user/install.html#set-up-channels. Then I tried
conda install bwa
conda install bcftools
conda install plink2
They all installed fine. However, when I tried
conda install bcftools-gtc2vcf-plugin
or
conda install -c bioconda bcftools-gtc2vcf-plugin
as instructed at https://bioconda.github.io/recipes/bcftools-gtc2vcf-plugin/README.html, I got errors as follows:
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
- bcftools-gtc2vcf-plugin
Current channels:
- https://conda.anaconda.org/bioconda/osx-64
- https://conda.anaconda.org/bioconda/noarch
- https://conda.anaconda.org/conda-forge/osx-64
- https://conda.anaconda.org/conda-forge/noarch
- https://repo.anaconda.com/pkgs/main/osx-64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/osx-64
- https://repo.anaconda.com/pkgs/r/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
Any help would be highly appreciated.
Thanks in advance!
I would advise (as of 2020-01-06) not to use the bcftools-gtc2vcf-plugin as it is an old version missing many features compared to the current version. I would advise either to compile from source (https://github.com/freeseek/gtc2vcf) or alternatively to download pre-compiled binaries (https://personal.broadinstitute.org/giulio/gtc2vcf) that should work on systems with ≥GLIBC_2.3 installed (and making sure you are running the latest version of BCFtools)
If you get the error:
No functional bcftools plugins were found in
BCFTOOLS_PLUGINS="/Users/moxu/xbin/seq/bcftools/plugins".
- Is the plugin path correct?
- Run "bcftools plugin -lv" for more detailed error output.
Could not load "gtc2vcf".
(a bcftools plugin bug that the maintainers will fix soon), can you try to run one of the following commands instead:
$ bcftools plugin gtc2vcf -vv
$ bcftools +gtc2vcf -vv
$ bcftools plugin /Users/moxu/xbin/seq/bcftools/plugins/gtc2vcf.so -vv
$ bcftools +/Users/moxu/xbin/seq/bcftools/plugins/gtc2vcf.so -vv
You should get a reason for why the plugin is not loading. A typical error message could look like this:
/Users/moxu/xbin/seq/bcftools/plugins/gtc2vcf.so:
dlopen .. /lib64/libc.so.6: version `GLIBC_2.3' not found (required by /Users/moxu/xbin/seq/bcftools/plugins/gtc2vcf.so)
I am struggling to install packages, and "sub-packages" in Jupyter Notebook; I suspect I am missing some of the basic concepts around installing packages.
I understand that to install a package within the notebook I use
! pip install --user <package>
What I don't understand is how to install a "sub-package" (feel free to advise what the correct terminology is) such as below.
from nltk.tagger import *
Here is the original script that this comes from:
If i try :
!pip install nltk.tagger
I get the following error information / error
Collecting nltk.tagger
Could not find a version that satisfies the requirement nltk.tagger (from versions: ) No matching distribution found for nltk.tagger
So my first question is. How do I install this nltk.tagger subpackage? Also if tagger is a sub-package of NLTK, how come it isn't installed when I do a pip install NLTK?
Although the error mentions a version, searching online I can't find a reference even to the subpackage "tagger". Any advice or links explaining this would be appreciated.
if you pip inslall nltk, the subpackage nltk.tagger, and other dependencies will be installed too.
This is generally true for all packages.
I am installing Oracle 11g on the my system RHEL7.2 64bit,But in this step,I can not continue to install it,Because I can not find a file on my system,It is 'libgmp.so.3'.
So,like the picture,I can not install anything else.Because I had installed a higher level 'gmp' on my system.It is useless when I make a softlink to a higher level file.
What can I do?
try
yum clean all
this is will clear the yum cache .
Try first install mpfr-2.4.1-6.el6.x86_64.rpm
See http://www.oracle.com/technetwork/articles/servers-storage-admin/ginnydbinstallonlinux-488779.html. (It is for Oracle Linux 6.0, but it describes your problem)
# yum install oracle-rdbms-server-11gR2-preinstall
........
---> Package mpfr.x86_64 0:2.4.1-6.el6 will be installed
--> Running transaction check
---> Package kernel-uek-headers.x86_64 0:2.6.32-300.32.1.el6uek will be installed
---> Package ppl.x86_64 0:0.10.2-11.el6 will be installed
Also see brief installation guide how to install libraries https://oracle-base.com/articles/11g/oracle-db-11gr2-installation-on-oracle-linux-7
And of course big installation guide if nothing has helped https://docs.oracle.com/cd/E11882_01/install.112/e24326/toc.htm#BHCFACHG
When I try to install DataNode in hadoop server it says gthe following error,
Fail: Execution of '/usr/bin/yum -d 0 -e 0 -y install snappy-devel' returned 1. Error: Package: snappy-devel-1.0.5-1.el6.x86_64 (HDP-UTILS-1.1.0.19)
Requires: snappy(x86-64) = 1.0.5-1.el6
Installed: snappy-1.1.0-1.el6.x86_64 (#anaconda-CentOS-201311272149.x86_64/6.5)
snappy(x86-64) = 1.1.0-1.el6
Available: snappy-1.0.5-1.el6.x86_64 (HDP-UTILS-1.1.0.19)
snappy(x86-64) = 1.0.5-1.el6
So can anyone help me to resolve this?
Thank You.
Requires: snappy(x86-64) = 1.0.5-1.el6 <=== This line indicates that the 1.0.5-1.el6 version of snappy is required.
Installed: snappy-1.1.0-1.el6.x86_64 (#anaconda-CentOS-201311272149.x86_64/6.5) <== This line says that the 1.1.0-1.el6.x86_64 version is already installed.
Therefore, you have a newer version of the snappy package installed, which is causing this issue.Hadoop requires the snappy-devel package that is a lower version that what is on the machine already. Run the following on the host and retry.
yum remove snappy
yum install snappy-devel
I got over this problem by deleting the already installed package snappy.
for centos you can use the command
yum remove snappy