Use commands with parentheses like diff in shell script - shell

I want to diff output from 2 commands
diff output from
cat file1 and cat file2
And I found that the solution is
diff <(cat file1) <(cat file2)
However
If I put this in a shell script
The parentheses cannot be recognized since it means calling sub-shell in shell script.. (I wonder if what I know is correct)
#!bin/bash
diff <(cat $1) <(cat $2)
syntax error near unexpected token `('
Is there any solution to use commands requiring parentheses in shell script ?
I've tried
diff `<(cat $1) <(cat $2)`
diff `<(cat $1)` `<(cat $2)`
diff "<(cat $1) <(cat $2)"
diff <`(`cat $1`)` <`(`cat $2`)`
but none of the above works
I used to dump output to other files and compare those files
cat $1 > out1.txt
cat $2 > out2.txt
diff -b out1.txt out2.txt
I know this could work, but I just want to know if there's any way without dumping the output to files beforehand

If you write a script containing bash commands, you need to run it with bash, not sh. (Consider: Would you expect rm scriptfile to run the bash commands contained in the file?)
If you want something more portable, you can use FIFOs explicitly (in particular, the mkfifo command):
#!/bin/sh
mkfifo fifo1 fifo2
cat "$1" >>fifo1 &
cat "$2" >>fifo2 &
diff -b fifo1 fifo2
rm fifo1 fifo2

i tried this test.sh and get the right output.
#! /bin/bash
diff <(cat $1) <(cat $2)

Related

What is the difference between using process substitution vs. a pipe?

I came across an example for the using tee utility in the tee info page:
wget -O - http://example.com/dvd.iso | tee >(sha1sum > dvd.sha1) > dvd.iso
I looked up the >(...) syntax and found something called "process substitution". From what I understand, it makes a process look like a file that another process could write/append its output to. (Please correct me if I'm wrong on that point.)
How is this different from a pipe? (|) I see a pipe is being used in the above example—is it just a precedence issue? or is there some other difference?
There's no benefit here, as the line could equally well have been written like this:
wget -O - http://example.com/dvd.iso | tee dvd.iso | sha1sum > dvd.sha1
The differences start to appear when you need to pipe to/from multiple programs, because these can't be expressed purely with |. Feel free to try:
# Calculate 2+ checksums while also writing the file
wget -O - http://example.com/dvd.iso | tee >(sha1sum > dvd.sha1) >(md5sum > dvd.md5) > dvd.iso
# Accept input from two 'sort' processes at the same time
comm -12 <(sort file1) <(sort file2)
They're also useful in certain cases where you for any reason can't or don't want to use pipelines:
# Start logging all error messages to file as well as disk
# Pipes don't work because bash doesn't support it in this context
exec 2> >(tee log.txt)
ls doesntexist
# Sum a column of numbers
# Pipes don't work because they create a subshell
sum=0
while IFS= read -r num; do (( sum+=num )); done < <(curl http://example.com/list.txt)
echo "$sum"
# apt-get something with a generated config file
# Pipes don't work because we want stdin available for user input
apt-get install -c <(sed -e "s/%USER%/$USER/g" template.conf) mysql-server
Another major difference is the propagation of return values / exit codes (I'll use simpler commands to illustrate):
Pipe:
$ ls -l /notthere | tee listing.txt
ls: cannot access '/notthere': No such file or directory
$ echo $?
0
-> exit code of tee is propagated
Process substitution:
$ ls -l /notthere > >(tee listing.txt)
ls: cannot access '/notthere': No such file or directory
$ echo $?
2
-> exit code of ls is propagated
There are of course several methods to work around this (e.g. set -o pipefail, variable PIPESTATUS), but I think it's worth mentioning since this is the default behavior.
Yet another rather subtle, yet potentially annoying difference lies in subprocess termination (best illustrated using commands that produce lots of output):
Pipe:
#!/usr/bin/env bash
tar --create --file /tmp/etc-backup.tar --verbose --directory /etc . 2>&1 | tee /tmp/etc-backup.log
retval=${PIPESTATUS[0]}
(( ${retval} == 0 )) && echo -e "\n*** SUCCESS ***\n" || echo -e "\n*** FAILURE (EXIT CODE: ${retval}) ***\n"
-> after the line containing the pipe construct, all commands of the pipe have already terminated (otherwise PIPESTATUS could not contain their respective exit codes)
Process substitution:
#!/usr/bin/env bash
tar --create --file /tmp/etc-backup.tar --verbose --directory /etc . &> >(tee /tmp/etc-backup.log)
retval=$?
(( ${retval} == 0 )) && echo -e "\n*** SUCCESS ***\n" || echo -e "\n*** FAILURE (EXIT CODE: ${retval}) ***\n"
-> after the line containing the process substitution, the command within >(...), i.e. tee in this example, may still be running, potentially causing desynchronized console output (SUCCESS / FAILURE message gets mixed in with still flowing tar output) [*]
[*] Can be reproduced on the framebuffer console, but does not seem to affect GUI terminals like KDE's Konsole (likely due to different buffering strategies).

Run commands in text file in bash

How can I run a command from a line inside a text file, one line of my text file looks like this
echo "RouterPing;`ping -c4 -w4 -q DeviceIP| tail -2 |awk '{print}' ORS=' '`;$(date)" >> somefile.txt &
I have a file that has thousands of lines that being generated by external program and want to execute every line in it. I need each line to be run exactly as if I am running it from bash shell
You can just run:
bash file.txt
you can use below , but i would highly not recommend executing 1000 commands from a file ,
#!/usr/bin/bash
filename="$1"
while read -r line
do
$line
done < "$filename"
How to use
./this_file_name.sh file_with_commands
you$ bash somefile.txt
Just make sure your file is executable (chmod 744 somefile.txt)
with dot ('.') (I removed the & because if the command runs in background it wont work)
echo "RouterPing;`ping -c4 -w4 -q DeviceIP| tail -2 |awk '{print}' ORS=' '`;$(date)" >> somefile.txt
. somefile.txt

Replacing 'source file' with its content, and expanding variables, in bash

In a script.sh,
source a.sh
source b.sh
CMD1
CMD2
CMD3
how can I replace the source *.sh with their content (without executing the commands)?
I would like to see what the bash interpreter executes after sourcing the files and expanding all variables.
I know I can use set -n -v or run bash -n -v script.sh 2>output.sh, but that would not replace the source commands (and even less if a.sh or b.sh contain variables).
I thought of using a subshell, but that still doesn't expand the source lines. I tried a combination of set +n +v and set -n -v before and after the source lines, but that still does not work.
I'm going to send that output to a remote machine using ssh.
I could use <<output.sh to pipe the content into the ssh command, but I can't log as root onto the remote machine, but I am however a sudoer.
Therefore, I thought I could create the script and send it as a base64-encoded string (using that clever trick )
base64 script | ssh remotehost 'base64 -d | sudo bash'
Is there a solution?
Or do you have a better idea?
You can do something like this:
inline.sh:
#!/usr/bin/env bash
while read line; do
if [[ "$line" =~ (\.|source)\s+.+ ]]; then
file="$(echo $line | cut -d' ' -f2)"
echo "$(cat $file)"
else
echo "$line"
fi
done < "$1"
Note this assumes the sourced files exist, and doesn't handle errors. You should also handle possible hashbangs. If the sourced files contain themselves source, you need to apply the script recursively, e.g. something like (not tested):
while egrep -q '^(source|\.)' main.sh; do
bash inline.sh main.sh > main.sh
done
Let's test it
main.sh:
source a.sh
. b.sh
echo cc
echo "$var_a $var_b"
a.sh:
echo aa
var_a="stack"
b.sh:
echo bb
var_b="overflow"
Result:
bash inline.sh main.sh
echo aa
var_a="stack"
echo bb
var_b="overflow"
echo cc
echo "$var_a $var_b"
bash inline.sh main.sh | bash
aa
bb
cc
stack overflow
BTW, if you just want to see what bash executes, you can run
bash -x [script]
or remotely
ssh user#host -t "bash -x [script]"

How to refer to redirection file from within a bash script?

I'd like to write a bash script myscript such that issuing this command:
myscript > filename.txt
would return the name of the filename that it's output is being redirected to, filename.txt. Is this possible?
If you are running on Linux, check where /proc/self/fd/1 links to.
For example, the script can do the following:
#!/bin/bash
readlink /proc/self/fd/1
And then run it:
$ ./myscript > filename.txt
$ cat filename.txt
/tmp/filename.txt
Note that if you want to save the value of the output file to a variable or something, you can't use /proc/self since it will be different in the subshell, but you can still use $$:
outputfile=$(readlink /proc/$$/fd/1)
Using lsof:
outfile=$(lsof -p $$ | awk '/1w/{print $NF}')
echo $outfile

How to invoke bash, run commands inside the new shell, and then give control back to user?

This must either be really simple or really complex, but I couldn't find anything about it... I am trying to open a new bash instance, then run a few commands inside it, and give the control back to the user inside that same instance.
I tried:
$ bash -lic "some_command"
but this executes some_command inside the new instance, then closes it. I want it to stay open.
One more detail which might affect answers: if I can get this to work I will use it in my .bashrc as alias(es), so bonus points for an alias implementation!
bash --rcfile <(echo '. ~/.bashrc; some_command')
dispenses the creation of temporary files. Question on other sites:
https://serverfault.com/questions/368054/run-an-interactive-bash-subshell-with-initial-commands-without-returning-to-the
https://unix.stackexchange.com/questions/123103/how-to-keep-bash-running-after-command-execution
This is a late answer, but I had the exact same problem and Google sent me to this page, so for completeness here is how I got around the problem.
As far as I can tell, bash does not have an option to do what the original poster wanted to do. The -c option will always return after the commands have been executed.
Broken solution: The simplest and obvious attempt around this is:
bash -c 'XXXX ; bash'
This partly works (albeit with an extra sub-shell layer). However, the problem is that while a sub-shell will inherit the exported environment variables, aliases and functions are not inherited. So this might work for some things but isn't a general solution.
Better: The way around this is to dynamically create a startup file and call bash with this new initialization file, making sure that your new init file calls your regular ~/.bashrc if necessary.
# Create a temporary file
TMPFILE=$(mktemp)
# Add stuff to the temporary file
echo "source ~/.bashrc" > $TMPFILE
echo "<other commands>" >> $TMPFILE
echo "rm -f $TMPFILE" >> $TMPFILE
# Start the new bash shell
bash --rcfile $TMPFILE
The nice thing is that the temporary init file will delete itself as soon as it is used, reducing the risk that it is not cleaned up correctly.
Note: I'm not sure if /etc/bashrc is usually called as part of a normal non-login shell. If so you might want to source /etc/bashrc as well as your ~/.bashrc.
You can pass --rcfile to Bash to cause it to read a file of your choice. This file will be read instead of your .bashrc. (If that's a problem, source ~/.bashrc from the other script.)
Edit: So a function to start a new shell with the stuff from ~/.more.sh would look something like:
more() { bash --rcfile ~/.more.sh ; }
... and in .more.sh you would have the commands you want to execute when the shell starts. (I suppose it would be elegant to avoid a separate startup file -- you cannot use standard input because then the shell will not be interactive, but you could create a startup file from a here document in a temporary location, then read it.)
bash -c '<some command> ; exec /bin/bash'
will avoid additional shell sublayer
You can get the functionality you want by sourcing the script instead of running it. eg:
$cat script
cmd1
cmd2
$ . script
$ at this point cmd1 and cmd2 have been run inside this shell
Append to ~/.bashrc a section like this:
if [ "$subshell" = 'true' ]
then
# commands to execute only on a subshell
date
fi
alias sub='subshell=true bash'
Then you can start the subshell with sub.
The accepted answer is really helpful! Just to add that process substitution (i.e., <(COMMAND)) is not supported in some shells (e.g., dash).
In my case, I was trying to create a custom action (basically a one-line shell script) in Thunar file manager to start a shell and activate the selected Python virtual environment. My first attempt was:
urxvt -e bash --rcfile <(echo ". $HOME/.bashrc; . %f/bin/activate;")
where %f is the path to the virtual environment handled by Thunar.
I got an error (by running Thunar from command line):
/bin/sh: 1: Syntax error: "(" unexpected
Then I realized that my sh (essentially dash) does not support process substitution.
My solution was to invoke bash at the top level to interpret the process substitution, at the expense of an extra level of shell:
bash -c 'urxvt -e bash --rcfile <(echo "source $HOME/.bashrc; source %f/bin/activate;")'
Alternatively, I tried to use here-document for dash but with no success. Something like:
echo -e " <<EOF\n. $HOME/.bashrc; . %f/bin/activate;\nEOF\n" | xargs -0 urxvt -e bash --rcfile
P.S.: I do not have enough reputation to post comments, moderators please feel free to move it to comments or remove it if not helpful with this question.
With accordance with the answer by daveraja, here is a bash script which will solve the purpose.
Consider a situation if you are using C-shell and you want to execute a command
without leaving the C-shell context/window as follows,
Command to be executed: Search exact word 'Testing' in current directory recursively only in *.h, *.c files
grep -nrs --color -w --include="*.{h,c}" Testing ./
Solution 1: Enter into bash from C-shell and execute the command
bash
grep -nrs --color -w --include="*.{h,c}" Testing ./
exit
Solution 2: Write the intended command into a text file and execute it using bash
echo 'grep -nrs --color -w --include="*.{h,c}" Testing ./' > tmp_file.txt
bash tmp_file.txt
Solution 3: Run command on the same line using bash
bash -c 'grep -nrs --color -w --include="*.{h,c}" Testing ./'
Solution 4: Create a sciprt (one-time) and use it for all future commands
alias ebash './execute_command_on_bash.sh'
ebash grep -nrs --color -w --include="*.{h,c}" Testing ./
The script is as follows,
#!/bin/bash
# =========================================================================
# References:
# https://stackoverflow.com/a/13343457/5409274
# https://stackoverflow.com/a/26733366/5409274
# https://stackoverflow.com/a/2853811/5409274
# https://stackoverflow.com/a/2853811/5409274
# https://www.linuxquestions.org/questions/other-%2Anix-55/how-can-i-run-a-command-on-another-shell-without-changing-the-current-shell-794580/
# https://www.tldp.org/LDP/abs/html/internalvariables.html
# https://stackoverflow.com/a/4277753/5409274
# =========================================================================
# Enable following line to see the script commands
# getting printing along with their execution. This will help for debugging.
#set -o verbose
E_BADARGS=85
if [ ! -n "$1" ]
then
echo "Usage: `basename $0` grep -nrs --color -w --include=\"*.{h,c}\" Testing ."
echo "Usage: `basename $0` find . -name \"*.txt\""
exit $E_BADARGS
fi
# Create a temporary file
TMPFILE=$(mktemp)
# Add stuff to the temporary file
#echo "echo Hello World...." >> $TMPFILE
#initialize the variable that will contain the whole argument string
argList=""
#iterate on each argument
for arg in "$#"
do
#if an argument contains a white space, enclose it in double quotes and append to the list
#otherwise simply append the argument to the list
if echo $arg | grep -q " "; then
argList="$argList \"$arg\""
else
argList="$argList $arg"
fi
done
#remove a possible trailing space at the beginning of the list
argList=$(echo $argList | sed 's/^ *//')
# Echoing the command to be executed to tmp file
echo "$argList" >> $TMPFILE
# Note: This should be your last command
# Important last command which deletes the tmp file
last_command="rm -f $TMPFILE"
echo "$last_command" >> $TMPFILE
#echo "---------------------------------------------"
#echo "TMPFILE is $TMPFILE as follows"
#cat $TMPFILE
#echo "---------------------------------------------"
check_for_last_line=$(tail -n 1 $TMPFILE | grep -o "$last_command")
#echo $check_for_last_line
#if tail -n 1 $TMPFILE | grep -o "$last_command"
if [ "$check_for_last_line" == "$last_command" ]
then
#echo "Okay..."
bash $TMPFILE
exit 0
else
echo "Something is wrong"
echo "Last command in your tmp file should be removing itself"
echo "Aborting the process"
exit 1
fi
$ bash --init-file <(echo 'some_command')
$ bash --rcfile <(echo 'some_command')
In case you can't or don't want to use process substitution:
$ cat script
some_command
$ bash --init-file script
Another way:
$ bash -c 'some_command; exec bash'
$ sh -c 'some_command; exec sh'
sh-only way (dash, busybox):
$ ENV=script sh
Here is yet another (working) variant:
This opens a new gnome terminal, then in the new terminal it runs bash. The user's rc file is read first, then a command ls -la is sent for execution to the new shell before it turns interactive.
The last echo adds an extra newline that is needed to finish execution.
gnome-terminal -- bash -c 'bash --rcfile <( cat ~/.bashrc; echo ls -la ; echo)'
I also find it useful sometimes to decorate the terminal, e.g. with colorfor better orientation.
gnome-terminal --profile green -- bash -c 'bash --rcfile <( cat ~/.bashrc; echo ls -la ; echo)'

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