Repository.saveAll throws InvalidDataAccessApiUsageException - spring

I query a Bugzilla REST API with Spring, which returns a JSON object with the following structure:
https://bugzilla.mozilla.org/rest/bug/35
I have the following JPA class (excerpt):
#Entity
#Table
public class bug {
....
#ManyToOne (fetch = FetchType.EAGER, cascade = CascadeType.ALL)
#JoinColumn (name = "assigned_to_user_id")
#SerializedName ("assigned_to_detail")
protected BugUser assignedTo;
#ManyToMany (cascade = CascadeType.ALL)
#JoinColumn (/ * ... shortened ... * /)
#SerializedName ("c_detail")
protected List <BugUser> cc;
...
}
The web service call takes place with the help of the Spring remainder template. Then the object is mapped from the rest template into my JPA class. However, when the data set is persisted by the Spring repository, I get the following exception:
Caused by: org.springframework.dao.InvalidDataAccessApiUsageException:
Multiple representations of the same entity [BugUser # 2] are being
merged. Detached: [BugUser # 21]; Detached: [BugUser # 12];
As soon as I only comment one member variable of type BugUser in the Bug class, everything works.
How can I work around this problem?

You will have to make sure there is only one object with the same primary key. You can go through the list before merging and do something like the following:
Bug b = ...
BugUser assignee = b.assignedTo;
ListIterator<BugUser> iter = b.cc.listIterator();
while (iter.hasNext()) {
if (assignee.id.equals(iter.next().id) {
iter.set(assignee);
}
}
This way you ensure that the objects in the list of the same primary key are the same as the assignee. That is exactly why Hibernate complains.

Related

Transaction getting rolled back on persisting the entity from Many to one side

I have this association in the DB -
I want the data to be persisted in the tables like this -
The corresponding JPA entities have been modeled this way (omitted getters/setters for simplicity) -
STUDENT Entity -
#Entity
#Table(name = "student")
public class Student {
#Id
#SequenceGenerator(name = "student_pk_generator", sequenceName =
"student_pk_sequence", allocationSize = 1)
#GeneratedValue(strategy = GenerationType.SEQUENCE, generator =
"student_pk_generator")
#Column(name = "student_id", nullable = false)
private Long studentId;
#Column(name = "name", nullable = false)
private String studentName;
#OneToMany(mappedBy = "student", cascade = CascadeType.ALL)
private Set<StudentSubscription> studentSubscription;
}
STUDENT_SUBSCRIPTION Entity -
#Entity
#Table(name = "student_subscription")
#Inheritance(strategy = InheritanceType.JOINED)
public abstract class StudentSubscription {
#Id
private Long studentId;
#ManyToOne(optional = false)
#JoinColumn(name = "student_id", referencedColumnName = "student_id")
#MapsId
private Student student;
#Column(name = "valid_from")
private Date validFrom;
#Column(name = "valid_to")
private Date validTo;
}
LIBRARY_SUBSCRIPTION Entity -
#Entity
#Table(name = "library_subscription",
uniqueConstraints = {#UniqueConstraint(columnNames = {"library_code"})})
#PrimaryKeyJoinColumn(name = "student_id")
public class LibrarySubscription extends StudentSubscription {
#Column(name = "library_code", nullable = false)
private String libraryCode;
#PrePersist
private void generateLibraryCode() {
this.libraryCode = // some logic to generate unique libraryCode
}
}
COURSE_SUBSCRIPTION Entity -
#Entity
#Table(name = "course_subscription",
uniqueConstraints = {#UniqueConstraint(columnNames = {"course_code"})})
#PrimaryKeyJoinColumn(name = "student_id")
public class CourseSubscription extends StudentSubscription {
#Column(name = "course_code", nullable = false)
private String courseCode;
#PrePersist
private void generateCourseCode() {
this.courseCode = // some logic to generate unique courseCode
}
}
Now, there is a Student entity already persisted with the id let's say - 100.
Now I want to persist this student's library subscription. For this I have created a simple test using Spring DATA JPA repositories -
#Test
public void testLibrarySubscriptionPersist() {
Student student = studentRepository.findById(100L).get();
StudentSubscription librarySubscription = new LibrarySubscription();
librarySubscription.setValidFrom(//some date);
librarySubscription.setValidTo(//some date);
librarySubscription.setStudent(student);
studentSubscriptionRepository.save(librarySubscription);
}
On running this test I am getting the exception -
org.springframework.dao.InvalidDataAccessApiUsageException: detached entity passed to persist: com.springboot.data.jpa.entity.Student; nested exception is org.hibernate.PersistentObjectException: detached entity passed to persist: com.springboot.data.jpa.entity.Student
To fix this I attach a #Transactional to the test. This fixed the above exception for detached entity, but the entity StudentSubscription and LibrarySubscription are not getting persisted to the DB. In fact the transaction is getting rolled back.
Getting this exception in the logs -
INFO 3515 --- [ main] o.s.t.c.transaction.TransactionContext : Rolled back transaction for test: [DefaultTestContext#35390ee3 testClass = SpringDataJpaApplicationTests, testInstance = com.springboot.data.jpa.SpringDataJpaApplicationTests#48a12036, testMethod = testLibrarySubscriptionPersist#SpringDataJpaApplicationTests, testException = [null], mergedContextConfiguration = [MergedContextConfiguration#5e01a982 testClass = SpringDataJpaApplicationTests, locations = '{}', classes = '{class com.springboot.data.jpa.SpringDataJpaApplication}', contextInitializerClasses = '[]', activeProfiles = '{}', propertySourceLocations = '{}', propertySourceProperties = '{org.springframework.boot.test.context.SpringBootTestContextBootstrapper=true}', contextCustomizers = set[org.springframework.boot.test.context.filter.ExcludeFilterContextCustomizer#18ece7f4, org.springframework.boot.test.json.DuplicateJsonObjectContextCustomizerFactory$DuplicateJsonObjectContextCustomizer#264f218, org.springframework.boot.test.mock.mockito.MockitoContextCustomizer#0, org.springframework.boot.test.web.client.TestRestTemplateContextCustomizer#2462cb01, org.springframework.boot.test.autoconfigure.actuate.metrics.MetricsExportContextCustomizerFactory$DisableMetricExportContextCustomizer#928763c, org.springframework.boot.test.autoconfigure.properties.PropertyMappingContextCustomizer#0, org.springframework.boot.test.autoconfigure.web.servlet.WebDriverContextCustomizerFactory$Customizer#7c3fdb62, org.springframework.boot.test.context.SpringBootTestArgs#1, org.springframework.boot.test.context.SpringBootTestWebEnvironment#1ad282e0], contextLoader = 'org.springframework.boot.test.context.SpringBootContextLoader', parent = [null]], attributes = map['org.springframework.test.context.event.ApplicationEventsTestExecutionListener.recordApplicationEvents' -> false]]
Now I have couple of questions -
Why am I getting detached entity exception. When we fetch an entity from the DB, Spring Data JPA must be using entityManager to fetch the entity. The fetched entity gets automatically attached to the persistence context right ?
On attaching #Transactional on the test, why the transaction is getting rolledback, and no entity is getting persisted. I was expecting the two entities - StudentSubscription and LibrarySubscription should've been persisted using the joined table inheritance approach.
I tried many things but no luck. Seeking help from, JPA and Spring DATA experts :-)
Thanks in advance.
Let me add a few details that outline a couple of design problems with your code that significantly complicate the picture. In general, when working with Spring Data, you cannot simply look at your tables, create cookie-cutter entities and repositories for those and expect things to simply work. You need to at least spend a bit of time to understand the Domain-Driven Design building blocks entity, aggregate and repository.
Repositories manage aggregates
In your case, Student treats StudentSubscriptions like an entity (full object reference, cascading persistence operations) but at the same time a repository to persist the …Subscriptions exists. This fundamentally breaks the responsibility of keeping consistency of the Student aggregate, as you can simply remove a …Subscription from the store via the repository without the aggregate having a chance to intervene. Assuming the …Subscriptions are aggregates themselves, and you'd like to keep the dependency in that direction, those must only be referred to via identifiers, not via full object representations.
The arrangement also adds cognitive load, as there are now two ways to add a subscription:
Create a …Subscription instance, assign the Student, persist the subscription via the repository.
Load a Student, create a …Subscription, add that to the student, persist the Student via it's repository.
While that's already a smell, the bidirectional relationship between the …Subscription and Student imposes the need to manually manage those in code. Also, the relationships establish a dependency cycle between the concepts, which makes the entire arrangement hard to change. You already see that you have accumulated a lot of (mapping) complexity for a rather simple example.
What would better alternatives look like?
Option 1 (less likely): Students and …Subscriptions are "one"
If you'd like to keep the concepts close together and there's no need to query the subscriptions on their own, you could just avoid those being aggregates and remove the repository for them. That would allow you to remove the back-reference from …Subscription to Student and leave you with only one way of adding subscriptions: load the Student, add a …Subscription instance, save the Student, done. This also gives the Student aggregate its core responsibility back: enforcing invariants on its state (the set of …Subscription having to follow some rules, e.g. at least one selected etc.)
Option 2 (more likely): Students and …Subscriptions are separate aggregates (potentially from separate logical modules)
In this case, I'd remove the …Subscriptions from the Student entirely. If you need to find a Students …Subscriptions, you can add a query to the …SubscriptionRepository (e.g. List<…Subscription> findByStudentId(…)). As a side effect of this you remove the cycle and Student does not (have to) know anything about …Subscriptions anymore, which simplifies the mapping. No wrestling with eager/lazy loading etc. In case any cross-aggregate rules apply, those would be applied in an application service fronting the SubscriptionRepository.
Heuristics summarized
Clear distinction between what's an aggregate and what not (the former get a corresponding repository, the later don't)
Only refer to aggregates via their identifiers.
Avoid bidirectional relationships. Usually, one side of the relationship can be replaced with a query method on a repository.
Try to model dependencies from higher-level concepts to lower level ones (Students with Subscriptionss probably make sense, a …Subscription without a Student most likely doesn't. Thus, the latter is the better relationship to model and solely work with.)
The transaction is getting rolled back because the test is doing DB updates in the test method.
#Transactional does auto rollback if the transaction includes any update DB. Also here is the compulsion to use transaction because EntityManager gets closed as soon as the Student entity gets retrieved, so to keep that open the test has to be within the transactional context.
Probably if I had used a testDB for my testcases then probably spring wouldn't haveve been rolling back this update.
Will setup an H2 testDb and perform the same operation there and will post the outcome.
Thanks for the quick help guys. :-)
Why am I getting detached entity exception. When we fetch an entity from the DB, Spring Data JPA must be using entityManager to fetch the entity. The fetched entity gets automatically attached to the persistent context right ?
Right, but only for as long as the entityManager stays open. Without the transactional, as soon as you return from studentRepository.findById(100L).get();, the entityManager gets closed and the object becomes detached.
When you call the save, a new entityManager gets created that doesn't contain a reference to the previous object. And so you have the error.
The #Trannsaction makes the entity manager stay open for the duration of the method.
At least, that's what I think it's happening.
On attaching #Transactional on the test, why the transaction is getting rolledback,
With bi-directional associations, you need to make sure that the association is updated on both sides. The code should look like:
#Test
#Transactional
public void testLibrarySubscriptionPersist() {
Student student = studentRepository.findById(100L).get();
StudentSubscription librarySubscription = new LibrarySubscription();
librarySubscription.setValidFrom(//some date);
librarySubscription.setValidTo(//some date);
// Update both sides:
librarySubscription.setStudent(student);
student.getStudentSubscription().add(librarySubscription);
// Because of the cascade, saving student should also save librarySubscription.
// Maybe it's not necessary because student is managed
// and the db will be updated anyway at the end
// of the transaction.
studentSubscriptionRepository.save(student);
}
In this case, you could also use EntityManager#getReference:
#Test
#Transactional
public void testLibrarySubscriptionPersist() {
EntityManager em = ...
StudentSubscription librarySubscription = new LibrarySubscription();
librarySubscription.setValidFrom(//some date);
librarySubscription.setValidTo(//some date);
// Doesn't actually load the student
Student student = em.getReference(Student.class, 100L);
librarySubscription.setStudent(student);
studentSubscriptionRepository.save(librarySubscription);
}
I think any of these solutions should fix the issue. Hard to say without the whole stacktrace.

Dynamic JPA query

I have two entities Questions and UserAnswers. I need to make an api in spring boot which returns all the columns from both the entities based on some conditions.
Conditions are:
I will be give a comparator eg: >, <, =, >=, <=
A column name eg: last_answered_at, last_seen_at
A value of the above column eg: 28-09-2020 06:00:18
I will need to return an inner join of the two entities and filter based on the above conditions.
Sample sql query based on above conditions will be like:
SELECT q,ua from questions q INNER JOIN
user_answers ua on q.id = ua.question_id
WHERE ua.last_answered_at > 28-09-2020 06:00:18
The problem I am facing is that the column name and the comparator for the query needs to be dynamic.
Is there an efficient way to do this using spring boot and JPA as I do not want to make jpa query methods for all possible combinations of columns and operators as it can be a very large number and there will be extensive use of if else?
I have developed a library called spring-dynamic-jpa to make it easier to implement dynamic queries with JPA.
You can use it to write the query templates. The query template will be built into different query strings before execution depending on your parameters when you invoke the method.
This sounds like a clear custom implementation of a repository method. Firstly, I will make some assumptions about the implementation of your entities. Afterwards, I will present an idea on how to solve your challenge.
I assume that the entities look basically like this (getters, setters, equals, hachCode... ignored).
#Entity
#Table(name = "questions")
public class Question {
#Id
#GeneratedValue
private Long id;
private LocalDateTime lastAnsweredAt;
private LocalDateTime lastSeenAt;
// other attributes you mentioned...
#OneToMany(mappedBy = "question", cascade = CascadeType.ALL, orphanRemoval = true)
private List<UserAnswer> userAnswers = new ArrayList();
// Add and remove methods added to keep bidirectional relationship synchronised
public void addUserAnswer(UserAnswer userAnswer) {
userAnswers.add(userAnswer);
userAnswer.setQuestion(this);
}
public void removeUserAnswer(UserAnswer userAnswer) {
userAnswers.remove(userAnswer);
userAnswer.setQuestion(null);
}
}
#Entity
#Table(name = "user_answers")
public class UserAnswer {
#Id
#GeneratedValue
private Long id;
#ManyToOne(fetch = FetchType.LAZY)
#JoinColumn(name = "task_release_id")
private Question question;
}
I will write the code with the knowledge about the JPA of Hibernate. For other JPAs, it might work similarly or the same.
Hibernate often needs the name of attributes as a String. To circumvent the issue of undetected mistakes (especially when refactoring), I suggest the module hibernate-jpamodelgen (see the class names suffixed with an underscore). You can also use it to pass the names of the attributes as arguments to your repository method.
Repository methods try to communicate with the database. In JPA, there are different ways of implementing database requests: JPQL as a query language and the Criteria API (easier to refactor, less error prone). As I am a fan of the Criteria API, I will use the Criteria API together with the modelgen to tell the ORM Hibernate to talk to the database to retrieve the relevant objects.
public class QuestionRepositoryCustomImpl implements QuestionRepository {
#PersistenceContext
private EntityManager entityManager;
#Override
public List<Question> dynamicFind(String comparator, String attribute, String value) {
CriteriaBuilder cb = entityManager.getCriteriaBuilder();
CriteriaQuery<Question> cq = cb.createQuery(Question.class);
// Root gets constructed for first, main class in the request (see return of method)
Root<Question> root = cq.from(Question.class);
// Join happens based on respective attribute within root
root.join(Question_.USER_ANSWER);
// The following ifs are not the nicest solution.
// The ifs check what comparator String contains and adds respective where clause to query
// This .where() is like WHERE in SQL
if("==".equals(comparator)) {
cq.where(cb.equal(root.get(attribute), value));
}
if(">".equals(comparator)) {
cq.where(cb.gt(root.get(attribute), value));
}
if(">=".equals(comparator)) {
cq.where(cb.ge(root.get(attribute), value));
}
if("<".equals(comparator)) {
cq.where(cb.lt(root.get(attribute), value));
}
if("<=".equals(comparator)) {
cq.where(cb.le(root.get(attribute), value));
}
// Finally, query gets created and result collected and returned as List
// Hint for READ_ONLY is added as lists are often just for read and performance is better.
return entityManager.createQuery(cq).setHint(QueryHints.READ_ONLY, true).getResultList();
}
}

CRUDRepository findBy foreign key id causing exception: Unable to locate Attribute with the the given name [classroomId] on this ManagedType

I am getting an exception when creating a custom findBy method by a foreign key.
Entity class:
#Entity
#Getter
#Setter
public class Thread {
private #Id #GeneratedValue Long id;
private String subject;
#ManyToOne(fetch = FetchType.LAZY)
#JsonIgnore
private Classroom classroom;
protected Thread() {}
public Long getClassroomId() {
return this.classroom.getId();
}
}
ThreadRepository class:
public interface ThreadRepository extends CrudRepository<Thread, Long> {
List<Thread> findByClassroomId(Long id);
}
I get the exception:
java.lang.IllegalArgumentException: Unable to locate Attribute with the the given name [classroomId] on this ManagedType [com.futurerprood.unicycleservice.entity.threads.Thread]
But the exception goes away if I remove the getClassroomId() in the Thread class. I have this function so that the json serialization will pick up only the classroom id instead of the whole classroom object in an endpoint response.
Why is this function causing the foreign key unable to be found?
You can do one of the following:
Provide the query to the repository method
#Query("select e from Thread t join t.classroom c where c.id = :id")
List<Thread> findByClassroomId(Long id);
Rename the repository method
List<Event> findByClassroom_Id(Long id);
Update
Explanation as to why these two are working
First, have a look at https://docs.spring.io/spring-data/jpa/docs/1.4.3.RELEASE/reference/htmlsingle/#d0e391 and understand how property traversal based on method name happens in Spring data JPA in order to generate the query and how ambiguity resolution is recommended.
In the first one, we tell spring data, it does not need to do property traversal to generate the JPA query as we are giving the query so it does not get any ambiguity.
In the second, as recommended in the reference, we are resolving the ambiguity for Spring Data JPA by telling it to go to Classroom object first. But as #crizzis pointed out under the question comment, Spring data should have treated it as ambiguity in the first place

Unable to initialize lazy-loaded relationship inside of `#Transactional` method

I have a set of simple models like this (getters and setters omitted for brevity):
#Entity
public class Customer {
#Id
private Integer id;
}
#Entity
public class Order {
#Id
private Integer id;
#ManyToOne(fetch = FetchType.LAZY)
#JoinColumn(name = "customer_id")
private Customer customer;
}
I am trying to load an Order using a Spring JPA repository with a findById method, including the customer.
First I tried this:
#Transactional
Optional<Order> findById(Integer id) {
return repository.findById(id);
}
But when I tried to access Customer I got a LazyInitializationException: could not initialize proxy - no Session. So after referring to some other questions, I updated my method to be a bit uglier, but to explicitly call Hibernate.initialize:
#Transactional
Optional<Order> findById(Integer id) {
return repository.findById(id)
.map( order -> {
Hibernate.initialize(order.getCustomer());
return order;
);
}
But I still get org.hibernate.LazyInitializationException: could not initialize proxy - no Session. repository is a regular CrudRepository which provides the findById method out-of-the-box.
How can I initialize this lazily loaded child entity? My understanding is that the #Transactional indicates that I should still be within the transaction for the entirety of this method call. The only thing further downstream is the repository itself, which is just an interface, so I'm not sure how else to go about forcing the load of this child entity.
The Order entity and everything else in it is retrieved properly from the database; it's only when I try to get the lazy-loaded child entities that we start having issues.
The only way I managed to get this working was to write a custom hql method in the Repository using a left join fetch. While that works, it clutters up my repository with a method that is pretty much a duplicate of another and which I'm pretty sure I'm not actually supposed to need (so I would rather not do it this way.)
Spring-Boot 2.1.4.RELEASE, Spring 5.1.6.RELEASE, Hibernate 5.3.7.Final.
You have to define the method as public. See "Method visibility and #Transactional" in the spring docs.
This should work:
#Transactional
public Optional<Order> findById(Integer id) {
Optional<Order> order = repository.findById(id);
order.ifPresent(o -> Hibernate.initialize(o.getCustomer()));
return order;
}

JPA/Hiberante don't generate join sql for FetchType.EAGER while Spring #Transactional annotated

I have a very wired problem.
JPA/Hiberante don't generate join sql for FetchType.EAGER while Spring #Transactional annotated. But if I remove the #Transactional . Everything is fine.
Here is the code:
public class Item {
#ManyToOne
private Order order;
}
public class Order {
#OneToMany(mappedBy = "item", fetch = FetchType.EAGER, cascade = CascadeType.ALL)
private List<Item> items;
}
#Test
#Transactional
public void testFetch() throws Exception {
Item randomItem = new Item();
Order randomOrder = new Order();
//OrderService and itemService is implemented by Spring Roo standard.
orderService.saveOrder(randomOrder);
randomItem.setOrder(randomOrder);
itemService.saveItem(randomItem);
Order OrderResult = orderService.findOrder(randomOrder.getId());
final List<Item> itemSearchResult = OrderResult.getItems();
Assert.assertNotNull(itemSearchResult);
}
The assertNotNull will fail if #Transactional on. But will success if #Transactional commented.
I debug more information. Just to find out when #Transactional on Hibernate will not generate join sql for
orderService.findOrder(randomOrder.getId());
Alos I try to switch to elicpseLink as JPA provider. Things become worse, when #Transactional commented, orderService.findOrder(randomOrder.getId()) will return a empty list(not null, size 0).
Any advice? Many Thanks!
I can't comment on the joins in Hibernate except that you should specify fetch join in your query to be portable to other JPA providers. EclipseLink in particular does not join eager relationships without JPA settings or native query hints or #JoinFetch annotations.
As for the collection being empty on EclipseLink. This is because you only setting one side of the relationship. JPA requires you to set both sides of bidirectional relationships so that they remain consistent with what is in the database. When #Transactional is commented out, you are getting back the same randomOrder instance that had an empty items collection when persisted.
Try calling randomOrder.addItems(randomItem); and randomItem.setOrder(randomOrder); before the orderService.saveOrder(randomOrder); call.

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