undefined reference when applying patch file - linux-kernel

I am working on a project where I have to make some custom system calls by modifying the kernel files in a VM. I am trying to test that my calls work by applying a patch file to a new snapshot of a VM. However whenever I run the patch file i keep getting this error:
arch/x86/entry/syscall_64.o:(.rodata+0xa78): undefined reference to `__x64_sys_set_tag'
arch/x86/entry/syscall_64.o:(.rodata+0xa80): undefined reference to `__x64_sys_get_tag'
I checked and the calls are both in the syscall_64.tbl so I'm not sure what else could be causing the issue.

after linux 4.19 ,you need to add _64 as your syscall's head
like this

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Error while generating grpc files (--grpc_out: protoc-gen-grpc: Plugin failed with status code 1.)

I’m trying to run the following command to generate grpc files:
protoc --proto_path=$PROTO_PATH --plugin=protoc-gen-grpc=$PLUGIN_GRPC --grpc_out=$OUT/grpc $PROTO_FILES
This results in the following error:
/Users/MYUSERNAME/Downloads/protoc-gen-grpc-java-1.48.1-osx-aarch_64.exe: program not found or is not executable
Please specify a program using absolute path or make sure the program is available in your PATH system variable
--grpc_out: protoc-gen-grpc: Plugin failed with status code 1.
I made sure the file from the error message is located at that path and has also the correct permissions.
-rwxrwxrwx# 1 MYUSERNAME staff 6334176 10 Aug 00:03 protoc-gen-grpc-java-1.48.1-osx-aarch_64.exe
I also tried running the command as sudo.
Generating java or kotlin files with --java_out=$OUT/java --kotlin_out=$OUT/kotlin
works perfectly fine, so the problem is --grpc_out=$OUT/grpc
I also downloaded multiple versions of the protoc-gen-grpc-java-1.48.1-osx-aarch_64.exe file but it always results in the same error. I also tried replacing all path variables (e.g. $PROTO_PATH) with their corresponding values, without any effect. I’m using MacBook with M1Pro chip.
The problem is that M1 Macs aren't supported. They have copied over the osx-x86_64 binary and renamed it for osx-aarch_64 as a workaround to make it easier to run with Rosetta. See here for where that change was made and here for the full conversation about supporting M1 Macs.

Vitis PetaLinux build cant fetch required files while building an application project

I want to build a PetaLinux Image for my Ultra96v2.
I followed this guide up until building my application project in Vitis. It looks promising but then while building the application project for my custom platform, Vitis throws this error:
18:08:28 **** Incremental Build of configuration Debug for project dpu_appl_system ****
make all
Generating bif file for the system project
Executing command '::scw::generate_bif -xpfm /media/user/6b04b610-ff80-4702-a575-b0b1a78fbafb/dpu_pkg/dpu_demo/export/dpu_demo/dpu_demo.xpfm -domains linux_domain -bifpath /media/user/6b04b610-ff80-4702-a575-b0b1a78fbafb/dpu_pkg/dpu_appl_system/Debug/system.bif' on XSCT
sdcard_gen --xpfm /media/user/6b04b610-ff80-4702-a575-b0b1a78fbafb/dpu_pkg/dpu_demo/export/dpu_demo/dpu_demo.xpfm --sys_config dpu_demo --bif /media/user/6b04b610-ff80-4702-a575-b0b1a78fbafb/dpu_pkg/dpu_appl_system/Debug/system.bif --bitstream /media/user/6b04b610-ff80-4702-a575-b0b1a78fbafb/dpu_pkg/dpu_appl/_ide/bitstream/dpu_hardware.bit --sd_file /media/user/6b04b610-ff80-4702-a575-b0b1a78fbafb/dpu_pkg/dpu_appl/Debug/dpu_appl.elf
creating BOOT.BIN using /media/user/6b04b610-ff80-4702-a575-b0b1a78fbafb/dpu_pkg/dpu_appl/_ide/bitstream/dpu_hardware.bit
Running /home/user/Xilinx/Vitis/2021.2/bin/bootgen -arch zynqmp -image /media/user/6b04b610-ff80-4702-a575-b0b1a78fbafb/dpu_pkg/dpu_appl_system/Debug/sd_card_temp/boot.bif -w -o i BOOT.BIN
ERROR:BootGen - syntax error
Line #13, "/media/user/6b04b610-ff80-4702-a575-b0b1a78fbafb/dpu_pkg/dpu_appl_system/Debug/sd_card_temp/boot.bif".
... emo/sw/atf,dpu_demo/boot/bl31.elf
^
[ERROR] : BIF file parsing failed with code 1
Error writing SD card data : Error when running '/home/user/Xilinx/Vitis/2021.2/bin/bootgen -arch zynqmp -image /media/user/6b04b610-ff80-4702-a575-b0b1a78fbafb/dpu_pkg/dpu_appl_system/Debug/sd_card_temp/boot.bif -w -o i BOOT.BIN'
make: *** [makefile:42: package] Error 1
18:08:36 Build Finished (took 7s.643ms)
It specifically shows me, that there is a comma in the path where it searches for the file. The files are available
at the "normal" location, without the "atf,", "dtb,", etc
at the "weird" location. I created the path so the requested path exists for every file that throws an error message, like
/media/user/6b04b610-ff80-4702-a575-b0b1a78fbafb/dpu_pkg/dpu_appl_system/Debug/sd_card_temp/boot.bif". ... emo/sw/atf,dpu_demo/boot/bl31.elf
I created the path with the weird artefact "arf,dpu_demo", with the komma in the path, but still it wont work. Is this some kind of problem with Vitis, like some env variables not set correctly, or is the building mechanism just acting weird? I cant resolve this issue, because I am not able to change the paths it is supposed to look for the files. This hinders me in advancing my project. I work on Ubuntu 20.04.
Can anyone help me out here, please? I would really appreciate it!
I asked this question in the Xilinx Community, too, but unfortunately there was no resonance at all.
Thank you so much in advance!
PLEASE READ THE WHOLE ANSWER FOR ACTUAL SOLUTION
I think I got it now, though I did not verify whether the image actually works on my Ultra96v2, yet.
I noticed, that the weird path with commata is inside of the boot.bif and system.bif.
So the first time I tried to build it, the bif wasnt there, but got created (I assume). The bif was ready then but only had a weird path inside, so I took the makefile (you can find it in debug/sd_card), copied it, and just commented out the line GENERATE_BIF_XSCT_CMD = ${GENERATE_BIF} -xpfm ${XPFM_PATH} -domains ${DOMAINS} -bifpath ${BIF_PATH}.
Then I edited the boot.bif and system.bif and changed the atf,boot, uboot,boot, and dts,boot to just boot, so the BootGen wouldnt look into the directories with the commata anymore, but only the boot-directory which was specified.
Once that was set up, I executed the edited makefile in my console, by going into the sd_card-directory and executing the following command:
make -f <your_edited_makefile>
This means, that you cant press "build" in Vitis, it wont work. You build the content on your own and wont get a green check mark beside the project! Then the sd_card-directory was populated with (I assume) all necessary data to boot the Ultra96v2 from SD card. This was the content:
boot.scr
BOOT.BIN
dpu_appl.elf (your application project name, I guess)
README.txt
system.dtb
The underlying issue seem to have been that the ::scw::generate_bif created a path to look after, which didnt exist. Really weird issue, in my opinion.
UPDATE:
I just made some changes to the PetaLinux config with the petalinux-config command and rebuilt everything. Once I go to the Vitis part, I changed the system.bif within Vitis itself, and the project compiled successfully, also populating the sd_card directory, as it seems.
UPDATE 2:
Everything failed, so I tried to get to the *.bif of the Application System project. I opened it (linux.bif) and edited the "atf,", "dtb," and "uboot," out of it. Since this is only created once and references by the following files, this fixed my issue and the build was completed successfully in Vitis. So just ignore my originial answer and update.
I hope this is working and hope it will help some of you.

rethinkdb CURLOPT_ACCEPT_ENCODING was not declared in this scope error

I am working on installing rethinkdb on my server, which is a CentOS 6.9 machine. I followed all the directions for a CentOS server as described here for CentOS 6. I got all the way to the command scl enable devtoolset-2 -- make but while building, on line 244 of 421, the line that reads build/release/obj/extproc/http_job.o I receive the error "CURLOPT_ACCEPT_ENCODING was not declared in this scope"
I don't know what this means or why the error is popping up, but I can't continue with the build process as long as that error is there.
I found an obscure article that mentions a fix for this particular error. If you go into the rethinkdb folder on the server, you can then navigate to src/extproc/http_job.cc and open that file in a text editor. You can then search for the function void set_default_opts and inside of that function is the line exc_setopt(curl_handle, CURLOPT_ACCEPT_ENCODING, "", "PROTOCOLS); If you just change CURLOPT_ACCEPT_ENCODING to `CURLOPT_ENCODING, you will be able to continue the build process. It worked for me.

JModelica refuses to load libhsl.so

JModelica is refusing to load the file libhsl.so as a shared library, even though I have set the LD_LIBRARY_PATH variable:
Exception of type: OPTION_INVALID in file "../../../../Ipopt/src/Algorithm/IpAlgBuilder.cpp" at line 321:
Exception message: Selected linear solver MA27 not available.
Tried to obtain MA27 from shared library "libhsl.so", but the following error occured:
libhsl.so: cannot open shared object file: No such file or directory
I have tried recompiling and rerunning JModelica in many ways.
I have set LD_LIBRARY_PATH appropriately.
I have run ldconfig.
Nothing seems to help.
How can I fix this?
As of revision 7885 of the JModelica trunk, JModelica egregiously violates the Principle of Least Astonishment.
JModelica suggest you use the script /usr/local/jmodelica/bin/jm_python.sh or what have you to run your JModelica code.
Digging inside of this script, we find the following line:
LD_LIBRARY_PATH=:/root/Ipopt-3.12.4/build/lib/:/usr/local/jmodelica/ThirdParty/Sundials/lib:/usr/local/jmodelica/ThirdParty/CasADi/lib \
Note that LD_LIBRARY_PATH is being overwritten, so it does not matter what you set it as!
Changing this line to:
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/root/Ipopt-3.12.4/build/lib/:/usr/local/jmodelica/ThirdParty/Sundials/lib:/usr/local/jmodelica/ThirdParty/CasADi/lib \
resolves the issues.
This was brought up as a user patch on JModelica's site here on 2015-05-03. A patch was submitted on circa Revision 8185 to fix the issue, but it continued to crop up for me on trunk after that.

F# Microsoft.ParallelArrays not defined

So I downloaded and installed Microsoft Accelerator v2 to use ParallelArrays. I have referenced it in my project but when I try and execute the code from the module in a script file I get:
"The namespace 'ParallelArrays' is not defined
I have followed the instructions on this post:
Microsoft Accelerator library with Visual Studio F#
I've added a reference to the managed version "Microsoft.Accelerator.dll" to my F# project and then added the native "Accelerator.dll" as an item in my solution and set it's 'Copy To Output Directory' to Copy Always.
Still getting the FSI error and inline error in my script file on the '#load ...' line, however the solution builds fine, and no error in the module file.
Any ideas on what I'm missing? I'm sure it's something stupid.
Thanks,
Justin
UPDATE
I tried mydogisbox's advice, which got rid of the error above, but now when I run the code in the .fsx file I get this error instead:
--> Referenced 'F:\Work\GitHub\qf-sharp\qf-sharp\bin\Debug\Microsoft.Accelerator.dll' (file may be locked by F# Interactive process)
[Loading F:\Work\GitHub\qf-sharp\qf-sharp\MonteCarloGPU.fs]
error FS0192: internal error: F:\Work\GitHub\qf-sharp\qf-sharp\Accelerator.dll: bad cli header, rva 0
UPDATE 2
So the bad header error has dissapeared, but now I get this instead:
Microsoft.ParallelArrays.AcceleratorException: Failure to create a DirectX 9 device.
at Microsoft.ParallelArrays.ParallelArrays.ThrowNativeAcceleratorException()
at Microsoft.ParallelArrays.DX9Target..ctor()
at <StartupCode$FSI_0002>.$FSI_0002_MonteCarloGPU.main#() in F:\Work\GitHub\qf- sharp\qf-sharp\MonteCarloGPU.fs:line 14
Stopped due to error
I found this thread on MSDN however the answers proposed as fixes on that thread barely even relate to the question.
http://social.msdn.microsoft.com/Forums/vstudio/en-US/98600646-0345-4f62-a6c5-f03ac9c77179/ms-accelerator?forum=csharpgeneral
My Direct X version is 11, and I imagine that will suffice, however I tried installing DX9 however, it tells me that a newer version is detected therefore cant install.
There are special directives for referencing dlls from fsi. The #load directive loads the .fs file only. You need to use the #r directive to reference the file. You can either use the full path of the file or you can use #I to include the path to the file. More details here. Keep in mind that fsi is completely independent of your project, so all references in your project must be duplicated in fsi for it to access the same types.

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