I'm trying to install cplex API in windows. I'm not super familiar with the programme so I've been using this link from R bloggers
https://www.r-bloggers.com/2017/01/using-cplex-in-r-installing-cplexapi-in-windows-10/
After using the windows command prompt I get the following responses:
R CMD build --no-build-vignettes --no-manual --md5 C:\Users\Rharris\Desktop\cplexAPI
* checking for file 'C:\Users\RHARRIS\Desktop\cplexAPI/DESCRIPTION' ... OK
* preparing 'cplexAPI':
* checking DESCRIPTION meta-information ... OK
* cleaning src
Warning in cleanup_pkg(pkgdir, Log) :
unable to run 'make clean' in 'src'
* checking vignette meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* adding MD5 file
* building 'cplexAPI_1.4.0.tar.gz'
Warning: file 'cplexAPI/cleanup' did not have execute permissions: corrected
Warning: file 'cplexAPI/configure' did not have execute permissions: corrected
C:\Users\RHARRIS>R CMD INSTALL --build --no-multiarch .\cplexAPI_1.4.0.tar.gz
* installing to library 'C:/Users/RHARRIS/Documents/R/win-library/4.0'
* installing *source* package 'cplexAPI' ...
** package 'cplexAPI' successfully unpacked and MD5 sums checked
** using staged installation
Warning in system("sh ./configure.win") : 'sh' not found
ERROR: configuration failed for package 'cplexAPI'
* removing 'C:/Users/RHARRIS/Documents/R/win-library/4.0/cplexAPI'
It seems I have an error in the configure.win file, however I haven't edited it at all after downloading it. When I open it up its a blank file, I'm not sure if thats what I'm supposed to be.
If anyone has any insight to offer here it's be much appreciated.
Looking at this error message "'sh' not found" I suspect you should install cygwin so that the install can use the BourneShell.
If this fails, I guess you can contact the author of the package https://www.th-koeln.de/personen/gabriel.gelius-dietrich/.
Cheers,
Related
I'm currently trying to set up an environment for Yocto project for my personal study.
I was clueless about where to start Yocto so I bought the book Embedded Linux Projects Using Yocto Project Cookbook but it keeps failing to build the environment.
I've run only simple commands. I ran source oe-init-build-env <dir name> to make a directory and ran bitbake core-image-minimal.
But bitbake command keeps giving me errors like this. This is the log.
WARNING: Host distribution "Ubuntu-18.04" has not been validated with this version of the build system; you may possibly experience unexpected failures. It is recommended that you use a tested distribution.
Parsing recipes: 100%
|#################################################################################| Time: 00:00:25Parsing of 891 .bb files complete (0 cached, 891 parsed). 1287 targets, 61 skipped, 0 masked, 0 errors.
NOTE: Resolving any missing task queue dependencies
Build Configuration:
BB_VERSION = "1.24.0"
BUILD_SYS = "x86_64-linux"
NATIVELSBSTRING = "Ubuntu-18.04"
TARGET_SYS = "arm-poky-linux-gnueabi"
MACHINE = "qemuarm"
DISTRO = "poky"
DISTRO_VERSION = "1.7.3"
TUNE_FEATURES = "arm armv5 thumb dsp"
TARGET_FPU = "soft"
meta
meta-yocto
meta-yocto-bsp = "dizzy:58863ad092c9a279e305c841dbb4353de2ecfae8"
NOTE: Preparing runqueue
NOTE: Executing SetScene Tasks
NOTE: Executing RunQueue Tasks
WARNING: Failed to fetch URL http://www.zlib.net/zlib-1.2.8.tar.xz, attempting MIRRORS if available
WARNING: Failed to fetch URL http://www.multiprecision.org/mpc/download/mpc-1.0.2.tar.gz, attempting MIRRORS if available
WARNING: Failed to fetch URL ftp://ftp.gmplib.org/pub/gmp-6.0.0/gmp-6.0.0a.tar.bz2, attempting MIRRORS if available
WARNING: Failed to fetch URL http://ymorin.is-a-geek.org/download/kconfig-frontends/kconfig-frontends-3.12.0.0.tar.xz, attempting MIRRORS if available
WARNING: Failed to fetch URL http://download.gna.org/cryptodev-linux/cryptodev-linux-1.6.tar.gz, attempting MIRRORS if available
WARNING: Checksum failure encountered with download of http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz - will attempt other sources if available
WARNING: Renaming /opt/yocto/poky/qemuarm/downloads/bzip2-1.0.6.tar.gz to /opt/yocto/poky/qemuarm/downloads/bzip2-1.0.6.tar.gz_bad-checksum_2ae3e6c958d83d2855a37f13fe29fd95
WARNING: Failed to fetch URL http://gnome-build-stage-1.googlecode.com/files/uuid-1.6.2.tar.gz, attempting MIRRORS if available
WARNING: Checksum failure encountered with download of http://rpm5.org/files/popt/popt-1.16.tar.gz - will attempt other sources if available
WARNING: Renaming /opt/yocto/poky/qemuarm/downloads/popt-1.16.tar.gz to /opt/yocto/poky/qemuarm/downloads/popt-1.16.tar.gz_bad-checksum_9e09d0bf772649c5ba385c48ba2d3547
WARNING: Failed to fetch URL http://zlib.net/pigz/pigz-2.3.1.tar.gz, attempting MIRRORS if available
WARNING: Checksum failure encountered with download of http://www.rpm5.org/files/rpm/rpm-5.4/rpm-5.4.14-0.20131024.src.rpm;extract=rpm-5.4.14.tar.gz - will attempt other sources if available
WARNING: Renaming /opt/yocto/poky/qemuarm/downloads/rpm-5.4.14-0.20131024.src.rpm to /opt/yocto/poky/qemuarm/downloads/rpm-5.4.14-0.20131024.src.rpm_bad-checksum_6a8d9bc6a7e0162d7ff72fefc9e841e5
WARNING: Failed to fetch URL http://downloads.sourceforge.net/expat/expat-2.1.0.tar.gz, attempting MIRRORS if available
WARNING: Failed to fetch URL ftp://invisible-island.net/byacc/byacc-20140422.tgz, attempting MIRRORS if available
WARNING: Failed to fetch URL http://pkg-shadow.alioth.debian.org/releases/shadow-4.2.1.tar.xz, attempting MIRRORS if available
I checked the URLs in the log and it turned out they are all 404 pages. And most importantly, it terminates by showing this message.
ERROR: Error executing a python function in /opt/yocto/poky/meta/recipes-devtools/gcc/gcc-source_4.9.bb:
The stack trace of python calls that resulted in this exception/failure was:
File: 'do_preconfigure', lineno: 12, function: <module>
0008: cmd = d.expand("sed -i 's/BUILD_INFO=info/BUILD_INFO=/' /opt/yocto/poky/qemuarm/tmp/work-shared/gcc-4.9.1-r0/gcc-4.9.1/gcc/configure")
0009: subprocess.check_output(cmd, stderr=subprocess.STDOUT, shell=True)
0010:
0011:
*** 0012:do_preconfigure(d)
0013:
File: 'do_preconfigure', lineno: 5, function: do_preconfigure
0001:
0002:def do_preconfigure(d):
0003: import subprocess
0004: cmd = d.expand('PATH=/opt/yocto/poky/scripts:/opt/yocto/poky/qemuarm/tmp/sysroots/x86_64-linux/usr/bin/arm-poky-linux-gnueabi:/opt/yocto/poky/qemuarm/tmp/sysroots/qemuarm/usr/bin/crossscripts:/opt/yocto/poky/qemuarm/tmp/sysroots/x86_64-linux/usr/sbin:/opt/yocto/poky/qemuarm/tmp/sysroots/x86_64-linux/usr/bin:/opt/yocto/poky/qemuarm/tmp/sysroots/x86_64-linux/sbin:/opt/yocto/poky/qemuarm/tmp/sysroots/x86_64-linux/bin:/opt/yocto/poky/scripts:/opt/yocto/poky/bitbake/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/c/Program Files/WindowsApps/CanonicalGroupLimited.Ubuntu18.04onWindows_1804.2020.824.0_x64__79rhkp1fndgsc:/mnt/c/WINDOWS/system32:/mnt/c/WINDOWS:/mnt/c/WINDOWS/System32/Wbem:/mnt/c/WINDOWS/System32/WindowsPowerShell/v1.0/:/mnt/c/WINDOWS/System32/OpenSSH/:/mnt/c/Users/kimth/AppData/Local/Microsoft/WindowsApps:/mnt/c/Users/kimth/AppData/Local/Programs/MiKTeX 2.9/miktex/bin/x64/:/mnt/c/Users/kimth/AppData/Roaming/TinyTeX/bin/win32:/snap/bin cd /opt/yocto/poky/qemuarm/tmp/work-shared/gcc-4.9.1-r0/gcc-4.9.1 && gnu-configize')
*** 0005: subprocess.check_output(cmd, stderr=subprocess.STDOUT, shell=True)
0006: # See 0044-gengtypes.patch, we need to regenerate this file
0007: bb.utils.remove(d.expand("/opt/yocto/poky/qemuarm/tmp/work-shared/gcc-4.9.1-r0/gcc-4.9.1/gcc/gengtype-lex.c"))
0008: cmd = d.expand("sed -i 's/BUILD_INFO=info/BUILD_INFO=/' /opt/yocto/poky/qemuarm/tmp/work-shared/gcc-4.9.1-r0/gcc-4.9.1/gcc/configure")
0009: subprocess.check_output(cmd, stderr=subprocess.STDOUT, shell=True)
File: '/usr/lib/python2.7/subprocess.py', lineno: 223, function: check_output
0219: if retcode:
0220: cmd = kwargs.get("args")
0221: if cmd is None:
0222: cmd = popenargs[0]
*** 0223: raise CalledProcessError(retcode, cmd, output=output)
0224: return output
0225:
0226:
0227:def list2cmdline(seq):
Exception: CalledProcessError: Command 'PATH=/opt/yocto/poky/scripts:/opt/yocto/poky/qemuarm/tmp/sysroots/x86_64-linux/usr/bin/arm-poky-linux-gnueabi:/opt/yocto/poky/qemuarm/tmp/sysroots/qemuarm/usr/bin/crossscripts:/opt/yocto/poky/qemuarm/tmp/sysroots/x86_64-linux/usr/sbin:/opt/yocto/poky/qemuarm/tmp/sysroots/x86_64-linux/usr/bin:/opt/yocto/poky/qemuarm/tmp/sysroots/x86_64-linux/sbin:/opt/yocto/poky/qemuarm/tmp/sysroots/x86_64-linux/bin:/opt/yocto/poky/scripts:/opt/yocto/poky/bitbake/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/c/Program Files/WindowsApps/CanonicalGroupLimited.Ubuntu18.04onWindows_1804.2020.824.0_x64__79rhkp1fndgsc:/mnt/c/WINDOWS/system32:/mnt/c/WINDOWS:/mnt/c/WINDOWS/System32/Wbem:/mnt/c/WINDOWS/System32/WindowsPowerShell/v1.0/:/mnt/c/WINDOWS/System32/OpenSSH/:/mnt/c/Users/kimth/AppData/Local/Microsoft/WindowsApps:/mnt/c/Users/kimth/AppData/Local/Programs/MiKTeX 2.9/miktex/bin/x64/:/mnt/c/Users/kimth/AppData/Roaming/TinyTeX/bin/win32:/snap/bin cd /opt/yocto/poky/qemuarm
I feel like I need to modify conf files to fetch available URLs but I'm new to Yocto and Bitbake so I'm very lost now. I would appreciate if anyone could tell me where to find solutions. Thank you and stay safe everyone.
You seem to use quite an old yocto version 1.7.3 while there is already 3.3 released. This means also you try to build recipes for some packages that are also old and hence some URLs might be unavailable. Might it be an option for you to use a newer version?
If this is no option for you, one thing to try would be setting MIRROR (see [1]) to a mirror [2] where those packages are still available. But this approach I would not prefer.
[1] https://www.yoctoproject.org/docs/1.7/bitbake-user-manual/bitbake-user-manual.html#var-MIRRORS
[2] could be: http://downloads.yoctoproject.org/mirror/sources/
1.7.3 is a very old release of the project, originally released in 2015 with a last point release in 2016. The fetcher warnings you see aren't the problem, they're warnings but it will fall back to the project mirrors. If it hadn't fallen back correctly, it would have shown errors as well as the warnings. The bigger problem is in fact this:
WARNING: Host distribution "Ubuntu-18.04" has not been validated with this version of the build system; you may possibly experience unexpected failures. It is recommended that you use a tested distribution.
Since Ubuntu 18.04 is three years newer than the project release you're using, there is no way it would be compatible with that release. You need to use a host OS from the era of the release, so Ubuntu 16.04 may work better. This is because the host OS provides gcc used to build the cross tools and the newer gcc versions don't tend to work with 100% of old code without tweaks.
So in short, use an older distro if you want to try and get that to build.
ERROR at //third_party/openssh-portable/fuchsia/developer-keys/BUILD.gn:10:24: Could not read file.
manifest = read_file("//.fx-ssh-path", "list lines")
^---------------
I resolved this to "/home/shivkumar/fuchsia_os/fuchsia/.fx-ssh-path".
See //products/core.gni:102:3: which caused the file to be included.
"//third_party/openssh-portable/fuchsia/developer-keys:ssh_config",
^-----------------------------------------------------------------
ERROR: error running gn gen: exit status 1
This error means that the //.fx-ssh-path file does not exist, or is otherwise unreadable. This file is typically generated on source checkout when the integration manifest runs //tools/ssh-keys/gen-ssh-keys.sh as a jiri hook.
To correct the problem, use gen-ssh-keys.sh again to re-generate the file(s) before setting your build configuration:
$ tools/ssh-keys/gen-ssh-keys.sh
$ fx set core.qemu-x64
Note: Hooks are also run anytime you run jiri update so you could also resync the source tree to correct the issue.
I installed Julia v0.6.2 on Windows 10.
Every other package was installed without a problem, but Mongo.jl give me this error while building it.
Pkg.build("Mongo")
INFO: Building LibBSON
===============================[ ERROR: LibBSON ]===============================
LoadError: None of the selected providers can install dependency libbson.
Use BinDeps.debug(package_name) to see available providers
while loading C:\Users\"user"\.julia\v0.6\LibBSON\deps\build.jl, in expression starting on line 27
================================================================================
INFO: Building Mongo
================================[ ERROR: Mongo ]================================
LoadError: None of the selected providers can install dependency libmongoc.
Use BinDeps.debug(package_name) to see available providers
while loading C:\Users\"user"\.julia\v0.6\Mongo\deps\build.jl, in expression starting on line 26
================================================================================
================================[ BUILD ERRORS ]================================
WARNING: LibBSON and Mongo had build errors.
- packages with build errors remain installed in C:\Users\ciko9\.julia\v0.6
- build the package(s) and all dependencies with Pkg.build("LibBSON", "Mongo")
- build a single package by running its deps/build.jl script
================================================================================
I already opened an issue on github, but I'd like to fix it asap. Any idea on how to solve this problem?
The solution is first to install manually the mongo c drivers.
Second, to copy the mongo-c-drivers folder to the mongo e libbson folder inside julia, then make a new file deps.jl for each package and write this:
# Macro to load a library
macro checked_lib(libname, path)
((VERSION >= v"0.4.0-dev+3844" ? Base.Libdl.dlopen_e : Base.dlopen_e)(path) == C_NULL) && error("Unable to load \n\n$libname ($path)\n\nPlease re-run Pkg.build(package), and restart Julia.")
quote const $(esc(libname)) = $path end
end
# Load dependencies
#checked_lib libbson "C:\\Users\\"userName"\\.julia\\v0.6\\LibBSON\\mongo-c-driver\\bin\\libbson-1.0.dll"
# Load-hooks
I'm struggling with an error whilst trying to compile GIT. I've searched Google and the GIT source issues/bugs for similar issues but i've not found anything to help me.
Originally I received the following error
root#teemo:/usr/src/git# make prefix=/usr install install-doc install-html install-info;
CC http-push.o
In file included from cache.h:39:0,
from http-push.c:1:
/usr/include/zlib.h:34:19: fatal error: zconf.h: No such file or directory
#include "zconf.h"
^
compilation terminated.
make: *** [http-push.o] Error 1
I created a symbolic link inside /usr/include/ to the missing file as follows (after I had installed/compiled the latest/development version)
root#teemo:/usr/src/git# ln -s /usr/include/x86_64-linux-gnu/zconf.h /usr/include
Which brings me to the current issue, which I am confused as to how to solve. If someone could advise it would be greatly appreciated.
root#teemo:/usr/src/git# make prefix=/usr install install-doc install-html install-info;
CC http-push.o
In file included from /usr/include/curl/curl.h:35:0,
from http.h:6,
from http-push.c:5:
/usr/include/curl/curlrules.h:142:3: error: size of array '__curl_rule_01__' is negative
__curl_rule_01__
^
/usr/include/curl/curlrules.h:152:3: error: size of array '__curl_rule_02__' is negative
__curl_rule_02__
^
make: *** [http-push.o] Error 1
Read higher up in curlrules.h. That error is intentionally forced as part of a test that checks the size of data types.
* NOTE 2
* ------
*
* Some of the following compile time checks are based on the fact
* that the dimension of a constant array can not be a negative one.
* In this way if the compile time verification fails, the compilation
* will fail issuing an error. The error description wording is compiler
* dependent but it will be quite similar to one of the following:
*
* "negative subscript or subscript is too large"
* "array must have at least one element"
* "-1 is an illegal array size"
* "size of array is negative"
*
* If you are building an application which tries to use an already
* built libcurl library and you are getting this kind of errors on
* this file, it is a clear indication that there is a mismatch between
* how the library was built and how you are trying to use it for your
* application. Your already compiled or binary library provider is the
* only one who can give you the details you need to properly use it.
Your version of libcurl was built with different options than you're using in your current git build. (it could be 32 vs 64 bit)
Knowing what platform you're on and your build options might be enough others to help resolve it. If this is the common case, and you're on Linux or another supported platform, it'd be easier just to install a prebuilt binary using the native software management. Git downloads
In case system reports __curl_rule_01__ or __curl_rule_02__ is negative make the following changes to /usr/include/curl/curlbuild.h:
Add the following lines:
define CURL_SIZEOF_LONG 4
define CURL_SIZEOF_CURL_OFF_T 4
(Or replace similar lines if these are already defined)
I installed sp and automap libraries to my R 3.0.1 64-bit under Windows 7 (via install.packages command). Installation of them did not display any error and library(sp) works fine however when I try to execute library(automap) I get the following error:
> library(automap)
Error in gzfile(file, "rb") : cannot open the connection
In addition: Warning messages:
1: In read.dcf(file.path(p, "DESCRIPTION"), c("Package", "Version")) :
cannot open compressed file 'C:/Program Files/R/R-3.0.1/library/sp/DESCRIPTION', probable reason 'No such file or directory'
2: In gzfile(file, "rb") :
cannot open compressed file '', probable reason 'Invalid argument'
I looked from the path and indeed there is no DESCRIPTION file (or folder) in that path. However there is just libs folder under which folder x64 and inside it file sp.dll
Any idea what could cause this?
I would definitely try to run R as administrator, both for installing the packages and loading them. This could solve your problem.
This probably has to do with file permissions. When you install the packages as admin in a location where only admin can read/write, running R as a normal user means you do not have the file permissions needed to load the package. Running R as admin will solve this, as admin does have the correct permissions.
Alternatively, you could install your R packages in a location where a normal user has read/write persmissions, e.g. C:/Users/UserName (or something like that, I do not have my windows machine accesible right now).