Execute bash script when running docker-compose in gitlab CI - bash

I've got the following .gitlab-ci.yml file:
image:
name: docker/compose:1.24.1
entrypoint: ["/bin/sh","-l","-c"]
services:
- docker:dind
stages:
- test
- deploy
pytest:
stage: test
script:
- cd tests/
- docker-compose -f docker-compose.test.yml up --abort-on-container-exit --exit-code-from pytest
which runs the docker-compose.test.yml file, which looks like this:
version: '3'
services:
pytest:
build: ..
command: bash -c "/wait-for-it.sh dynamodb:8000 -- && cd /tests/ && pytest -s"
dynamodb:
image: amazon/dynamodb-local
ports:
- '8000:8000'
command: -jar DynamoDBLocal.jar -inMemory -port 8000
In this case, pytest waits for dynamodb to be up and running and then runs the python tests. This works well on my machine.
However, when Gitlab CI actually runs it, I get the following error:
bash: /wait-for-it.sh: Permission denied
How to avoid this issue? Using chmod -x, file is not found.

you need to make wait-for-it.sh executable, in your Dockerfile add:
RUN chmod +x /path/to/wait-for-it.sh

Related

Dockerfile ENTRYPOINT script doesn't run when the container starts if docker compose is ran from Gitlab pipelines

My container has a shell script that runs after the container starts. It was working before but when I push it to Gitlab and ran it with a pipeline it doesn't start. Here's my Dockerfile.
Dockerfile
# Setup SQL Server 2019
FROM mcr.microsoft.com/mssql/server:2019-latest
ENV SA_PASSWORD=Banana100
ENV ACCEPT_EULA=Y
ENV MSSQL_PID=Developer
USER mssql
#Copy test database and create DB script to image working directory
WORKDIR /usr/src/app
COPY . /usr/src/app
EXPOSE 1433
ENTRYPOINT /bin/bash ./entrypoint.sh
What's weird is that whenever I delete the /bin/bash ./entrypoint.sh, retype it, then run docker compose --force-recreate --build -d on my local machine, the shell script is executed just fine. But if the pipeline do it, it doesn't work. I have nothing to push on my repo, Git thinks I didn't make any changes at all.
This post here suggest that it could be an issue with the line endings. It probably worked on most people but I have tried these with no luck:
Daniel Howard's answer
P.J.Meisch's answer
Ryan Allen's answer
My entrypoint.sh is a shell script that runs an SQL file to create and restore database. Please see the codes below.
entrypoint.sh
# /opt/mssql/bin/sqlservr & /opt/mssql-tools/bin/sqlcmd -S localhost -U sa -P FBuilder*09 -d master -i createDB.sql
/opt/mssql/bin/sqlservr & /opt/mssql-tools/bin/sqlcmd -S localhost -U sa -P $SA_PASSWORD -d master -i createDB.sql
while true; do sleep 1000; done
docker-compose.yml
version: "3"
services:
fb_db:
container_name: test_fbdb
build: ./test.environment
ports:
- "5002:1433"
gitlab-ci.yml
.ci_server:
tags:
- ci
stages:
- build
- test
variables:
SOLUTION_NAME: FBSVC.sln
before_script:
- Set-Variable -Name "time" -Value (date -Format "%H:%m")
- echo ${time}
- echo "started by ${GITLAB_USER_NAME}"
build:
stage: build
extends:
- .ci_server
script:
- echo "Restoring project dependencies..."
- $Env:Path += ";C:\nuget"
- nuget restore
- echo "Preparing development environment"
- copy "D:\CI_TestDB\FormulaBuilder\FormulaBuilder.bak" "D:\Project Files\Gitlab-Runner\builds\_1ZgTgcF\0\water-utilities\formula-builder\test.environment"
- docker compose up --force-recreate --build -d
- echo "Publishing project..."
- $Env:Path += ";C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\MSBuild\Current\Bin"
- msbuild FBSVC.sln /p:DeployOnBuild=true /p:PublishProfile=CI_IntegrationTest
- echo "Build stage completed successfully!"
only:
- merge_requests
test:
stage: test
variables:
GIT_STRATEGY: clone
extends:
- .ci_server
script:
- echo "Installing dev dependencies..."
- npm ci
- echo "Running tests..."
- npm run cy:test
dependencies:
- build
only:
- merge_requests
The Gitlab Runner is running on my physical local machine, it is not a Shared Runner. Any help would be appreciated. Thanks!
UPDATE (June 24, 2022)
I have replaced the ENTRYPOINT on the Dockerfile to ENTRYPOINT [ "/bin/bash", "-c", "./entrypoint.sh"], it is still do the same issue. Looking at the "Select End Line Sequence" menu on VS Code found at the bottom-right corner, it is set to "LF". I checked the Dockerfile being pulled by the pipeline it is now set to "CRLF". Does this matter?
I have ran git config --global core.autocrlf input multiple times but if the file is being pulled from the repo, it automatically does this. Hence, I decided to detach the folder containing my files that builds my database environment for the time being. Doing this requires rewriting the whole ENTRYPOINT line on my Dockerfile to work properly again. If you have any advice, please let me know.

docker container failing to start after running install.sh script [duplicate]

This question already has answers here:
Docker-Compose + Command
(2 answers)
Closed 9 months ago.
I am using this docker-compose file:
version: '3.8'
# Services
services:
# Nginx Service
nginx:
image: nginx:1.21
ports:
- 80:80
volumes:
- ./src:/var/www/php
- ./.docker/nginx/conf.d:/etc/nginx/conf.d
depends_on:
- php
# PHP Service
php:
build: ./.docker/php
working_dir: /var/www/php
volumes:
- ./src:/var/www/php
command: /bin/bash -c "./install.sh"
depends_on:
mysql:
condition: service_healthy
# MySQL Service
mysql:
image: mysql/mysql-server:8.0
environment:
MYSQL_ROOT_PASSWORD: root
MYSQL_ROOT_HOST: "%"
MYSQL_DATABASE: demo
volumes:
- ./.docker/mysql/my.cnf:/etc/mysql/conf.d/my.cnf
- mysqldata:/var/lib/mysql
healthcheck:
test: mysqladmin ping -h 127.0.0.1 -u root --password=$$MYSQL_ROOT_PASSWORD
interval: 2s
retries: 10
# PhpMyAdmin Service
phpmyadmin:
image: phpmyadmin/phpmyadmin:5
ports:
- 8080:80
environment:
PMA_HOST: mysql
depends_on:
mysql:
condition: service_healthy
# Volumes
volumes:
mysqldata:
I am trying to run a bash script (install.sh) after the container is created to run apt-get update install wget etc, but the php container fails when I try to run it.
My bash script is:
#!/bin/bash
mkdir testdir && apt-get update && apt-get install wget -y
(this file is here: ./src/install.sh)
It creates the folder correctly and the logs suggest it is trying to install wget (but never seems to finish) but the container never starts correctly.
If I remove the command: /bin/bash -c "./install.sh" line everything works correctly (but wget is not installed).
I have tried moving the command to a Dockerfile as a RUN command but it never seems to run
Any ideas why this is happening?
Thanks
As Hans Kilian said in the comments, docker-compose commands replace anything set by CMD or ENTRYPOINT. These commands are necessary for the container to function, and thus it never does anything more than installing wget.
You appear to be trying to run a file located under "./install.sh," which is not an absolute path. Try running the command using the absolute path of the file, as dockerfiles do not, in my experience, recognize changing directory after each command, so:
RUN cd /xyz
RUN /bin/bash -c "./install.sh"
does not have the same result as
RUN /bin/bash -c "/xyz/install.sh"
(where /xyz is the directory where install.sh is located)
Additionally, make sure the file is marked as executable with chmod when it is copied into your container.
However, if all you desire to do is create a directory and install wget, I would simply do this in the Dockerfile:
RUN mkdir testdir
RUN apt-get update && apt-get install -y wget

See Gitlab CI/CD pipeline on my local machine [duplicate]

If a GitLab project is configured on GitLab CI, is there a way to run the build locally?
I don't want to turn my laptop into a build "runner", I just want to take advantage of Docker and .gitlab-ci.yml to run tests locally (i.e. it's all pre-configured). Another advantage of that is that I'm sure that I'm using the same environment locally and on CI.
Here is an example of how to run Travis builds locally using Docker, I'm looking for something similar with GitLab.
Since a few months ago this is possible using gitlab-runner:
gitlab-runner exec docker my-job-name
Note that you need both docker and gitlab-runner installed on your computer to get this working.
You also need the image key defined in your .gitlab-ci.yml file. Otherwise won't work.
Here's the line I currently use for testing locally using gitlab-runner:
gitlab-runner exec docker test --docker-volumes "/home/elboletaire/.ssh/id_rsa:/root/.ssh/id_rsa:ro"
Note: You can avoid adding a --docker-volumes with your key setting it by default in /etc/gitlab-runner/config.toml. See the official documentation for more details. Also, use gitlab-runner exec docker --help to see all docker-based runner options (like variables, volumes, networks, etc.).
Due to the confusion in the comments, I paste here the gitlab-runner --help result, so you can see that gitlab-runner can make builds locally:
gitlab-runner --help
NAME:
gitlab-runner - a GitLab Runner
USAGE:
gitlab-runner [global options] command [command options] [arguments...]
VERSION:
1.1.0~beta.135.g24365ee (24365ee)
AUTHOR(S):
Kamil TrzciƄski <ayufan#ayufan.eu>
COMMANDS:
exec execute a build locally
[...]
GLOBAL OPTIONS:
--debug debug mode [$DEBUG]
[...]
As you can see, the exec command is to execute a build locally.
Even though there was an issue to deprecate the current gitlab-runner exec behavior, it ended up being reconsidered and a new version with greater features will replace the current exec functionality.
Note that this process is to use your own machine to run the tests using docker containers. This is not to define custom runners. To do so, just go to your repo's CI/CD settings and read the documentation there. If you wanna ensure your runner is executed instead of one from gitlab.com, add a custom and unique tag to your runner, ensure it only runs tagged jobs and tag all the jobs you want your runner to be responsible of.
I use this docker-based approach:
Edit: 2022-10
docker run --entrypoint bash --rm -w $PWD -v $PWD:$PWD -v /var/run/docker.sock:/var/run/docker.sock gitlab/gitlab-runner:latest -c 'git config --global --add safe.directory "*";gitlab-runner exec docker test'
For all git versions > 2.35.2. You must add safe.directory within the container to avoid fatal: detected dubious ownership in repository at.... This also true for patched git versions < 2.35.2. The old command will not work anymore.
Details
0. Create a git repo to test this answer
mkdir my-git-project
cd my-git-project
git init
git commit --allow-empty -m"Initialize repo to showcase gitlab-runner locally."
1. Go to your git directory
cd my-git-project
2. Create a .gitlab-ci.yml
Example .gitlab-ci.yml
image: alpine
test:
script:
- echo "Hello Gitlab-Runner"
3. Create a docker container with your project dir mounted
docker run -d \
--name gitlab-runner \
--restart always \
-v $PWD:$PWD \
-v /var/run/docker.sock:/var/run/docker.sock \
gitlab/gitlab-runner:latest
(-d) run container in background and print container ID
(--restart always) or not?
(-v $PWD:$PWD) Mount current directory into the current directory of the container - Note: On Windows you could bind your dir to a fixed location, e.g. -v ${PWD}:/opt/myapp. Also $PWD will only work at powershell not at cmd
(-v /var/run/docker.sock:/var/run/docker.sock) This gives the container access to the docker socket of the host so it can start "sibling containers" (e.g. Alpine).
(gitlab/gitlab-runner:latest) Just the latest available image from dockerhub.
4. Execute with
Avoid fatal: detected dubious ownership in repository at... More info
docker exec -it -w $PWD gitlab-runner git config --global --add safe.directory "*"
Actual execution
docker exec -it -w $PWD gitlab-runner gitlab-runner exec docker test
# ^ ^ ^ ^ ^ ^
# | | | | | |
# (a) (b) (c) (d) (e) (f)
(a) Working dir within the container. Note: On Windows you could use a fixed location, e.g. /opt/myapp.
(b) Name of the docker container
(c) Execute the command "gitlab-runner" within the docker container
(d)(e)(f) run gitlab-runner with "docker executer" and run a job named "test"
5. Prints
...
Executing "step_script" stage of the job script
$ echo "Hello Gitlab-Runner"
Hello Gitlab-Runner
Job succeeded
...
Note: The runner will only work on the commited state of your code base. Uncommited changes will be ignored. Exception: The .gitlab-ci.yml itself does not have be commited to be taken into account.
Note: There are some limitations running locally. Have a look at limitations of gitlab runner locally.
I'm currently working on making a gitlab runner that works locally.
Still in the early phases, but eventually it will become very relevant.
It doesn't seem like gitlab want/have time to make this, so here you go.
https://github.com/firecow/gitlab-runner-local
If you are running Gitlab using the docker image there: https://hub.docker.com/r/gitlab/gitlab-ce, it's possible to run pipelines by exposing the local docker.sock with a volume option: -v /var/run/docker.sock:/var/run/docker.sock. Adding this option to the Gitlab container will allow your workers to access to the docker instance on the host.
The GitLab runner appears to not work on Windows yet and there is an open issue to resolve this.
So, in the meantime I am moving my script code out to a bash script, which I can easily map to a docker container running locally and execute.
In this case I want to build a docker container in my job, so I create a script 'build':
#!/bin/bash
docker build --pull -t myimage:myversion .
in my .gitlab-ci.yaml I execute the script:
image: docker:latest
services:
- docker:dind
before_script:
- apk add bash
build:
stage: build
script:
- chmod 755 build
- build
To run the script locally using powershell I can start the required image and map the volume with the source files:
$containerId = docker run --privileged -d -v ${PWD}:/src docker:dind
install bash if not present:
docker exec $containerId apk add bash
Set permissions on the bash script:
docker exec -it $containerId chmod 755 /src/build
Execute the script:
docker exec -it --workdir /src $containerId bash -c 'build'
Then stop the container:
docker stop $containerId
And finally clean up the container:
docker container rm $containerId
Another approach is to have a local build tool that is installed on your pc and your server at the same time.
So basically, your .gitlab-ci.yml will basically call your preferred build tool.
Here an example .gitlab-ci.yml that i use with nuke.build:
stages:
- build
- test
- pack
variables:
TERM: "xterm" # Use Unix ASCII color codes on Nuke
before_script:
- CHCP 65001 # Set correct code page to avoid charset issues
.job_template: &job_definition
except:
- tags
build:
<<: *job_definition
stage: build
script:
- "./build.ps1"
test:
<<: *job_definition
stage: test
script:
- "./build.ps1 test"
variables:
GIT_CHECKOUT: "false"
pack:
<<: *job_definition
stage: pack
script:
- "./build.ps1 pack"
variables:
GIT_CHECKOUT: "false"
only:
- master
artifacts:
paths:
- output/
And in nuke.build i've defined 3 targets named like the 3 stages (build, test, pack)
In this way you have a reproducible setup (all other things are configured with your build tool) and you can test directly the different targets of your build tool.
(i can call .\build.ps1 , .\build.ps1 test and .\build.ps1 pack when i want)
I am on Windows using VSCode with WSL
I didn't want to register my work PC as a runner so instead I'm running my yaml stages locally to test them out before I upload them
$ sudo apt-get install gitlab-runner
$ gitlab-runner exec shell build
yaml
image: node:10.19.0 # https://hub.docker.com/_/node/
# image: node:latest
cache:
# untracked: true
key: project-name
# key: ${CI_COMMIT_REF_SLUG} # per branch
# key:
# files:
# - package-lock.json # only update cache when this file changes (not working) #jkr
paths:
- .npm/
- node_modules
- build
stages:
- prepare # prepares builds, makes build needed for testing
- test # uses test:build specifically #jkr
- build
- deploy
# before_install:
before_script:
- npm ci --cache .npm --prefer-offline
prepare:
stage: prepare
needs: []
script:
- npm install
test:
stage: test
needs: [prepare]
except:
- schedules
tags:
- linux
script:
- npm run build:dev
- npm run test:cicd-deps
- npm run test:cicd # runs puppeteer tests #jkr
artifacts:
reports:
junit: junit.xml
paths:
- coverage/
build-staging:
stage: build
needs: [prepare]
only:
- schedules
before_script:
- apt-get update && apt-get install -y zip
script:
- npm run build:stage
- zip -r build.zip build
# cache:
# paths:
# - build
# <<: *global_cache
# policy: push
artifacts:
paths:
- build.zip
deploy-dev:
stage: deploy
needs: [build-staging]
tags: [linux]
only:
- schedules
# # - branches#gitlab-org/gitlab
before_script:
- apt-get update && apt-get install -y lftp
script:
# temporarily using 'verify-certificate no'
# for more on verify-certificate #jkr: https://www.versatilewebsolutions.com/blog/2014/04/lftp-ftps-and-certificate-verification.html
# variables do not work with 'single quotes' unless they are "'surrounded by doubles'"
- lftp -e "set ssl:verify-certificate no; open mediajackagency.com; user $LFTP_USERNAME $LFTP_PASSWORD; mirror --reverse --verbose build/ /var/www/domains/dev/clients/client/project/build/; bye"
# environment:
# name: staging
# url: http://dev.mediajackagency.com/clients/client/build
# # url: https://stg2.client.co
when: manual
allow_failure: true
build-production:
stage: build
needs: [prepare]
only:
- schedules
before_script:
- apt-get update && apt-get install -y zip
script:
- npm run build
- zip -r build.zip build
# cache:
# paths:
# - build
# <<: *global_cache
# policy: push
artifacts:
paths:
- build.zip
deploy-client:
stage: deploy
needs: [build-production]
tags: [linux]
only:
- schedules
# - master
before_script:
- apt-get update && apt-get install -y lftp
script:
- sh deploy-prod
environment:
name: production
url: http://www.client.co
when: manual
allow_failure: true
The idea is to keep check commands outside of .gitlab-ci.yml. I use Makefile to run something like make check and my .gitlab-ci.yml runs the same make commands that I use locally to check various things before committing.
This way you'll have one place with all/most of your commands (Makefile) and .gitlab-ci.yml will have only CI-related stuff.
I have written a tool to run all GitLab-CI job locally without have to commit or push, simply with the command ci-toolbox my_job_name.
The URL of the project : https://gitlab.com/mbedsys/citbx4gitlab
Years ago I build this simple solution with Makefile and docker-compose to run the gitlab runner in docker, you can use it to execute jobs locally as well and should work on all systems where docker works:
https://gitlab.com/1oglop1/gitlab-runner-docker
There are few things to change in the docker-compose.override.yaml
version: "3"
services:
runner:
working_dir: <your project dir>
environment:
- REGISTRATION_TOKEN=<token if you want to register>
volumes:
- "<your project dir>:<your project dir>"
Then inside your project you can execute it the same way as mentioned in other answers:
docker exec -it -w $PWD runner gitlab-runner exec <commands>..
I recommend using gitlab-ci-local
https://github.com/firecow/gitlab-ci-local
It's able to run specific jobs as well.
It's a very cool project and I have used it to run simple pipelines on my laptop.

Docker compose working_dir issue

I am trying to run a golang app using docker-compose, below is my compose configuration.
version: '2'
services:
#Application container
go:
image: golang:1.8-alpine
ports:
- "80:8080"
links:
- mongodb
environment:
DEBUG: 'true'
PORT: '8080'
working_dir: /go/src/simple-golang-app
command: go run main.go
volumes:
- ./simple-golang-app:/go/src/simple-golang-app
mongodb:
image: mvertes/alpine-mongo:3.2.3
restart: unless-stopped
ports:
- "27017:27017"
On running the compose using command "docker-compose up" i get error "stat main.go: no such file or directory" even when main.go is available in working directory.
it works fine when your host dir layout is
oxo#thor ~/Dropbox/Documents/code/docker/golang_working_dir $ find .
.
./docker-compose.yaml
./simple-golang-app
./simple-golang-app/main.go
so here we
cd ~/Dropbox/Documents/code/docker/golang_working_dir
docker-compose up
for a more complex build involving dependancies I use a Dockerfile :
FROM golang:1.8-alpine
RUN mkdir -p /go/src/simple-golang-app/
COPY simple-golang-app/main.go /go/src/simple-golang-app
WORKDIR /go/src/simple-golang-app
RUN apk add --no-cache git mercurial && go get -v -t ./... && apk del git mercurial
RUN go install ./...
RUN go build
ENV PORT 9000
now update your docker-compose.yaml to use this new image :
old
image: golang:1.8-alpine
new
image: nirmal_golang_alpine:latest
so your commands are
docker build --tag nirmal_golang_alpine
docker-compose up

unable to link gitlab services to own container in .gitlab-ci.yml

I have a simple .gitlab-ci.yml file:
image: docker:latest
services:
- docker:dind
- postgres:9.5
stages:
- build
- test
variables:
STAGING_REGISTRY: "dhub.example.com"
CONTAINER_TEST_IMAGE: ${STAGING_REGISTRY}/${CI_PROJECT_NAME}:latest
before_script:
- docker login -u gitlab-ci -p $DHUB_PASSWORD $STAGING_REGISTRY
build:
stage: build
script:
- docker build --pull -t $CONTAINER_TEST_IMAGE -f Dockerfile-dev .
- docker push $CONTAINER_TEST_IMAGE
test:
stage: test
script:
- docker run --env-file=.environment --link=postgres:db $CONTAINER_TEST_IMAGE nosetests
Everything works fine until the actual test stage. In test I'm unable to access my postgres service.
docker: Error response from daemon: Could not get container for postgres.
I tried to write test like this:
test1:
stage: test
image: $CONTAINER_TEST_IMAGE
services:
- postgres:9.5
script:
- python manage.py test
But in this case, I'm unable to pull this image, because of authentication:
ERROR: Preparation failed: unauthorized: authentication required
Am I missing something?

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