I am a homebrew novice and have a tap with a single package, mark-on-mac (https://github.com/sjbonner/homebrew-tap). The tap is simply a wrapper for the executable of Program MARK for the analysis of mark-recapture data that defines the location for the gcc libraries.
I have updated the formula several times (now on v0.0.7), but the command
brew install mark-on-mac
always finds and installs version v0.0.3. In order to install the up-to-date version I have to specify my tap
brew install sjbonner/tap/mark-on-mac
Here's a listing showing the behaviour when I don't and then do specify the tap
Simons-MBP:homebrew-tap sbonner$ brew info mark-on-mac
mark-on-mac: stable 0.0.3
Command-line version of Dr. Gary White's mark-recapture software
http://warnercnr.colostate.edu/~gwhite/mark/mark.htm
Not installed
From: https://github.com/Homebrew/homebrew-core/blob/master/Formula/mark-on-mac.rb
Simons-MBP:homebrew-tap sbonner$ brew install mark-on-mac
==> Downloading https://github.com/sjbonner/mark-on-mac/archive/v0.0.3.tar.gz
==> Downloading from https://codeload.github.com/sjbonner/mark-on-mac/tar.gz/v
0.8# 2.1######## 12.1############### 22.2###################### 31.3########################### 38.5################################## 48.4########################################## 59.2################################################# 69.1######################################################## 79.0################################################################ 89.7######################################################################## 100.0%
🍺 /usr/local/Cellar/mark-on-mac/0.0.3: 5 files, 4.0MB, built in 6 seconds
Simons-MBP:homebrew-tap sbonner$ brew uninstall mark-on-mac
Uninstalling /usr/local/Cellar/mark-on-mac/0.0.3... (5 files, 4.0MB)
Simons-MBP:homebrew-tap sbonner$ brew info sjbonner/tap/mark-on-mac
sjbonner/tap/mark-on-mac: stable 0.0.7
Command-line version of Dr. Gary White's mark-recapture software
http://warnercnr.colostate.edu/~gwhite/mark/mark.htm
Not installed
From: https://github.com/sjbonner/homebrew-tap/blob/master/mark-on-mac.rb
Simons-MBP:homebrew-tap sbonner$ brew install sjbonner/tap/mark-on-mac
==> Installing mark-on-mac from sjbonner/tap
==> Downloading https://github.com/sjbonner/mark-on-mac/archive/v0.0.7.tar.gz
Already downloaded: /Users/sbonner/Library/Caches/Homebrew/downloads/a0310eb4eafbf40481bd5f010d2e369da2f91c41a203b508c340bfad893fd501--mark-on-mac-0.0.7.tar.gz
🍺 /usr/local/Cellar/mark-on-mac/0.0.7: 5 files, 4MB, built in 3 seconds
Removing: /Users/sbonner/Library/Caches/Homebrew/mark-on-mac--0.0.3.tar.gz... (1.7MB)
Simons-MBP:homebrew-tap sbonner$
Can anyone tell me why this is happening? Why does v0.0.3 get installed by default? How can I stop this?
Thanks in advance!
Simon
It seems the local repository sjbonner/tap is outdated. You need to sync your local repo with the remote one.
# cd into the local repo
cd "$(brew --repo sjbonner/tap)"
# find out the latest commit locally
git log -s -1
# compare the commit with your remote repo
# if the repo is outdated, run
brew update
Related
I just got my Mac Pro from the shop after hard drive failure. I am trying to install my environment again.
I installed homebrew from the current link on the homebrew website:
/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install.sh)"
but I cannot install ANY package. Brew cannot find ANYTHING.
~ brew install rbenv
Error: No available formula with the name "rbenv"
==> Searching for a previously deleted formula (in the last month)...
Error: No previously deleted formula found.
==> Searching for similarly named formulae...
Error: No similarly named formulae found.
==> Searching taps...
==> Searching taps on GitHub...
Error: No formulae found in taps.
What is wrong?
I had the same issue and I was able to solve it by running the doctor command and follow the steps which need to be updated there.
My homebrew-core was not at the master branch.
brew doctor
git -C $(brew --repo homebrew/core) checkout master
And that's it. After that, I was able to run the rbenv install command.
brew search result
$ brew search rbenv
==> Formulae
rbenv rbenv-bundle-exec rbenv-chefdk rbenv-default-gems rbenv-vars
rbenv-aliases rbenv-bundler rbenv-communal-gems rbenv-gemset rbenv-whatis
rbenv-binstubs rbenv-bundler-ruby-version rbenv-ctags rbenv-use
install rbenv
$ brew install rbenv
==> Downloading https://github.com/rbenv/ruby-build/archive/v20200819.tar.gz
==> Downloading from https://codeload.github.com/rbenv/ruby-build/tar.gz/v20200819
######################################################################## 100.0%
==> Downloading https://homebrew.bintray.com/bottles/rbenv-1.1.2.mojave.bottle.tar.gz
######################################################################## 100.0%
==> Installing dependencies for rbenv: ruby-build
==> Installing rbenv dependency: ruby-build
==> ./install.sh
==> Caveats
ruby-build installs a non-Homebrew OpenSSL for each Ruby version installed and these are never upgraded.
To link Rubies to Homebrew's OpenSSL 1.1 (which is upgraded) add the following
to your /Users/rchen/.bash_profile:
export RUBY_CONFIGURE_OPTS="--with-openssl-dir=$(brew --prefix openssl#1.1)"
Note: this may interfere with building old versions of Ruby (e.g <2.4) that use
OpenSSL <1.1.
==> Summary
🍺 /usr/local/Cellar/ruby-build/20200819: 509 files, 253.6KB, built in 5 seconds
==> Installing rbenv
==> Pouring rbenv-1.1.2.mojave.bottle.tar.gz
🍺 /usr/local/Cellar/rbenv/1.1.2: 36 files, 65KB
==> Caveats
==> ruby-build
ruby-build installs a non-Homebrew OpenSSL for each Ruby version installed and these are never upgraded.
To link Rubies to Homebrew's OpenSSL 1.1 (which is upgraded) add the following
to your /Users/rchen/.bash_profile:
export RUBY_CONFIGURE_OPTS="--with-openssl-dir=$(brew --prefix openssl#1.1)"
Note: this may interfere with building old versions of Ruby (e.g <2.4) that use
OpenSSL <1.1.
version test
$ rbenv --version
rbenv 1.1.2
Trying to upgrade to the latest version of Git. because I get the message "Your version of git is 1.8.5.2. Which has serious security vulnerabilities" I have upgraded via homebrew but it still showing the old version not the new version 2.4.1. Ran the following commands (using osx yosemite version 10.10.1)
brew update
Updated Homebrew from 6cb91e45 to bc541b9d.
==> New Formulae
apache-drill gumbo-parser mlogger
blockhash hebcal moe
==> Deleted Formulae
datamash git-latexdiff shell.fm texwrapper
dupx lilypond sslscan
brew install git
==> Downloading https://homebrew.bintray.com/bottles/git-2.4.1.yosemite.bottle.t
######################################################################## 100.0%
==> Pouring git-2.4.1.yosemite.bottle.tar.gz
==> Caveats
The OS X keychain credential helper has been installed to:
/usr/local/bin/git-credential-osxkeychain
The "contrib" directory has been installed to:
/usr/local/share/git-core/contrib
Bash completion has been installed to:
/usr/local/etc/bash_completion.d
zsh completion has been installed to:
/usr/local/share/zsh/site-functions
==> Summary
🍺 /usr/local/Cellar/git/2.4.1: 1370 files, 31M
but when i do git --version it gives me git version 1.8.5.2 (Apple Git-48). However brew upgrade git gives me
Error: git 2.4.1 already installed
the command which git gives me
/usr/local/bin/git
how can i access the latest version of Git?
just needed restarting now getting 2.4.1!
I have problems installing Spatialite tools on OS X Yosemite, first of all I have read Install Spatialite for python (GeoDjango) on OS X but it didn't help me to resolve the issue.
Here I will provide steps that I did in order to install spatialite with Homebrew.
1) Install latest sqlite3
brew install sqlite
==> Downloading https://homebrew.bintray.com/bottles/sqlite-3.8.8.3.yosemite.bottle.tar.gz
Already downloaded: /Library/Caches/Homebrew/sqlite-3.8.8.3.yosemite.bottle.tar.gz
==> Pouring sqlite-3.8.8.3.yosemite.bottle.tar.gz
==> Caveats
This formula is keg-only, which means it was not symlinked into /usr/local.
Mac OS X already provides this software and installing another version in
parallel can cause all kinds of trouble.
OS X provides an older sqlite3.
Generally there are no consequences of this for you. If you build your
own software and it requires this formula, you'll need to add to your
build variables:
LDFLAGS: -L/usr/local/opt/sqlite/lib
CPPFLAGS: -I/usr/local/opt/sqlite/include
==> Summary
🍺 /usr/local/Cellar/sqlite/3.8.8.3: 9 files, 2.1M
2) Install libspatialite
brew install libspatialite
==> Downloading https://homebrew.bintray.com/bottles/libspatialite-4.2.0_1.yosemite.bottle.tar.gz
Already downloaded: /Library/Caches/Homebrew/libspatialite-4.2.0_1.yosemite.bottle.tar.gz
==> Pouring libspatialite-4.2.0_1.yosemite.bottle.tar.gz
🍺 /usr/local/Cellar/libspatialite/4.2.0_1: 26 files, 17M
3) Install spatialite-tools
brew install spatialite-tools
==> Downloading https://homebrew.bintray.com/bottles/spatialite-tools-4.2.0.yosemite.bottle.3.tar.gz
Already downloaded: /Library/Caches/Homebrew/spatialite-tools-4.2.0.yosemite.bottle.3.tar.gz
==> Pouring spatialite-tools-4.2.0.yosemite.bottle.3.tar.gz
🍺 /usr/local/Cellar/spatialite-tools/4.2.0: 21 files, 804K
4) Looks good so far, lets try to use spatialite
spatialite -version
SQLite header and source version mismatch
2015-02-25 13:29:11 9d6c1880fb75660bbabd693175579529785f8a6b
2014-12-09 01:34:36 f66f7a17b78ba617acde90fc810107f34f1a1f2e
So it looks like spatialite is built on top of sqlite3
(f66f7a17b78ba617acde90fc810107f34f1a1f2e)
but not (9d6c1880fb75660bbabd693175579529785f8a6b)
Current version 3.8.8.3 9d6c1880fb75660bbabd693175579529785f8a6b
Required version 3.8.7.4 f66f7a17b78ba617acde90fc810107f34f1a1f2e
To fix this I need to install manually sqlite 3.8.7.4 instead of 3.8.8.3 which is latest version in homebrew
6) Remove currently installed sqlite
brew remove sqlite
brew unlink sqlite
7) Install sqlite 3.8.7.4
Download tarbal from here https://www.sqlite.org/src/info/f66f7a17b78ba617acde90fc810107f34f1a1f2e and unpack contents
Install with
./configure
sudo make clean
sudo make
sudo make install
8) Try to create spatialite database
spatialite geo.db "SELECT InitSpatialMetaData();"
dyld: lazy symbol binding failed: Symbol not found: _sqlite3_rtree_geometry_callback
Referenced from: /usr/local/lib/libspatialite.7.dylib
Expected in: /usr/local/lib/libsqlite3.0.dylib
dyld: Symbol not found: _sqlite3_rtree_geometry_callback
Referenced from: /usr/local/lib/libspatialite.7.dylib
Expected in: /usr/local/lib/libsqlite3.0.dylib
Trace/BPT trap: 5
So the issue is that it cannot find _sqlite3_rtree_geometry_callback in a library...
Please point me what I did wrong or if there is a better way to install it on OS X
Thank you for your time
After I updated SVN version on my mac using homebrew I'm getting following error:
dyld: Library not loaded: /usr/local/lib/libserf-1.1.3.0.dylib
Referenced from: /Applications/Xcode.app/Contents/Developer/usr/bin/svn
Reason: image not found
Trace/BPT trap: 5
I have no idea what libserf-1.1.3.0.dylib is and where it should be!
Any thought?
[UPDATE 01]
I tried installing serf using following:
brew install serf
and got the following error:
Error: No available formula for serf
also I checked svn dependncies on homebrew by doing brew deps svn there is no serf:
autoconf
automake
libtool
pkg-config
scons
sqlite
Got it working.
If you want the latest svn uninstall and then build from source
brew remove svn
brew install --build-from-source svn
If you want an older version (I needed 1.6.17) then follow the direction here, but replace the line that says brew install with the install command from above (don't forget to remove svn first though)
If anyone has httpd installed with brew these commands worked for me:
brew unlink httpd
brew install svn
brew link httpd
Hope this helps!
I'm setting up a new Mac for development with Ruby on Rails. I have installed XCode (including command line tools), Homebrew, and RVM properly. However, when I try to install the 2.0.0 Ruby version via RVM, I keep having to install libksba, which tries to install the dependency libgpg-error. The log tells me it's downloading the file, but it never does anything. I've let it run for 30 minutes before and still doesn't do anything. The file is supposed to be a few hundred KB, so it's not very large...Below is the code I'm running:
$ brew install libksba
==> Installing libksba dependency: libgpg-error
==> Downloading ftp://ftp.gnupg.org/gcrypt/libgpg-error/libgpg-error-1.11.tar.bz
This will just sit there and do nothing. Is there another repository where I can download the file from and manually install it? It's frustrating to not be able to develop because of simple dependency errors. Any suggestions would be greatly appreciated.
These are the formulas associated with libksba and libpgp-error: Homebrew Libksba Formula and Homebrew Libgpg-Error. Try first updating Homebrew, since the discrepancy between the version shown in your logs and the one in the repo tells me is outdated:
brew update
brew install libksba
If that doenst work, then you can download it from here:
url 'ftp://ftp.gnupg.org/gcrypt/libksba/libksba-1.3.0.tar.bz2'
url 'ftp://ftp.gnupg.org/gcrypt/libgpg-error/libgpg-error-1.11.tar.bz2'
mirror 'http://www.mirrorservice.org/sites/ftp.gnupg.org/gcrypt/libgpg-error/libgpg-error-1.11.tar.gz'
So I found out the problem; my network is running through a 2nd router that was blocking FTP. I skipped the 2nd router and connected to the primary router and brew install libksba worked just fine. Credit goes to fmendez who provided a mirror link that led me to check out the router ports for FTP.
For others coming to this question, the above instructions do work for manually downloading and installing the formulas. I also recommend checking out Homebrew Tips n Tricks for additional help on which commands to run.
You can try the following steps ( Ref from here )
cd /usr/local/src
curl -O ftp://ftp.gnupg.org/gcrypt/libgpg-error/libgpg-error-1.9.tar.gz
tar -xvf libgpg-error-1.9.tar.gz
cd libgpg-error-1.9/
./configure
make
make install
cd ..
curl -O ftp://ftp.gnupg.org/gcrypt/libksba/libksba-1.2.0.tar.bz2
tar -xvf libksba-1.2.0.tar.bz2
cd libksba-1.2.0/
./configure
make
make install