I've tried to install DAMASK for study but faced many problems with it. There's nobody at university to help me with these problems, so I'm lookin' for help here.
For installing and working, DAMASK requires Cmake with gcc and gfortran and many programmer things like PETSc, scipy and numpy. I successfully installed all of that using homebrew, but cmake cause trouble. It doesn't seem to find gcc and gfortran at default.
With gcc I used
CC=/usr/bin/gcc
and it worked.
But it doesn't working with FC, 'cause
FC=/usr/bin/gfortran
not working
even
FC=/usr/local/cellar/gcc/10.2.0_4/bin/gfortran-10
not working
ah, I'm using Macos Catalina and the code of the whole errors there:
MacBook-Pro-Andrej:DAMASK admin1$ make spectral
/var/folders/yb/bvc9yx0s2mx4yts18q2hfblw0000gp/T/tmp.XzJ43HLr/Makefile.petsc:4: /lib/petsc/conf/rules: No such file or directory
/var/folders/yb/bvc9yx0s2mx4yts18q2hfblw0000gp/T/tmp.XzJ43HLr/Makefile.petsc:5: /lib/petsc/conf/variables: No such file or directory
make[1]: *** No rule to make target `/lib/petsc/conf/variables'. Stop.
/var/folders/yb/bvc9yx0s2mx4yts18q2hfblw0000gp/T/tmp.XzJ43HLr/Makefile.petsc:4: /lib/petsc/conf/rules: No such file or directory
/var/folders/yb/bvc9yx0s2mx4yts18q2hfblw0000gp/T/tmp.XzJ43HLr/Makefile.petsc:5: /lib/petsc/conf/variables: No such file or directory
make[1]: *** No rule to make target `/lib/petsc/conf/variables'. Stop.
/var/folders/yb/bvc9yx0s2mx4yts18q2hfblw0000gp/T/tmp.XzJ43HLr/Makefile.petsc:4: /lib/petsc/conf/rules: No such file or directory
/var/folders/yb/bvc9yx0s2mx4yts18q2hfblw0000gp/T/tmp.XzJ43HLr/Makefile.petsc:5: /lib/petsc/conf/variables: No such file or directory
make[1]: *** No rule to make target `/lib/petsc/conf/variables'. Stop.
/var/folders/yb/bvc9yx0s2mx4yts18q2hfblw0000gp/T/tmp.XzJ43HLr/Makefile.petsc:4: /lib/petsc/conf/rules: No such file or directory
/var/folders/yb/bvc9yx0s2mx4yts18q2hfblw0000gp/T/tmp.XzJ43HLr/Makefile.petsc:5: /lib/petsc/conf/variables: No such file or directory
make[1]: *** No rule to make target `/lib/petsc/conf/variables'. Stop.
/var/folders/yb/bvc9yx0s2mx4yts18q2hfblw0000gp/T/tmp.XzJ43HLr/Makefile.petsc:4: /lib/petsc/conf/rules: No such file or directory
/var/folders/yb/bvc9yx0s2mx4yts18q2hfblw0000gp/T/tmp.XzJ43HLr/Makefile.petsc:5: /lib/petsc/conf/variables: No such file or directory
make[1]: *** No rule to make target `/lib/petsc/conf/variables'. Stop.
Found PETSC_DIR:
Found PETSC_INCLUDES:
Found PETSC_EXTERNAL_LIB:
Found PETSC_LINKER:
Found MPI Fortran Compiler:
Found MPI C Compiler:
-- The Fortran compiler identification is unknown
CMake Error at CMakeLists.txt:109 (project):
No CMAKE_Fortran_COMPILER could be found.
Tell CMake where to find the compiler by setting either the environment
variable "FC" or the CMake cache entry CMAKE_Fortran_COMPILER to the full
path to the compiler, or to the compiler name if it is in the PATH.
-- Configuring incomplete, errors occurred!
See also "/Users/admin1/DAMASK/CMakeFiles/CMakeOutput.log".
See also "/Users/admin1/DAMASK/CMakeFiles/CMakeError.log".
make: *** [build/spectral] Error 1
I don't know anything in UNIX programming but I was told to do it if I want to write my
thesis and my diploma...
So I'm lookin' for help here...
Related
[ 59%] Compiling bitmap2component's resource file
gcc: error: Sanchez/AppData/Roaming/SPB_Data/src/MINGW-Packages/mingw-w64-kicad-git/src/kicad/bitmap2component: No such file or directory
E:\Documents2\MSYSkicadbuild\mingw64\bin\windres.exe: preprocessing failed.
make[2]: *** [bitmap2component/CMakeFiles/bitmap2component.dir/build.make:62: bitmap2component/CMakeFiles/bitmap2component.dir/bitmap2component_rc.obj] Error 1
make[1]: *** [CMakeFiles/Makefile2:1979: bitmap2component/CMakeFiles/bitmap2comp onent.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
Compiled kicad on msys2 followed http://kicad-source-mirror.readthedocs.io/en/latest/Documentation/development/compiling/index.html#building-kicad-from-source
It says there is no such file or directory but there is...
MSYS ~/src/MINGW-Packages/mingw-w64-kicad-git/src/kicad
$ ls
_clang-format cvpcb lib_dxf README.txt
3d-viewer demos new resources
AUTHORS.txt Documentation pagelayout_editor scripting
**bitmap2component** Doxyfile patches scripts
bitmaps_png eeschema pcb_calculator template
CMakeLists.txt gerbview pcbnew TODO.txt
CMakeModules helpers plugins tools
common include polygon uncrustify.cfg
copyright.h INSTALL.txt potrace utils
CTestConfig.cmake kicad qa
this is what is inside bitmap2component
bitmap2cmp_gui.cpp bitmap2component.cpp CMakeLists.txt
bitmap2cmp_gui_base.cpp bitmap2component.h Info.plist
bitmap2cmp_gui_base.fbp bitmap2component.icns
bitmap2cmp_gui_base.h bitmap2component.rc
I must be missing something a path or file idk any help would be appreciated.
ohh not sure if this help figure anything out but it will keep compiling to around 71% and then tell me something about eeschema_kiface error.
I am installing some NASA's software (HEASoft) from the source code on Cygwin (32-bit) running on Windows 10. Configure ran successfully, but make gives the following errors:
Makefile:26: /home/Mario/heasoft-6.21/heacore/BUILD_DIR/Makefile-std: No such file or directory
gmake[2]: *** No rule to make target '/home/Mario/heasoft-6.21/heacore/BUILD_DIR/Makefile-std'. Stop.
gmake[2]: Leaving directory 'C:/cygwin/home/Mario/heasoft-6.21/heacore/BUILD_DIR'
make[1]: *** [Makefile:74: heacore] Error 2
make[1]: se sale del directorio '/home/Mario/heasoft-6.21/BUILD_DIR'
make: *** [Makefile:10: all] Error 2
My problem is that the file /home/Mario/heasoft-6.21/heacore/BUILD_DIR/Makefile-std is not found; however, it actually exists and is located in the correct directory. EDIT: here it can be seen that this file exists:
$ ls /home/Mario/heasoft-6.21/heacore/BUILD_DIR
config.guess config.sub hd_config_info headas-init.csh headas-setup.in hmakerc lhea-fixperl Makefile-CCfits
config.log configure hd_install.c headas-init.sh hmake hmakerc.in Makefile Makefile-std
config.status configure.in hd_scanenv headas-setup hmake_hd install-sh Makefile.in
Any clue why this might be happening and how can be solved?
When Cygwin shell is opened cd /cygdrive/c/home/Mario and run make on your project from that directory. I remember I had similar issue when the current directory was /home/foo. I got it solved just changing the directory to /cygdrive/c/home/foo which is definitely is the same directory, but somehow Cygwin's Make likes it better
I am new to compiling.
I am trying to compile iperf3 for Windows 10 because there is no official Windows distribution of iperf3 and for the learning experience. I am trying to do so on the new Windows Subsystem for Linux feature via Bash on Ubuntu on Windows, also for the learning experience.
I installed mingw-w64, which should give me the proper compiler and environment necessary for cross-compiling:
sudo apt-get install mingw-w64
This put two directories into my /usr directory:
i686-w64-mingw32
x86_64-w64-mingw32
It also put a bunch of things that look like compilers into /usr/bin.
I unzipped the .tar.gz file from iperf3 and navigated into it. Then, I run ./configure --host=i686-w64-mingw32.static and it completes without errors.
I note that the output of the command has a worrisome line: checking for i686-w64-mingw32.static-gcc... no
I note that the Makefile's CC variable is set to gcc, which doesn't sound like the proper compiler.
Then, I run make. It fails with errors:
collect2: error: ld returned 1 exit status
make[2]: *** [iperf3] Error 1
make[2]: Leaving directory `/home/snip/iperf3/iperf-3.1.4/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/snip/iperf3/iperf-3.1.4/src'
make: *** [all-recursive] Error 1
I also see the line: libtool: warning: undefined symbols not allowed in i686-w64-mingw32.static shared libraries; building static only
I think that the ./configure is not working correctly since it appears to have not found the right compiler for my --host argument and put it in the Makefile.
What am I doing wrong?
EDIT:
I changed the command to ./configure --host=i686-w64-mingw32 per comments and it completes without error. But no makefile is created so make yields make: *** No targets specified and no makefile found. Stop.
What am I doing wrong, now?
EDIT 2:
Looks like the ./configure actually is failing. Last line of its output is nanosleep() required for timing operations., which seems to mean that its missing a library for nanosleep.
How do I get nanosleep?
mingw doesn't support nanosleep. So programs using it cannot be compiled using mingw-w64.
I am trying to compile GCC for Cygwin with support for targeting i386-elf so I can compile some simple OSes (search Benu, by l30nard0, on Github). I've successfully compiled the binutils for i386-elf, and compiled all of GCC's floating-point numbers dependencies.
Problem is, it says windows.h can not be found. I do have w32api successfully installed, and tried including each of those one at a time in the include path for GCC, but none of them work. If I try any of them, I get so many errors and warnings that not all will show up in the Cygwin console. The dozens upon dozens of warnings are most if not all unused parameter.
Does anyone know where the problem might lie?
I've wasted the last three entire days of my life trying to get Linux Mint set up with everything I want, but for reasons I shan't go into I gave up on that. I'd love to be able to get just one thing to work so I can enjoy my life again. :) Thanks!
BTW: The configure arguments I used were --target=i386-elf --enable-threads=win32 --enable-languages=c,c++ Was I supposed to use --enable-targets instead?
And here's part of the log:
In file included from ../../../gcc/libgcc/gthr.h:150:0,
from ../../../gcc/libgcc/unwind-dw2.c:38:
./gthr-default.h:541:21: fatal error: windows.h: No such file or directory
compilation terminated.
../../../gcc/libgcc/static-object.mk:17: recipe for target 'unwind-dw2.o' failed
make[2]: *** [unwind-dw2.o] Error 1
make[2]: *** Waiting for unfinished jobs....
In file included from ../../../gcc/libgcc/gthr.h:150:0,
from ../../../gcc/libgcc/unwind-dw2-fde.c:38:
./gthr-default.h:541:21: fatal error: windows.h: No such file or directory
compilation terminated.
../../../gcc/libgcc/static-object.mk:17: recipe for target 'unwind-dw2-fde.o' failed
make[2]: *** [unwind-dw2-fde.o] Error 1
make[2]: Leaving directory '/home/Sean/gccbuild/i386-elf/libgcc'
Makefile:10055: recipe for target 'all-target-libgcc' failed
make[1]: *** [all-target-libgcc] Error 2
make[1]: Leaving directory '/home/Sean/gccbuild'
Makefile:870: recipe for target 'all' failed
make: *** [all] Error 2
Remove the --enable-threads=win32 flag; it is intended to specify thread support on the target system, not the build system.
I have access to a server (but don't have root permissions on there). To cut a long story short the admin won't upgrade to the newer version of gcc that I need, but has suggested that I can just install it locally.
I'm having some issues doing this, despite trying to follow the guide at http://gcc.gnu.org/install/index.html. I want to use the new versions of GMP, MPFR, and MPC that are installed now on the server.
I first go into my home dir on the server then mkdir mygcc which I then cd into (this is to be the build dir and is not a sub-dir of src dir), from there I do
/home/username/gcc-4.6.3/configure --with-gmp="/software/gmp-5.0.5" --with-
gmp-include="/software/gmp-5.0.5/include" --with-gmp-lib="/software/gmp-5.0.5/lib"
--with-mpfr="/software/mpfr-3.1.1" --with-mpfr-include="/software/mpfr-3.1.1/include"
--with-mpfr-lib="/software/mpfr-3.1.1/lib" --with-mpc-include="/home/username/usr/local
/include" --with-mpc-lib="/home/username/usr/local/lib" --prefix="/home/username/mygcc"
--with-local-prefix="/home/username/usr/local"
the src files that I unzipped are at /home/pmxlh1/gcc-4.6.3.
I also made the directories /home/username/usr/include, /home/username/usr/local etc and set the prefix flags to try and install various things there, but it also fails if I just leave those flags out for the same reasons.
When I get to make however it ends with
checking for suffix of object files... configure: error: in `/home/pmxlh1/mygcc/x86_64-
unknown-linux-gnu/libgcc':
configure: error: cannot compute suffix of object files: cannot compile
See `config.log' for more details.
make[2]: *** [configure-stage1-target-libgcc] Error 1
make[2]: Leaving directory `/home/pmxlh1/mygcc'
make[1]: *** [stage1-bubble] Error 2
make[1]: Leaving directory `/home/pmxlh1/mygcc'
make: *** [all] Error 2
Not sure if I'm going about this the correct way? But basically I want to install it in my home/dir and so that it uses the correct GMP/MPFR/MPC not the old versions that maybe lurking elsewhere on the server.
thanks for any help