Anyone have a clean process for converting samples on macOS to FlameGraphs?
After a bit of fiddling I thought I could perhaps use a tool such as flamegraph-sample, but it seems to give me some trouble and so I thought perhaps there may be other more up-to-date options that I'm missing insomuch that this tool gives an error:
$ sudo sample PID -file ~/tmp/sample.txt -fullPaths 1
Sampling process 198 for 1 second with 1 millisecond of run time between samples
Sampling completed, processing symbols...
Sample analysis of process 35264 written to file ~/tmp/sample.txt
$ python stackcollapse-sample.py ~/tmp/sample.txt > ~/tmp/sample_collapsed.txt
$ flamegraph.pl ~/tmp/sample_collapsed.txt > ~/tmp/sample_collapsed_flamegraph.svg
Ignored 2335 lines with invalid format
ERROR: No stack counts found
I'm developing an application that runs some shell commands, and I want to print the shell output in my web app in a pretty way. I tried some syntax highlighters, but it doesn't recognize the colors or break lines for example.
Here is an output example:
FAIL tmp/jest_client/0052ba7f-1c68-4f16-924f-5d44fa0ea415.test.js (5.511s)↵ some↵ ✕ returns 2 (3ms)↵↵ ● some › returns 2↵↵ ReferenceError: some is not defined↵ ↵ at Object.<anonymous> (tmp/jest_client/0052ba7f-1c68-4f16-924f-5d44fa0ea415.test.js:5:11)↵↵Test Suites: 1 failed, 1 total↵Tests: 1 failed, 1 total↵Snapshots: 0 total↵Time: 13.869s↵Ran all test suites matching /tmp/jest_client/0052ba7f-1c68-4f16-924f-5d44fa0ea415.test.js/i.↵
Thaks for your help!
To solve this problem, I used the aha Linux package.
I have reason to believe that my iPython interpreter is causing my kernel to die and restart similar to the issues logged in this link and that link.
The latter link indicates that the error is caused by the fact that the debugger outputs step-by-step ipdb content into the interpreter. One user reported that the behavior stopped when he (and I quote)
disabled logging to console before running in debug mode
How does one "disable logging to console" in Spyder IDE/IPython? I really need to do this so I can at least step through my code....
EDIT
I would like to suppress this kind of output
ipdb> > d:\temp\other const models\plaxis\output\plotparfile.py(16)PlotParFile()
14 with open(filename,'r') as fid:
15 lines = fid.readlines()
---> 16 fid.close()
17 #split first line get header and pop it out
18 header = lines[0].split()
> d:\temp\other const models\plaxis\output\plotparfile.py(18)PlotParFile()
16 fid.close()
17 #split first line get header and pop it out
---> 18 header = lines[0].split()
19 lines.pop(0)
20
(Spyder developer here) That output is generated automatically and its purpose is to tell you where are you placed in your code while debugging.
Right now there are no options in Spyder to deactivate it. Besides, I really doubt that output could be the cause of any kernel failures.
When searching for an occurrence of text in a PostScript file, I receive the following error:
gsapi_run_string_continue returns -21
The API documentation specifies that return codes > 0 are "Error" but doesn't describe it any more specifically. Full error console output below - error occurs twice identically, only one occurrence displayed here.
GPL Ghostscript 9.15 (2014-09-22)
Copyright (C) 2014 Artifex Software, Inc. All rights reserved.
This software comes with NO WARRANTY: see the file PUBLIC for details.
Displaying DSC file C:/Users/c-toothm/Desktop/PRDFlow12_30_2014_050307/1230ouptut.ps
Displaying page 1
%%[ ProductName: GPL Ghostscript ]%%
%%[ LastPage ]%%
Extracting text using pstotext...
Ghostscript returns error code -21`
--- Begin offending input ---
evice /pop , d
initmatrix [1 0 0 1 0 0] concat colspSet`
0.00 43.32 +
0.94 0.95 +S
(XSFT2200041.img) run
EPSFILE2200041 restore
;
0 0 0 sco 5 Lw N 4950 4742 M 4800 4742 I K
0 0 0 sco 5 Lw N 4950 4752 M 4800 4752 I K
0 0 0 sco 5 Lw N 4950 4762 M 4800 476
--- End offending input ---
gsapi_run_string_continue returns -21`
[duplicate error redacted]
Our production output creates a giant .ps file every day and this error occurs in many, but not all, .ps files when searching for text. Randomly selected .ps files from the web do not throw the error, so this GS build seems OK - definitely a problem with my file.
What "offending input" is being referred to here and what can I do to address it?
I'd need to see the PostScript file to tell you exactly what is wrong, but 'evice' is not a PostScript operator and so that is likely the problem. Also, from ghostpdl/gs/psi/ierrors.h error code -21 is e_undefined which means the interpreter has encountered an undefined token, which is some confirmation that this is the problem.
This could be because the file contains a 'typo' like that (perhaps it should be setpagedevice or something), or it could be because a filter is improperly terminated, or has insufficient data, and consumes extra bytes from the input stream, chewing up your program.
You should start by using the Ghostscript executable and reproduce the error with that (you might also try the display device, to see whether the problem is related to pstotext), that will allow you to give a command line which other people can then duplicate. With that, and a copy of the offending file I can tell you exactly what's wrong, without it, not much hope.
Bear in mind that PostScript is an interpreted programming language, so its pretty much impossible to tell you what's wrong with your program without seeing the code.
FWIW you might like to try the Ghostscript txtwrite device instead of pstotext, the device doesn't rely on tinkering with the language like pstotext does. pstotext is also really old (the last release is coming up on its 11th birthday) and unsupported.....
I installed Linpack on a 2-Node cluster with Xeon processors. Sometimes if I start Linpack with this command:
mpiexec -np 28 -print-rank-map -f /root/machines.HOSTS ./xhpl_intel64
linpack starts and prints the output, sometimes I only see the mpi mappings printed and then nothing following. To me this seems like random behaviour because I don't change anything between the calls and as already mentioned, Linpack sometimes starts, sometimes not.
In top I can see that xhpl_intel64processes have been created and they are heavily using the CPU but when watching the traffic between the nodes, iftop is telling me that it nothing is sent.
I am using MPICH2 as MPI implementation. This is my HPL.dat:
# cat HPL.dat
HPLinpack benchmark input file
Innovative Computing Laboratory, University of Tennessee
HPL.out output file name (if any)
6 device out (6=stdout,7=stderr,file)
1 # of problems sizes (N)
10000 Ns
1 # of NBs
250 NBs
0 PMAP process mapping (0=Row-,1=Column-major)
1 # of process grids (P x Q)
2 Ps
14 Qs
16.0 threshold
1 # of panel fact
2 PFACTs (0=left, 1=Crout, 2=Right)
1 # of recursive stopping criterium
4 NBMINs (>= 1)
1 # of panels in recursion
2 NDIVs
1 # of recursive panel fact.
1 RFACTs (0=left, 1=Crout, 2=Right)
1 # of broadcast
1 BCASTs (0=1rg,1=1rM,2=2rg,3=2rM,4=Lng,5=LnM)
1 # of lookahead depth
1 DEPTHs (>=0)
2 SWAP (0=bin-exch,1=long,2=mix)
64 swapping threshold
0 L1 in (0=transposed,1=no-transposed) form
0 U in (0=transposed,1=no-transposed) form
1 Equilibration (0=no,1=yes)
8 memory alignment in double (> 0)
edit2:
I now just let the program run for a while and after 30min it tells me:
# mpiexec -np 32 -print-rank-map -f /root/machines.HOSTS ./xhpl_intel64
(node-0:0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15)
(node-1:16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31)
Assertion failed in file ../../socksm.c at line 2577: (it_plfd->revents & 0x008) == 0
internal ABORT - process 0
APPLICATION TERMINATED WITH THE EXIT STRING: Hangup (signal 1)
Is this a mpi problem?
Do you know what type of problem this could be?
I figured out what the problem was: MPICH2 uses different random ports each time it starts and if these are blocked your application wont start up correctly.
The solution for MPICH2 is to set the environment variable MPICH_PORT_RANGE to START:END, like this:
export MPICH_PORT_RANGE=50000:51000
Best,
heinrich