NoClassDefFoundError: javax/xml/bind/JAXBException in Java 11 but maven dependency already added - maven

Question

I am trying to migrate from Java 8 to Java 11, but I'm getting this error:
Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.8.0:compile (default-compile) on project Core: Fatal error compiling: java.lang.NoClassDefFoundError: javax/xml/bind/JAXBException: javax.xml.bind.JAXBException
Now, I tried to fix this issue adding this dependency to my pom.xml file:
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>2.3.1</version>
</dependency>
But I keep getting the exact same issue. I also tried with version 2.3.0.
I looked at my effective POM and the jaxb-api dependency appears there. Also, I opened the jar file that was downloaded by maven just to verify the class is present, it is.
Here's my POM file:
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>com.mycompany.core</groupId>
<artifactId>Core</artifactId>
<version>0.0.1-SNAPSHOT</version>
<name>Core</name>
<properties>
<maven.version>3.8.0</maven.version>
<java.version>11</java.version>
<maven.compiler.source>${java.version}</maven.compiler.source>
<maven.compiler.target>${java.version}</maven.compiler.target>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
... <!-- Other Sonar settings -->
</properties>
<dependencies>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-data-jpa</artifactId>
<version>${spring-boot.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-actuator</artifactId>
<version>${spring-boot.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-security</artifactId>
<version>${spring-boot.version}</version>
</dependency>
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>1.11</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.7</version>
</dependency>
<dependency>
<groupId>org.ehcache</groupId>
<artifactId>ehcache</artifactId>
<version>3.5.3</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-jcache</artifactId>
<version>${hibernate.version}</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-jpamodelgen</artifactId>
<version>${hibernate.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-envers</artifactId>
<version>${hibernate.version}</version>
</dependency>
<dependency>
<groupId>org.hibernate.validator</groupId>
<artifactId>hibernate-validator</artifactId>
<version>${hibernate.validator.version}</version>
</dependency>
<dependency>
<groupId>org.liquibase</groupId>
<artifactId>liquibase-core</artifactId>
<version>${liquibase.version}</version>
</dependency>
<dependency>
<groupId>net.logstash.logback</groupId>
<artifactId>logstash-logback-encoder</artifactId>
<version>5.2</version>
</dependency>
<dependency>
<groupId>org.postgresql</groupId>
<artifactId>postgresql</artifactId>
<version>42.2.5</version>
</dependency>
<dependency>
<groupId>org.mapstruct</groupId>
<artifactId>mapstruct-jdk8</artifactId>
<version>${mapstruct.version}</version>
</dependency>
<dependency>
<groupId>org.mapstruct</groupId>
<artifactId>mapstruct-processor</artifactId>
<version>${mapstruct.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
<scope>test</scope>
</dependency>
<!-- Mockito testing dependencies -->
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-core</artifactId>
<version>2.23.4</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.zalando</groupId>
<artifactId>problem-spring-web</artifactId>
<version>0.24.0-RC.0</version>
</dependency>
<dependency>
<groupId>org.zalando</groupId>
<artifactId>problem-spring-webflux</artifactId>
<version>0.24.0-RC.0</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>3.1.0</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>io.dropwizard.metrics</groupId>
<artifactId>metrics-core</artifactId>
<version>3.2.6</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>io.dropwizard.metrics</groupId>
<artifactId>metrics-annotation</artifactId>
<version>3.2.6</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>io.dropwizard.metrics</groupId>
<artifactId>metrics-json</artifactId>
<version>3.2.6</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>io.dropwizard.metrics</groupId>
<artifactId>metrics-jcache</artifactId>
<version>3.2.6</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>io.dropwizard.metrics</groupId>
<artifactId>metrics-jvm</artifactId>
<version>3.2.6</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>io.dropwizard.metrics</groupId>
<artifactId>metrics-servlet</artifactId>
<version>3.2.6</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>io.dropwizard.metrics</groupId>
<artifactId>metrics-servlets</artifactId>
<version>3.2.6</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-test</artifactId>
<version>2.0.7.RELEASE</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-test</artifactId>
<version>2.0.7.RELEASE</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-test</artifactId>
<version>5.0.10.RELEASE</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.maven</groupId>
<artifactId>maven-model</artifactId>
<version>3.3.9</version>
</dependency>
<!-- https://mvnrepository.com/artifact/javax.xml.bind/jaxb-api -->
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>2.3.1</version>
</dependency>
<dependency>
<groupId>org.glassfish.jaxb</groupId>
<artifactId>jaxb-runtime</artifactId>
<version>2.3.1</version>
</dependency>
</dependencies>
<build>
<extensions>
<extension>
<groupId>kr.motd.maven</groupId>
<artifactId>os-maven-plugin</artifactId>
<version>1.6.1</version>
</extension>
</extensions>
<plugins>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>${jacoco-maven-plugin.version}</version>
<executions>
<execution>
<id>pre-unit-tests</id>
<goals>
<goal>prepare-agent</goal>
</goals>
<configuration>
<!-- Sets the path to the file which contains the execution data. -->
<destFile>${project.build.directory}/coverage/jacoco/jacoco.exec</destFile>
</configuration>
</execution>
<!-- Ensures that the code coverage report for unit tests is created after unit tests have been run -->
<execution>
<id>post-unit-test</id>
<phase>test</phase>
<goals>
<goal>report</goal>
</goals>
<configuration>
<dataFile>${project.build.directory}/coverage/jacoco/jacoco.exec</dataFile>
<outputDirectory>${project.build.directory}/coverage/jacoco</outputDirectory>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.22.1</version>
<configuration>
<excludes>
<exclude>**/web/**</exclude>
</excludes>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.0</version>
<configuration>
<source>11</source>
<target>11</target>
<annotationProcessorPaths>
<path>
<groupId>org.mapstruct</groupId>
<artifactId>mapstruct-processor</artifactId>
<version>${mapstruct.version}</version>
</path>
<!-- For JPA static metamodel generation -->
<path>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-jpamodelgen</artifactId>
<version>${hibernate.version}</version>
</path>
</annotationProcessorPaths>
</configuration>
</plugin>
<!-- create a complete jar for testing in other environments -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>3.1.2</version>
<executions>
<execution>
<goals>
<goal>test-jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<descriptors>
<descriptor>src/main/assembly/test-jar-with-dependencies.xml</descriptor>
</descriptors>
</configuration>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.sonarsource.scanner.maven</groupId>
<artifactId>sonar-maven-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.sonarsource.scanner.maven</groupId>
<artifactId>sonar-maven-plugin</artifactId>
<version>${sonar-maven-plugin.version}</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>${maven-compiler-plugin.version}</version>
</plugin>
<plugin>
<groupId>org.liquibase</groupId>
<artifactId>liquibase-maven-plugin</artifactId>
<version>${liquibase.version}</version>
<configuration>
... <!-- some settings -->
</configuration>
<dependencies>
<dependency>
<groupId>org.javassist</groupId>
<artifactId>javassist</artifactId>
<version>${javassist.version}</version>
</dependency>
<dependency>
<groupId>org.liquibase.ext</groupId>
<artifactId>liquibase-hibernate5</artifactId>
<version>${liquibase-hibernate5.version}</version>
</dependency>
<dependency>
<groupId>javax.validation</groupId>
<artifactId>validation-api</artifactId>
<version>${validation-api.version}</version>
</dependency>
</dependencies>
</plugin>
</plugins>
</pluginManagement>
</build>
</project>

Answer 1

Had the same issue, if anyone still stumbling upon this will leave a solution here.
It's hibernate-jpamodelgen library that is causing the error.
There is an open issue in hibernate for this HHH-12991. You can found a workaround here, didn't work for me.
But maven-processor-plugin from this answer did the trick