Let's say I have a Google sheet with tab1 and tab2
in tab 1 I have 2000 rows and 20 columns filled with data and 1000 rows are empty, so I have 3000 rows.
In tab2 I have a few formulas like vlookup and some if functions.
The options I can think of are:
I can name the range of the data in tab1 and use that in the formula(s) and if the range expands, I can edit the range
I can use option B:B
I can delete the empty rows and use B:B
what is the fastest way?
all three of those options have no real word effect on the overall performance given that you have only 3000 rows across 20 columns. the biggest impact on performance you can have is from QUERYs, IMPORTRANGEs and ARRAYFORMULAs if fed by a huge amount of data (10000+ rows) or if you have extensive calculations with multiple sub-steps consisting of whole virtual arrays.
Related
I maintain a table in Oracle that contains several hundred thousand lines of code, including a priority column, which indicates for each line its importance according to the needs of the system.
ID
BRAND
COLOR
VALUE
SIZE
PRIORITY
EFFECTIVE_DATE_FROM
EFFECTIVE_DATE_FROM
1
BL
BLUE
58345
12
1
10/07/2022
NULL
2
TK
BLACK
4455
1
1
10/07/2022
NULL
3
TK
RED
16358
88
2
11/01/2022
NULL
4
WRA
RED
98
10
6
18/07/2022
NULL
5
BL
BLUE
20942
18
7
02/06/2022
NULL
At any given moment thousands more rows may enter the table, and it is necessary to SELECT from it the 1000 rows with the highest priority.
Although the naive solution is to SELECT using ORDER BY PRIORITY ASC, we find that the process takes a long time when the table contains a very large amount of rows (say over 2 million records).
The solutions proposed so far are to divide the table into 2 different tables, so that in advance the records with priority 1 will be entered into Table A, and the rest of the records will be entered in Table B, and then we will SELECT using UNION between the two tables.
This way we save the ORDER BY process since Table A always contains priority 1, and it remains to sort only the data in Table B, which is expected to be smaller than the overall large table.
On the other hand, it was also suggested to leave the large table in place, and perform the SELECT using PARTITION BY on the priority column.
I searched the web for differences in speed or efficiency between the two options but did not find one, and I am debating how to do it. So which of the options is preferable if we focus on the efficiency and complexity of time?
As a pre-processing step, I need to select the top 1000 highly variable genes (rows) from a bulk RNA-seq data which contains about 60k genes across 100 different samples(columns). The column value already contains the mean of the triplicates. The table contains normalized value in FPKM (Note: I don't have access to raw counts and am not able to use common R packages as these packages takes raw counts as input.)
In this case, what is the best way to select the top 1000 variable genes ?
I have tried to filter out the genes using rowSums() function (to remove the genes with lower rowsums values) and narrowed it down from 60k genes to 10K genes but I am not sure if it the right way to select highly variable genes. Any input is appreciated.
row sum is first filtration step. after this your data will discarded by log2fold change cutoff and padjst value (0.05 or o.o1 depend on your goal). you can repeat this pathway with different row sum cutoff to see results. I personal discard row sums zero
I found some bottleneck of my query which select data from only single table then require time and i used non unique key index on two column and with column used in where clause.
select name ,isComplete from Student where year='2015' and isComplete='F'
Now i found some concept from internet like skewed column so what is it?
have an idea then plz help me?
and how to resolve problem of skewed column?
and how skewed column affect performance of the Query?
Skewed columns are columns in which the data is not evenly distributed among the rows.
For example, suppose:
You have a table order_lines with 100,000,000 rows
The table has a column named customer_id
You have 1,000,000 distinct customers
Some (very large) customers can have hundreds of thousands or millions of order lines.
In the above example, the data in order_lines.customer_id is skewed. On average, you'd expect each distinct customer_id to have 100 order lines (100 million rows divided by 1 million distinct customers). But some large customers have many, many more than 100 order lines.
This hurts performance because Oracle bases its execution plan on statistics. So, statistically speaking, Oracle thinks it can access order_lines based on a non-unique index on customer_id and get only 100 records back, which it might then join to another table or whatever using a NESTED LOOP operation.
But, then when it actually gets 1,000,000 order lines for a particular customer, the index access and nested loop join are hideously slow. It would have been far better for Oracle to do a full table scan and hash join to the other table.
So, when there is skewed data, the optimal access plan depends on which particular customer you are selecting!
Oracle lets you avoid this problem by optionally gathering "histograms" on columns, so Oracle knows which values have lots of rows and which have only a few. That gives the Oracle optimizer the information it needs to generate the best plan in most cases.
Full table scan and Index Scan both are depend on the Skewed column.
and Skewed column is nothing but your spread like gender column contain 60 male and 40 female.
I have to sum a huge number of data with aggregation and where clause, using this query
what I am doing is like this : I have three tables one contains terms the second contains user terms , and the third contains correlation factor between term and user term.
I want to calculate the similarity between the sentence that that user inserted with an already existing sentences, and take the results greater than .5 by summing the correlation factor between sentences' terms
The problem is that this query takes more than 15 min. because I have huge tables
any suggestions to improve performance please?
insert into PLAG_SENTENCE_SIMILARITY
SELECT plag_TERMS.SENTENCE_ID ,plag_User_TERMS.SENTENCE_ID,
least( sum( plag_TERM_CORRELATIONS3.CORRELATION_FACTOR)/ plag_terms.sentence_length,
sum (plag_TERM_CORRELATIONS3.CORRELATION_FACTOR)/ plag_user_terms.sentence_length),
plag_TERMs.isn,
plag_user_terms.isn
FROM plag_TERM_CORRELATIONS3,
plag_TERMS,
Plag_User_TERMS
WHERE ( Plag_TERMS.TERM_ROOT = Plag_TERM_CORRELATIONS3.TERM1
AND Plag_User_TERMS.TERM_ROOT = Plag_TERM_CORRELATIONS3.TERM2
AND Plag_User_Terms.ISN=123)
having
least( sum( plag_TERM_CORRELATIONS3.CORRELATION_FACTOR)/ plag_terms.sentence_length,
sum (plag_TERM_CORRELATIONS3.CORRELATION_FACTOR)/ plag_user_terms.sentence_length) >0.5
group by (plag_User_TERMS.SENTENCE_ID,plag_TERMS.SENTENCE_ID , plag_TERMs.isn, plag_terms.sentence_length,plag_user_terms.sentence_length, plag_user_terms.isn);
plag_terms contains more than 50 million records and plag_correlations3 contains 500000
If you have a sufficient amount of free disk space, then create a materialized view
over the join of the three tables
fast-refreshable on commit (don't use the ANSI join syntax here, even if tempted to do so, or the mview won't be fast-refreshable ... a strange bug in Oracle)
with query rewrite enabled
properly physically organized for quick calculations
The query rewrite is optional. If you can modify the above insert-select, then you can just select from the materialized view instead of selecting from the join of the three tables.
As for the physical organization, consider
hash partitioning by Plag_User_Terms.ISN (with a sufficiently high number of partitions; don't hesitate to partition your table with e.g. 1024 partitions, if it seems reasonable) if you want to do a bulk calculation over all values of ISN
single-table hash clustering by Plag_User_Terms.ISN if you want to retain your calculation over a single ISN
If you don't have a spare disk space, then just hint your query to
either use nested loops joins, since the number of rows processed seems to be quite low (assumed by the estimations in the execution plan)
or full-scan the plag_correlations3 table in parallel
Bottom line: Constrain your tables with foreign keys, check constraints, not-null constraints, unique constraints, everything! Because Oracle optimizer is capable of using most of these informations to its advantage, as are the people who tune SQL queries.
I have an application that collects performance metrics and stores them in a datamart. I then use Mondrian to enable analysis and ad-hoc exploration of the data. I'm collecting about 5e6 rows per day and total size of the METRIC table is about 300M rows.
We "color" our data based on the metrics comparison to an SLA. There are exactly 5 distinct values for color. When we do simple MDX queries to get, for example, a color distribution of the data for a specific date range, say 1 day, we see queries like below:
2014-06-11 23:17:08,042 DEBUG [sql] - 223: SqlTupleReader.readTuples
[[Color].[Color]]: executing sql [select "METRIC"."COLOR" as "c0"
from "METRIC" "METRIC" group by "METRIC"."COLOR" order by
"METRIC"."COLOR" ASC NULLS LAST] 2014-06-11 23:17:58,747 DEBUG [sql] -
223: , exec 50704 ms
In order to improve performance, the datamart includes aggregate tables at the hour and day levels, and both aggregate tables include the COLOR column.
I understand that Mondrian is very dependent on the underlying database performance, but there is really no way to tune this. I can create an index on COLOR (because a full scan of the index will be marginally faster than a full scan of the table), but it seems silly to create an index with 5 distinct value on a 300M row table. The day aggregate table has about 500K rows and would be significantly faster executing virtually the same query against this table, but Mondrian always seems to go to the base fact table for these dimension queries.
My question is, is there some way to avoid this query? If I can't avoid it, is it possible to get Mondrian to use the aggregate tables for this type of query? I have specified approxRowCount in the single level of this dimension/hierarchy and that eliminated the similar query to get the count of values. I haven't dug into the source of Mondrian yet to determine if there is a possibility of using the aggregate table or if there is some configuration on my part that is preventing it.
Edit for Clarification:
I probably didn't do a good job of asking my question-let me try and clarify. My MDX query looks something like:
select [Color].[Color].Members on columns,
{[Measures].[Metric Value], [Measures].[Count]} on rows
from [Metric]
where [Time].[2014].[June].[11]
I can look at this and hand write a SQL query that answers this query
select COLOR, avg(VALUE), sum(FACT_COUNT)
from AGG_DAY_METRIC
where YEAR = 2014
and MONTH = 6
and DAY_OF_MONTH = 11
group by COLOR
The database answers this query in about 100ms scanning approx 4K rows. It takes Mondrian several minutes to answer the
query because it does several queries that don't answer the MDX query directly, but rather get information about the
dimension. In the case above, the database has to scan 300M rows, taking 50 seconds, to return that there are 5 possible
colors. If color was in a normal dimension table there would only be 5 rows, but in a degenerate dimension there can be 100s
of millions of rows.
So my questions are:
a) Is there a way to tell Mondrian the values of a degenerate dimension and avoid these queries?
b) Is there a way to have Mondrian answer these queries from aggregate tables?
This problem was solved, not by modifying anything in the Mondrian schema or the application, but the database. The database in this case was Oracle and we were able to create a materialized view with query rewrite enabled.
The materialized view is created from the exact query issued by Mondrian. Since the color values don't change very frequently (almost never in our case), the materialized view does a full refresh once a day.
In this case the queries went from taking minute(s) to milliseconds. If your facing an issue like this and your database is Oracle this is a good approach to speeding up the tuples resolution for degenerate dimensions with low cardinality.
It's hard to give any specific directions without knowing more about your schema, but it looks to me you have to make sure that the number of rows with certain colours (count) has to be marked defined as an aggregate measure (Count or Max Number).
Please note that these aggregates are not calculated continuously (I think it would be to heavy for the backing data-store, and Mondrian won't keep a flowing set in memory for incoming facts).
The aggregation can be specified to be ran/rebuilt at specific times (nightly, hourly...). This would make Mondrian a bit unsuitable for real-time analysis, but you should be able to do almost instant queries on historical data.
If your dimension has 5 distinct values in a 300M fact table it should not be a degenerate dimension. It should be in a separate dimension table. A degenerate dimension should ONLY be used if its cardinality is close to the full fact table row count, making a separate table pointless, as there would be no significant storage savings and joining the dimension results in a lot of data being read;
If you put the colors on a separate dim table, any "Read Tuples" query will return results in a few ms, and your problem is solved.
However, more to the point of your question, Mondrian should be able to pick the dim values from the agg tables. Unless you have distinct-count aggregators in the cube, in which case you're in a tricky situation (unless there's an agg table that exactly matches the level of detail you need, Mondrian will very likely scan the fact table).
You should also set the highCardinality attribute of this degenerate dimension to True. Even with only 5 distinct values, having highCardinality=false tells Mondrian it's safe to scan the whole dimension to populate the list of members. Setting it to true stops this scan.
You should also add an index to this column. It's always a good idea to add indexes to every key and degenerate dimension column in a fact table. With an index the DB should answer much faster that SQL query.
Finally, you have a 300M row fact table. What DBMS are you using? Is it a Column oriented DB? If not, you should try them as a possible alternative to your data store. Column oriented DB have a significant performance increase over Row oriented DBs for Mondrian-like queries. There are a few good options out there, you should test drive them.