GCC : undefined reference to "__asan_init_v1" - gcc

I want to compile my C99 project with the flag -fsanitize=address. I need to use CMake and to compile with gcc on a Centos 7 distribution.
I currently have gcc 7.3.1 and cmake 3.13.4.
I added the -fsanitize=address flag in the compilation flags list and in the linker, but it still fails to compile with the following error:
[ 6%] Building C object CMakeFiles/last.dir/src/ast/ast.c.o
[ 13%] Building C object CMakeFiles/last.dir/src/ast/ast_printer.c.o
[ 20%] Building C object CMakeFiles/last.dir/src/ast/cleaner.c.o
[ 26%] Linking C static library liblast.a
[ 26%] Built target last
[ 33%] Building C object CMakeFiles/lexecution.dir/src/execution/exec_parser.c.o
[ 40%] Building C object CMakeFiles/lexecution.dir/src/execution/exec_utils.c.o
[ 46%] Building C object CMakeFiles/lexecution.dir/src/execution/exec_func.c.o
[ 53%] Building C object CMakeFiles/lexecution.dir/src/execution/exec_parser_options.c.o
[ 60%] Linking C static library liblexecution.a
[ 60%] Built target lexecution
[ 66%] Building C object CMakeFiles/lutils.dir/tests/utils/utils.c.o
[ 73%] Linking C static library liblutils.a
[ 73%] Built target lutils
[ 80%] Building C object CMakeFiles/lhist.dir/src/history/history.c.o
[ 86%] Linking C static library liblhist.a
[ 86%] Built target lhist
[ 93%] Building C object CMakeFiles/42sh.dir/src/execution/exec_42sh.c.o
[100%] Linking C executable 42sh
/usr/lib/gcc/x86_64-redhat-linux/4.8.5/libasan_preinit.o:(.preinit_array+0x0) : undefined reference to « __asan_init_v1 »
CMakeFiles/42sh.dir/src/execution/exec_42sh.c.o : In function « _GLOBAL__sub_I_00099_1_flag » :
/home/lyro/Documents/customshell/src/execution/exec_42sh.c:304 : undefined reference to « __asan_init_v1 »
liblexecution.a(exec_parser.c.o) : In function « _GLOBAL__sub_I_00099_1_parser_new_from_string » :
/home/lyro/Documents/customshell/src/execution/exec_parser.c:1105 : undefined reference to « __asan_init_v1 »
liblexecution.a(exec_utils.c.o) : In function « _GLOBAL__sub_I_00099_0_get_args_array » :
/home/lyro/Documents/customshell/src/execution/exec_utils.c:242 : undefined reference to « __asan_init_v1 »
liblexecution.a(exec_func.c.o) : In function « _GLOBAL__sub_I_00099_1_exec_ast » :
/home/lyro/Documents/customshell/src/execution/exec_func.c:187 : undefined reference to « __asan_init_v1 »
liblexecution.a(exec_parser_options.c.o):/home/lyro/Documents/customshell/src/execution/exec_parser_options.c:149 : more undefined references to « __asan_init_v1 »
collect2: error: ld returned 1 execution state code
make[2]: *** [42sh] Error 1
make[1]: *** [CMakeFiles/42sh.dir/all] Error 2
make: *** [all] Error 2
Here is my CMakeLists.txt file, I can't find what I am missing..
cmake_minimum_required(VERSION 3.0)
project(42SH LANGUAGES C)
add_compile_options(-Wall -Wextra -Werror -pedantic -fsanitize=address -g -std=c99)
add_library(last ${CMAKE_SOURCE_DIR}/src/ast/ast.c ${CMAKE_SOURCE_DIR}/src/ast/ast_printer.c ${CMAKE_SOURCE_DIR}/src/ast/cleaner.c)
target_include_directories(last PUBLIC ${CMAKE_SOURCE_DIR}/src/ast)
add_library(lutils ${CMAKE_SOURCE_DIR}/tests/utils/utils.c)
target_include_directories(lutils PUBLIC ${CMAKE_SOURCE_DIR}/tests/utils)
target_link_libraries(lutils -fsanitize=address lexecution)
add_library(lexecution ${CMAKE_SOURCE_DIR}/src/execution/exec_parser.c ${CMAKE_SOURCE_DIR}/src/execution/exec_utils.c ${CMAKE_SOURCE_DIR}/src/execution/exec_func.c ${CMAKE_SOURCE_DIR}/src/execution/exec_parser_options.c)
target_include_directories(lexecution PUBLIC ${CMAKE_SOURCE_DIR}/src/ast)
target_link_libraries(lexecution -fsanitize=address last)
add_library(lhist ${CMAKE_SOURCE_DIR}/src/history/history.c)
target_include_directories(lhist PUBLIC ${CMAKE_SOURCE_DIR}/src/history)
add_executable(42sh src/execution/exec_42sh.c)
target_link_libraries(42sh -fsanitize=address lexecution)
target_link_libraries(42sh -fsanitize=address lutils)
target_link_libraries(42sh -fsanitize=address last)
target_link_libraries(42sh -fsanitize=address lhist)
add_custom_target(submit
COMMENT "Compiled for submission. Sanitizers ON."
COMMENT "Don't use Valgrind on this executable. It will not work."
DEPENDS 42sh
)
add_custom_target(tests
COMMAND pytest ${CMAKE_SOURCE_DIR}/tests
COMMENT "Running testsuite..."
DEPENDS 42sh
)
add_custom_target(doc
COMMENT "Compiling documentation"
COMMAND doxygen ${CMAKE_SOURCE_DIR}/doc/Doxyfile
COMMENT "Compiled documentation"
)

Your toolchain is somewhat confused about which version of GCC it is and
the linkage failure is one consequence of that confusion.
You tell us you are using GCC 7.3.1, but the first of the unresolved references to __asan_init_v1:
/usr/lib/gcc/x86_64-redhat-linux/4.8.5/libasan_preinit.o:(.preinit_array+0x0) : undefined reference to « __asan_init_v1
shows that the gcc that invoked the linkage with -fsanitize=address linked the address santitizer initialization code
from your installation of GCC 4.8.5.
In GCC 7, the file libasan_preinit.o makes no references to __asan_init_v1, as seen on
the laptop I'm working on just now:
$ nm /usr/lib/gcc/x86_64-linux-gnu/7/libasan_preinit.o
U __asan_init
0000000000000000 D __local_asan_preinit
It calls __asan_init, which is indeed defined in the toolchain's libasan:
$ nm -D /usr/lib/gcc/x86_64-linux-gnu/7/libasan.so | grep __asan_init
00000000000ecdb0 T __asan_init
On the other hand, in GCC 4.8.5, libasan did not define the function __asan_init
and did define __asan_init_v1:
:~/Downloads/gcc-4.8.5$ grep -r '__asan_init_v'
gcc/ChangeLog: * sanitizer.def: Rename __asan_init to __asan_init_v1.
gcc/sanitizer.def:DEF_SANITIZER_BUILTIN(BUILT_IN_ASAN_INIT, "__asan_init_v1",
libsanitizer/asan/asan_interface_internal.h: void __asan_init_v1() SANITIZER_INTERFACE_ATTRIBUTE;
libsanitizer/asan/asan_interface_internal.h: #define __asan_init __asan_init_v1
There, __asan_init was just an internal #define aliasing the real function __asan_init_v1, as
per libsanitizer/asan/asan_interface_internal.h, but in that file in GCC 7
// This function should be called at the very beginning of the process,
// before any instrumented code is executed and before any call to malloc.
SANITIZER_INTERFACE_ATTRIBUTE void __asan_init();
it is a real function, as reported by nm.
So the thrust of the evidence is that you are linking against the libasan of GCC 7.3.1
but also linking the library initialization code of GCC 4.8.5. I have no visibility of
how you've landed in this GCC version mash-up - could be a packaging bug, for all I know - but
you'll have to fix that to solve these linkage failures.

Related

Crosstool-ng g++ not compiling c++11 std::current_exception

I build a gcc toolchain using Crosstool-ng, but the resulting g++ does not compile and/or link C++11 exceptions.
If I try to compile:
#include <exception>
int main()
{
std::current_exception();
}
via:
arm-none-linux-gnueabihf-g++ -std=c++11 foo.cpp
I get:
foo.cpp: In function 'int main()':
foo.cpp:5:9: error: 'current_exception' is not a member of 'std'
std::current_exception();
^~~
However, if I additionally provide cortex-a9 as cpu the haviour changes:
arm-none-linux-gnueabihf-g++ -mcpu=cortex-a9 -std=c++11 foo.cpp
results in:
/tmp/cc13AEjE.o: In function `main':
foo.cpp:(.text+0x14): undefined reference to `std::current_exception()'
foo.cpp:(.text+0x20): undefined reference to
`std::__exception_ptr::exception_ptr::~exception_ptr()'
collect2: error: ld returned 1 exit status
I greped within the toolchain for current_exception and it seems good for me:
grep -r -e current_exception arm-none-linux-gnueabihf/
Binary file arm-none-linux-gnueabihf/arm-none-linux-gnueabihf/sysroot/lib/libstdc++.so.6.0.22 matches
Binary file arm-none-linux-gnueabihf/arm-none-linux-gnueabihf/sysroot/lib/libstdc++.a matches
Binary file arm-none-linux-gnueabihf/arm-none-linux-gnueabihf/sysroot/lib/libsupc++.a matches
arm-none-linux-gnueabihf/arm-none-linux-gnueabihf/include/c++/6.3.0/cxxabi.h: __cxa_current_exception_type() _GLIBCXX_NOTHROW __attribute__ ((__pure__));
arm-none-linux-gnueabihf/arm-none-linux-gnueabihf/include/c++/6.3.0/future: (*_M_result)->_M_error = current_exception();
arm-none-linux-gnueabihf/arm-none-linux-gnueabihf/include/c++/6.3.0/future: (*_M_result)->_M_error = current_exception();
arm-none-linux-gnueabihf/arm-none-linux-gnueabihf/include/c++/6.3.0/bits/exception_ptr.h: exception_ptr current_exception() _GLIBCXX_USE_NOEXCEPT;
arm-none-linux-gnueabihf/arm-none-linux-gnueabihf/include/c++/6.3.0/bits/exception_ptr.h: friend exception_ptr std::current_exception() _GLIBCXX_USE_NOEXCEPT;
arm-none-linux-gnueabihf/arm-none-linux-gnueabihf/include/c++/6.3.0/bits/exception_ptr.h: return current_exception();
arm-none-linux-gnueabihf/arm-none-linux- gnueabihf/include/c++/6.3.0/bits/nested_exception.h: nested_exception() noexcept : _M_ptr(current_exception()) { }
The settings I used for Crosstool-ng are:
arm-none-linux-gnueabihf/bin/arm-none-linux-gnueabihf-g++ -v
Using built-in specs.
COLLECT_GCC=x-tools/arm-none-linux-gnueabihf/bin/arm-none-linux-gnueabihf-g++
COLLECT_LTO_WRAPPER=/home/builduser/x-tools/arm-none-linux-gnueabihf/libexec/gcc/arm-none-linux-gnueabihf/6.3.0/lto-wrapper
Target: arm-none-linux-gnueabihf
Configured with: /home/builduser/build/.build/src/gcc-6.3.0/configure
--build=x86_64-build_pc-linux-gnu
--host=x86_64-build_pc-linux-gnu
--target=arm-none-linux-gnueabihf
--prefix=/home/builduser/x-tools/arm-none-linux-gnueabihf
--with-sysroot=/home/builduser/x-tools/arm-none-linux-gnueabihf/arm-none-linux-gnueabihf/sysroot
--enable-languages=c,c++
--with-float=hard
--with-pkgversion='crosstool-NG crosstool-ng-1.23.0'
--disable-sjlj-exceptions
--enable-__cxa_atexit
--disable-libmudflap
--disable-libgomp
--disable-libssp
--disable-libquadmath
--disable-libquadmath-support
--disable-libsanitizer
--disable-libmpx
--with-gmp=/home/builduser/build/.build/arm-none-linux-gnueabihf/buildtools
--with-mpfr=/home/builduser/build/.build/arm-none-linux-gnueabihf/buildtools
--with-mpc=/home/builduser/build/.build/arm-none-linux-gnueabihf/buildtools
--with-isl=/home/builduser/build/.build/arm-none-linux-gnueabihf/buildtools
--disable-lto
--with-host-libstdcxx='-static-libgcc -Wl,-Bstatic,-lstdc++ -lm'
--enable-threads=posix
--enable-target-optspace
--disable-plugin
--disable-nls
--disable-multilib
--with-local-prefix=/home/builduser/x-tools/arm-none-linux-gnueabihf/arm-none-linux-gnueabihf/sysroot
--enable-long-long
Thread model: posix
gcc version 6.3.0 (crosstool-NG crosstool-ng-1.23.0)
Building a std::array example works fine.
EDIT:
If I include the CT_ARCH_CPU="cortex-a9" option to my crostool-ng configuration (which leads to a --with-cpu=cortex-a9 within g++) the std::current_exception example works fine.
So the question is:
Why does the cpu variant the compiler should generate code for and the way the cpu variant is told to the toolchain (-mcpu at runtime vs. inbuild --with-cpu) is influencing the ability to compile/link std::current_exception?

undefined reference to__aeabi_ldivmod when building kernel for arm32

When building one kernel image for arm32 platform, in the final linking, the error is:
arm-eabi-ld -EL -p --no-undefined -X --build-id -o .tmp_vmlinux1 -T obj/KERNEL/arch/arm/kernel/vmlinux.lds arch/arm/kernel/head.o init/built-in.o --start-group usr/built-in.o arch/arm/vfp/built-in.o arch/arm/kernel/built-in.o arch/arm/mm/built-in.o arch/arm/common/built-in.o arch/arm/net/built-in.o arch/arm/crypto/built-in.o arch/arm/mach-sc/built-in.o kernel/built-in.o mm/built-in.o fs/built-in.o ipc/built-in.o security/built-in.o crypto/built-in.o block/built-in.o arch/arm/lib/lib.a lib/lib.a arch/arm/lib/built-in.o lib/built-in.o drivers/built-in.o sound/built-in.o firmware/built-in.o arch/arm/oprofile/built-in.o net/built-in.o --end-group
drivers/built-in.o:
undefined reference to `__aeabi_ldivmod'
make[2]: *** [vmlinux] Error 1
I know the reason is my using 64bit divison for arm32 which 64bit is not supported, and using do_div() can get rid of the __aeabi_ldivmod error. I know __aeabi_ldivmod is defined in the libgcc.a, so I added the following code in my Kernel Makefile:
--- a/Makefile
+++ b/Makefile
## -677,6 +677,7 ##
LDFLAGS_BUILD_ID = $(patsubst -Wl$(comma)%,%,\
$(call cc-ldoption, -Wl$(comma)--build-id,))
KBUILD_LDFLAGS_MODULE += $(LDFLAGS_BUILD_ID)
LDFLAGS_vmlinux += $(LDFLAGS_BUILD_ID)
+LDFLAGS_vmlinux += -L$(MY_LIBPATH) -lgcc
But it still can't work, so can anybody help on my questions:
1) Why the libgcc.a is not linked default in the kernel building?
2) How to link the libgcc.a to fix the link error?
[Update]
OK, I found the following note for -lgcc in OSDev wiki:
-lgcc
You disable the important libgcc library when you pass -nodefaultlibs (implied by -nostdlib). The compiler needs this library for many operations that it cannot do itself or that is more efficient to put into a shared function. You must pass this library near the end of the link line, after all the other object files and libraries, or the linker won't use it and you get strange linker errors.
So I hard coded -L${MYLIB_PATH} -lgcc into into scripts/link-vmlinux.sh:
--- a/scripts/link-vmlinux.sh
+++ b/scripts/link-vmlinux.sh
## -55,7 +55,7 ## vmlinux_link()
if [ "${SRCARCH}" != "um" ]; then
${LD} ${LDFLAGS} ${LDFLAGS_vmlinux} -o ${2} \
-T ${lds} ${KBUILD_VMLINUX_INIT} \
- --start-group ${KBUILD_VMLINUX_MAIN} --end-group ${1}
+ --start-group ${KBUILD_VMLINUX_MAIN} --end-group ${1} -L${MYLIB_PATH} -lgcc
else
${CC} ${CFLAGS_vmlinux} -o ${2} \
-Wl,-T,${lds} ${KBUILD_VMLINUX_INIT} \
Then the build went without __aeabi_ldivmod error.
While I want to find the better modifying than just harding coding and to know why kernel doesn't link libgcc default.
Don't edit scripts/link-vmlinux.sh, edit only certain Makefiles. For example if you have this error:
drivers/power/reset/msm-poweroff.c:249: undefined reference to `lge_set_restart_reason'
run cscope -R inside top of linux kernel source code directory, then find global definition for lge_set_restart_reason, it finds file definition in include/soc/qcom/lge/lge_handle_panic.h
But lge_handle_panic.h has only definition of lge_set_restart_reason, you need lge_handle_panic.c, which has this function, looking like this:
void lge_set_restart_reason(unsigned int reason)
{
writel_relaxed(reason, RESTART_REASON);
if(use_hardreset) {
qpnp_pon_set_restart_reason(map_imem_reboot_to_pmic(reason));
qpnp_pon_system_pwr_off(PON_POWER_OFF_HARD_RESET);
}
}
so you need to edit drivers/power/reset/Makefile to include lge_handle_panic.o object file:
obj-$(CONFIG_POWER_RESET_MSM) += msm-poweroff.o lge_handle_panic.o
In custom kernels, a lot of functions is enabled by config, what I mean is:
#ifdef CONFIG_LGE_HANDLE_PANIC
static void __iomem *msm_timer0_base;
void __iomem *wdt_timer_get_timer0_base(void)
{
return msm_timer0_base;
}
static void wdt_timer_set_timer0_base(void __iomem * iomem)
{
msm_timer0_base = iomem;
}
#endif
You need enable CONFIG_LGE_HANDLE_PANIC, or any config if you have again this error, or remove "ifdef" and "endif" (I'm not recommending doing this)

MPFR 3.1.3 fails with "illegal thread local variable reference to regular symbol" on Mac + Intel 15

I downloaded MPFR 3.1.3 from http://www.mpfr.org/mpfr-current/ and attempted to compile with Intel 15 (icc --version returns icc (ICC) 15.0.3 20150408) on Mac Yosemite (10.10.4).
The build fails at this point:
jrhammon-mac01:build jrhammon$ make
Making all in doc
make[1]: Nothing to be done for `all'.
Making all in src
/Applications/Xcode.app/Contents/Developer/usr/bin/make all-am
/bin/sh ../libtool --tag=CC --mode=link icc -Wall -Wmissing-prototypes -Wpointer-arith -fp_port -mp -wd1572 -wd265 -wd186 -wd239 -g -O2 -version-info 5:3:1 -Wl,-search_paths_first -o libmpfr.la -rpath /usr/local/lib exceptions.lo extract.lo uceil_exp2.lo uceil_log2.lo ufloor_log2.lo add.lo add1.lo add_ui.lo agm.lo clear.lo cmp.lo cmp_abs.lo cmp_si.lo cmp_ui.lo comparisons.lo div_2exp.lo div_2si.lo div_2ui.lo div.lo div_ui.lo dump.lo eq.lo exp10.lo exp2.lo exp3.lo exp.lo frac.lo frexp.lo get_d.lo get_exp.lo get_str.lo init.lo inp_str.lo isinteger.lo isinf.lo isnan.lo isnum.lo const_log2.lo log.lo modf.lo mul_2exp.lo mul_2si.lo mul_2ui.lo mul.lo mul_ui.lo neg.lo next.lo out_str.lo printf.lo vasprintf.lo const_pi.lo pow.lo pow_si.lo pow_ui.lo print_raw.lo print_rnd_mode.lo reldiff.lo round_prec.lo set.lo setmax.lo setmin.lo set_d.lo set_dfl_prec.lo set_exp.lo set_rnd.lo set_f.lo set_prc_raw.lo set_prec.lo set_q.lo set_si.lo set_str.lo set_str_raw.lo set_ui.lo set_z.lo sqrt.lo sqrt_ui.lo sub.lo sub1.lo sub_ui.lo rint.lo ui_div.lo ui_sub.lo urandom.lo urandomb.lo get_z_exp.lo swap.lo factorial.lo cosh.lo sinh.lo tanh.lo sinh_cosh.lo acosh.lo asinh.lo atanh.lo atan.lo cmp2.lo exp_2.lo asin.lo const_euler.lo cos.lo sin.lo tan.lo fma.lo fms.lo hypot.lo log1p.lo expm1.lo log2.lo log10.lo ui_pow.lo ui_pow_ui.lo minmax.lo dim.lo signbit.lo copysign.lo setsign.lo gmp_op.lo init2.lo acos.lo sin_cos.lo set_nan.lo set_inf.lo set_zero.lo powerof2.lo gamma.lo set_ld.lo get_ld.lo cbrt.lo volatile.lo fits_sshort.lo fits_sint.lo fits_slong.lo fits_ushort.lo fits_uint.lo fits_ulong.lo fits_uintmax.lo fits_intmax.lo get_si.lo get_ui.lo zeta.lo cmp_d.lo erf.lo inits.lo inits2.lo clears.lo sgn.lo check.lo sub1sp.lo version.lo mpn_exp.lo mpfr-gmp.lo mp_clz_tab.lo sum.lo add1sp.lo free_cache.lo si_op.lo cmp_ld.lo set_ui_2exp.lo set_si_2exp.lo set_uj.lo set_sj.lo get_sj.lo get_uj.lo get_z.lo iszero.lo cache.lo sqr.lo int_ceil_log2.lo isqrt.lo strtofr.lo pow_z.lo logging.lo mulders.lo get_f.lo round_p.lo erfc.lo atan2.lo subnormal.lo const_catalan.lo root.lo sec.lo csc.lo cot.lo eint.lo sech.lo csch.lo coth.lo round_near_x.lo constant.lo abort_prec_max.lo stack_interface.lo lngamma.lo zeta_ui.lo set_d64.lo get_d64.lo jn.lo yn.lo rem1.lo get_patches.lo add_d.lo sub_d.lo d_sub.lo mul_d.lo div_d.lo d_div.lo li2.lo rec_sqrt.lo min_prec.lo buildopt.lo digamma.lo bernoulli.lo isregular.lo set_flt.lo get_flt.lo scale2.lo set_z_exp.lo ai.lo gammaonethird.lo grandom.lo -lgmp
libtool: link: icc -dynamiclib -Wl,-undefined -Wl,dynamic_lookup -o .libs/libmpfr.4.dylib .libs/exceptions.o .libs/extract.o .libs/uceil_exp2.o .libs/uceil_log2.o .libs/ufloor_log2.o .libs/add.o .libs/add1.o .libs/add_ui.o .libs/agm.o .libs/clear.o .libs/cmp.o .libs/cmp_abs.o .libs/cmp_si.o .libs/cmp_ui.o .libs/comparisons.o .libs/div_2exp.o .libs/div_2si.o .libs/div_2ui.o .libs/div.o .libs/div_ui.o .libs/dump.o .libs/eq.o .libs/exp10.o .libs/exp2.o .libs/exp3.o .libs/exp.o .libs/frac.o .libs/frexp.o .libs/get_d.o .libs/get_exp.o .libs/get_str.o .libs/init.o .libs/inp_str.o .libs/isinteger.o .libs/isinf.o .libs/isnan.o .libs/isnum.o .libs/const_log2.o .libs/log.o .libs/modf.o .libs/mul_2exp.o .libs/mul_2si.o .libs/mul_2ui.o .libs/mul.o .libs/mul_ui.o .libs/neg.o .libs/next.o .libs/out_str.o .libs/printf.o .libs/vasprintf.o .libs/const_pi.o .libs/pow.o .libs/pow_si.o .libs/pow_ui.o .libs/print_raw.o .libs/print_rnd_mode.o .libs/reldiff.o .libs/round_prec.o .libs/set.o .libs/setmax.o .libs/setmin.o .libs/set_d.o .libs/set_dfl_prec.o .libs/set_exp.o .libs/set_rnd.o .libs/set_f.o .libs/set_prc_raw.o .libs/set_prec.o .libs/set_q.o .libs/set_si.o .libs/set_str.o .libs/set_str_raw.o .libs/set_ui.o .libs/set_z.o .libs/sqrt.o .libs/sqrt_ui.o .libs/sub.o .libs/sub1.o .libs/sub_ui.o .libs/rint.o .libs/ui_div.o .libs/ui_sub.o .libs/urandom.o .libs/urandomb.o .libs/get_z_exp.o .libs/swap.o .libs/factorial.o .libs/cosh.o .libs/sinh.o .libs/tanh.o .libs/sinh_cosh.o .libs/acosh.o .libs/asinh.o .libs/atanh.o .libs/atan.o .libs/cmp2.o .libs/exp_2.o .libs/asin.o .libs/const_euler.o .libs/cos.o .libs/sin.o .libs/tan.o .libs/fma.o .libs/fms.o .libs/hypot.o .libs/log1p.o .libs/expm1.o .libs/log2.o .libs/log10.o .libs/ui_pow.o .libs/ui_pow_ui.o .libs/minmax.o .libs/dim.o .libs/signbit.o .libs/copysign.o .libs/setsign.o .libs/gmp_op.o .libs/init2.o .libs/acos.o .libs/sin_cos.o .libs/set_nan.o .libs/set_inf.o .libs/set_zero.o .libs/powerof2.o .libs/gamma.o .libs/set_ld.o .libs/get_ld.o .libs/cbrt.o .libs/volatile.o .libs/fits_sshort.o .libs/fits_sint.o .libs/fits_slong.o .libs/fits_ushort.o .libs/fits_uint.o .libs/fits_ulong.o .libs/fits_uintmax.o .libs/fits_intmax.o .libs/get_si.o .libs/get_ui.o .libs/zeta.o .libs/cmp_d.o .libs/erf.o .libs/inits.o .libs/inits2.o .libs/clears.o .libs/sgn.o .libs/check.o .libs/sub1sp.o .libs/version.o .libs/mpn_exp.o .libs/mpfr-gmp.o .libs/mp_clz_tab.o .libs/sum.o .libs/add1sp.o .libs/free_cache.o .libs/si_op.o .libs/cmp_ld.o .libs/set_ui_2exp.o .libs/set_si_2exp.o .libs/set_uj.o .libs/set_sj.o .libs/get_sj.o .libs/get_uj.o .libs/get_z.o .libs/iszero.o .libs/cache.o .libs/sqr.o .libs/int_ceil_log2.o .libs/isqrt.o .libs/strtofr.o .libs/pow_z.o .libs/logging.o .libs/mulders.o .libs/get_f.o .libs/round_p.o .libs/erfc.o .libs/atan2.o .libs/subnormal.o .libs/const_catalan.o .libs/root.o .libs/sec.o .libs/csc.o .libs/cot.o .libs/eint.o .libs/sech.o .libs/csch.o .libs/coth.o .libs/round_near_x.o .libs/constant.o .libs/abort_prec_max.o .libs/stack_interface.o .libs/lngamma.o .libs/zeta_ui.o .libs/set_d64.o .libs/get_d64.o .libs/jn.o .libs/yn.o .libs/rem1.o .libs/get_patches.o .libs/add_d.o .libs/sub_d.o .libs/d_sub.o .libs/mul_d.o .libs/div_d.o .libs/d_div.o .libs/li2.o .libs/rec_sqrt.o .libs/min_prec.o .libs/buildopt.o .libs/digamma.o .libs/bernoulli.o .libs/isregular.o .libs/set_flt.o .libs/get_flt.o .libs/scale2.o .libs/set_z_exp.o .libs/ai.o .libs/gammaonethird.o .libs/grandom.o -lgmp -mp -g -O2 -Wl,-search_paths_first -mp -install_name /usr/local/lib/libmpfr.4.dylib -compatibility_version 6 -current_version 6.3 -Wl,-single_module
icc: command line remark #10148: option '-mp' not supported
icc: command line remark #10148: option '-mp' not supported
ld: illegal thread local variable reference to regular symbol __tls___mpfr_allocate_func for architecture x86_64
make[2]: *** [libmpfr.la] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1
I have never seen this error before. Is it a bug in MPFR, the Intel compiler or the Mac toolchain? I am using the system install of GMP (from Homebrew), which I assume is built with Clang, not Intel. Is there a C ABI incompatibility issue here with TLS?
I found https://github.com/feeley/gambit/issues/109 and https://trac.mpich.org/projects/mpich/ticket/1547, which suggest that it is a Mac issue, but I am able to build with CC=clang so I guess it has something to do with Intel.
I have got MPFR to build in the past with Intel compilers, but (apparently) had to apply this patch: https://github.com/hpcugent/easybuild-easyconfigs/blob/master/easybuild/easyconfigs/m/MPFR/MPFR_ictce_remove-deprecated-mp.patch .
Maybe the warnings you're getting aren't so harmless as they seem.

sparse - Fixing build warnings

I'm compiling the sparse - linux kernel checking tool.
But it throws the following warning:
lovegcy#knltest-VirtualBox:~/git_root/sparse$ make
GEN version.h
/bin/sh: 1: llvm-config: not found
Makefile:63: Your system does not have libxml, disabling c2xml
Makefile:75: Your system does not have libgtk2, disabling test-inspect
Makefile:79: Your system does not have llvm, disabling sparse-llvm
CC test-lexing.o
CC target.o
CC parse.o
CC tokenize.o
CC pre-process.o
CC symbol.o
CC lib.o
CC scope.o
CC expression.o
CC show-parse.o
CC evaluate.o
CC expand.o
CC inline.o
CC linearize.o
CC char.o
CC sort.o
CC allocate.o
CC compat-linux.o
CC ptrlist.o
CC flow.o
CC cse.o
CC simplify.o
CC memops.o
CC liveness.o
CC storage.o
CC unssa.o
CC dissect.o
AR libsparse.a
LINK test-lexing
CC test-parsing.o
LINK test-parsing
CC obfuscate.o
LINK obfuscate
CC compile.o
CC compile-i386.o
compile-i386.c: In function ‘emit_insn_atom’:
compile-i386.c:719:7: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result]
LINK compile
CC graph.o
LINK graph
CC sparse.o
LINK sparse
CC test-linearize.o
LINK test-linearize
CC example.o
LINK example
CC test-unssa.o
LINK test-unssa
CC test-dissect.o
LINK test-dissect
CC ctags.o
LINK ctags
GEN sparse.pc
Fix the following
Makefile:63: Your system does not have libxml, disabling c2xml
Makefile:75: Your system does not have libgtk2, disabling test-inspect
by:
$ sudo apt-get install libxml2-dev libgtk2.0-dev
For
/bin/sh: 1: llvm-config: not found
Makefile:79: Your system does not have llvm, disabling sparse-llvm
the llvm-3.2-dev is installed, but it is still there.
I still donot know how to fix the following warning too:
compile-i386.c: In function ‘emit_insn_atom’:
compile-i386.c:719:7: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result]
Could anyone give some suggestions?
Thank you very much!
Update : Following TheCodeArtist's suggestion, here is the build error log after llvm installed.
lovegcy#knltest-VirtualBox:~/git_root/sparse$ make
CC test-lexing.o
CC target.o
CC parse.o
CC tokenize.o
CC pre-process.o
CC symbol.o
CC lib.o
CC scope.o
CC expression.o
CC show-parse.o
CC evaluate.o
CC expand.o
CC inline.o
CC linearize.o
CC char.o
CC sort.o
CC allocate.o
CC compat-linux.o
CC ptrlist.o
CC flow.o
CC cse.o
CC simplify.o
CC memops.o
CC liveness.o
CC storage.o
CC unssa.o
CC dissect.o
AR libsparse.a
LINK test-lexing
CC test-parsing.o
LINK test-parsing
CC obfuscate.o
LINK obfuscate
CC compile.o
CC compile-i386.o
compile-i386.c: In function ‘emit_insn_atom’:
compile-i386.c:719:7: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result]
LINK compile
CC graph.o
LINK graph
CC sparse.o
LINK sparse
CC test-linearize.o
LINK test-linearize
CC example.o
LINK example
CC test-unssa.o
LINK test-unssa
CC test-dissect.o
LINK test-dissect
CC ctags.o
LINK ctags
CC c2xml.o
LINK c2xml
CC test-inspect.o
CC ast-model.o
CC ast-view.o
CC ast-inspect.o
LINK test-inspect
CC sparse-llvm.o
LINK sparse-llvm
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(Signals.o): In function PrintStackTrace(void*)':
(.text+0x74): undefined reference todladdr'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(Signals.o): In function PrintStackTrace(void*)':
(.text+0x1fe): undefined reference todladdr'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(Mutex.o): In function llvm::sys::MutexImpl::MutexImpl(bool)':
(.text+0x58): undefined reference topthread_mutexattr_init'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(Mutex.o): In function llvm::sys::MutexImpl::MutexImpl(bool)':
(.text+0x64): undefined reference topthread_mutexattr_settype'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(Mutex.o): In function llvm::sys::MutexImpl::MutexImpl(bool)':
(.text+0x74): undefined reference topthread_mutexattr_setpshared'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(Mutex.o): In function llvm::sys::MutexImpl::MutexImpl(bool)':
(.text+0x88): undefined reference topthread_mutexattr_destroy'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(Mutex.o): In function llvm::sys::MutexImpl::tryacquire()':
(.text+0x179): undefined reference topthread_mutex_trylock'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(RWMutex.o): In function llvm::sys::RWMutexImpl::RWMutexImpl()':
(.text+0x3e): undefined reference topthread_rwlock_init'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(RWMutex.o): In function llvm::sys::RWMutexImpl::~RWMutexImpl()':
(.text+0x80): undefined reference topthread_rwlock_destroy'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(RWMutex.o): In function llvm::sys::RWMutexImpl::reader_acquire()':
(.text+0xb9): undefined reference topthread_rwlock_rdlock'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(RWMutex.o): In function llvm::sys::RWMutexImpl::reader_release()':
(.text+0xe9): undefined reference topthread_rwlock_unlock'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(RWMutex.o): In function llvm::sys::RWMutexImpl::writer_acquire()':
(.text+0x119): undefined reference topthread_rwlock_wrlock'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(RWMutex.o): In function llvm::sys::RWMutexImpl::writer_release()':
(.text+0x149): undefined reference topthread_rwlock_unlock'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(ThreadLocal.o): In function llvm::sys::ThreadLocalImpl::~ThreadLocalImpl()':
(.text+0x25): undefined reference topthread_key_delete'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(ThreadLocal.o): In function llvm::sys::ThreadLocalImpl::ThreadLocalImpl()':
(.text+0xae): undefined reference topthread_key_create'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(ThreadLocal.o): In function llvm::sys::ThreadLocalImpl::setInstance(void const*)':
(.text+0xe2): undefined reference topthread_setspecific'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(ThreadLocal.o): In function llvm::sys::ThreadLocalImpl::getInstance()':
(.text+0x10a): undefined reference topthread_getspecific'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(Threading.o): In function llvm::llvm_execute_on_thread(void (*)(void*), void*, unsigned int)':
(.text+0x1c2): undefined reference topthread_create'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(Threading.o): In function llvm::llvm_execute_on_thread(void (*)(void*), void*, unsigned int)':
(.text+0x1da): undefined reference topthread_join'
/usr/lib/llvm-3.2/lib/libLLVMSupport.a(Threading.o): In function llvm::llvm_execute_on_thread(void (*)(void*), void*, unsigned int)':
(.text+0x20c): undefined reference topthread_attr_setstacksize'
collect2: error: ld returned 1 exit status
make: * [sparse-llvm] Error 1
Properly installing llvm :
During the build, for make to detect llvm on the system ,llvm-config is required to be installed on your system properly. On Ubuntu, the following command will download(~16MB packages) and install all the dependencies correctly
$ sudo apt-get install llvm
Download the latest source of sparse
$ git clone git://git.kernel.org/pub/scm/devel/sparse/sparse.git
Build and install sparse
$ cd sparse
$ make
$ make install
(Tested on Ubuntu 10.04)
Fixing the innocuous Warning :
The following error is harmless in the current context as we are not concerned with the result of the call to write() at line 719 of compile-i386.c
compile-i386.c:719:7: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result]
Fixing this error is as simple as modifying line 719 of compile-i386.c to
comment[0] = write(STDOUT_FILENO, s, strlen(s));
This warning is triggered during build due to the -Wall (Enable ALL warnings) flag passed to gcc at line 16 of the Makefile
CFLAGS += -Wall -Wwrite-strings

Compiling libshout using QT/qmake

I'm trying to link my QT application to a DLL (libshout), while building for Windows.
I've added the appropriate lines to my .pro file:
LIBS += -L/local/lib -lmp3lame
LIBS += -L/local/lib -lshout
LIBS += -L/local/lib -logg
LIBS += -L/local/lib -lvorbis
LIBS += -lwsock32
I've also successfully built and installed libshout to /local/lib (I'm using mingw and the gcc-dw2 compiler).
However, qmake fails to link successfully. I've pasted the gcc/make output below. I'm not even sure it's trying to link to the right library (isn't .a/.la a static library?).
I've been tearing my hair out for 3 days over this one so any help appreciated :)
g++-dw2 -c -O2 -frtti -fexceptions -mthreads -Wall -DUNICODE -DQT_LARGEFILE_SUPP
ORT -DQT_DLL -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CO
RE_LIB -DQT_THREAD_SUPPORT -DQT_NEEDS_QMAIN -I'../../Qt/4.6.3/include/QtCore' -I
'../../Qt/4.6.3/include/QtNetwork' -I'../../Qt/4.6.3/include/QtGui' -I'../../Qt/
4.6.3/include/QtWebKit' -I'../../Qt/4.6.3/include' -I'../../Qt/4.6.3/include/Act
iveQt' -I'release' -I'../../Qt/4.6.3/mkspecs/win32-g++' -o release/qrc_resources
.o release/qrc_resources.cpp
g++-dw2 -enable-stdcall-fixup -Wl,-enable-auto-import -Wl,-enable-runtime-pseudo
-reloc -Wl,-s -mthreads -Wl -Wl,-subsystem,windows -o build/release/MyApp.exe ob
ject_script.MyApp.Release -L'c:/Qt/4.6.3/lib' -lmingw32 -lqtmain -L/local/lib -
lmp3lame -L/local/lib -lshout -lwsock32 -lQtWebKit4 -lQtGui4 -lQtNetwork4 -lQtCo
re4
C:/msys/1.0/local/lib/libshout.a(ogg.o): In function `free_codec':
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:188: undefined reference to `ogg_
stream_clear'
C:/msys/1.0/local/lib/libshout.a(ogg.o): In function `close_ogg':
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:144: undefined reference to `ogg_
sync_clear'
C:/msys/1.0/local/lib/libshout.a(ogg.o): In function `send_ogg':
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:90: undefined reference to `ogg_s
ync_buffer'
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:92: undefined reference to `ogg_s
ync_wrote'
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:94: undefined reference to `ogg_s
ync_pageout'
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:95: undefined reference to `ogg_p
age_bos'
C:/msys/1.0/local/lib/libshout.a(ogg.o): In function `open_codec':
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:154: undefined reference to `ogg_
page_serialno'
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:154: undefined reference to `ogg_
stream_init'
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:155: undefined reference to `ogg_
stream_pagein'
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:160: undefined reference to `ogg_
stream_clear'
C:/msys/1.0/local/lib/libshout.a(ogg.o): In function `send_ogg':
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:117: undefined reference to `ogg_
page_serialno'
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:119: undefined reference to `ogg_
stream_pagein'
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:94: undefined reference to `ogg_s
ync_pageout'
C:/msys/1.0/local/lib/libshout.a(ogg.o): In function `shout_open_ogg':
c:\myapp_app\external\libshout-2.2.2\src/ogg.c:74: undefined reference to `ogg_s
ync_init'
C:/msys/1.0/local/lib/libshout.a(vorbis.o): In function `free_vorbis_data':
c:\myapp_app\external\libshout-2.2.2\src/vorbis.c:103: undefined reference to `v
orbis_info_clear'
c:\myapp_app\external\libshout-2.2.2\src/vorbis.c:104: undefined reference to `v
orbis_comment_clear'
C:/msys/1.0/local/lib/libshout.a(vorbis.o): In function `read_vorbis_page':
c:\myapp_app\external\libshout-2.2.2\src/vorbis.c:83: undefined reference to `vo
rbis_synthesis_headerin'
c:\myapp_app\external\libshout-2.2.2\src/vorbis.c:82: undefined reference to `og
g_stream_packetout'
c:\myapp_app\external\libshout-2.2.2\src/vorbis.c:91: undefined reference to `og
g_stream_packetout'
C:/msys/1.0/local/lib/libshout.a(vorbis.o): In function `vorbis_blocksize':
c:\myapp_app\external\libshout-2.2.2\src/vorbis.c:110: undefined reference to `v
orbis_packet_blocksize'
C:/msys/1.0/local/lib/libshout.a(vorbis.o): In function `shout_open_vorbis':
c:\myapp_app\external\libshout-2.2.2\src/vorbis.c:57: undefined reference to `vo
rbis_info_init'
c:\myapp_app\external\libshout-2.2.2\src/vorbis.c:58: undefined reference to `vo
rbis_comment_init'
c:\myapp_app\external\libshout-2.2.2\src/vorbis.c:60: undefined reference to `og
g_stream_packetout'
c:\myapp_app\external\libshout-2.2.2\src/vorbis.c:62: undefined reference to `vo
rbis_synthesis_headerin'
collect2: ld returned 1 exit status
make[1]: *** [build/release/Myapp.exe] Error 1
make[1]: Leaving directory `/c/myapp_app/src'
make: *** [release] Error 2
My first guess would be that libogg and libvorbis aren't installed in /local/lib, did you check that they are there?

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