I downloaded the read-the-docs theme for sphinx from Github and put it into the _themes folder.
conf.py:
html_theme = "sphinx_rtd_theme"
html_theme_path = ["_themes", ]
However, running "make html" I get this error:
Sphinx v4.1.2 in Verwendung
Lade Übersetzungen [de]…erledigt
loading pickled environment... erledigt
WARNING: sphinx_rtd_theme (< 0.3.0) found. It will not be available since Sphinx-6.0
Theme error:
no theme named 'sphinx_rtd_theme' found (missing theme.conf?)
Somehow Sphinx seems to find the theme and then disregard it. Can someone tell me what is happening and how I can fix it?
Need to install:
pip install sphinx-rtd-theme
I solved it! (not the same as OP, since he did not have the package installed, but maybe it'll be useful for somebody)
If it doesn't work for you, be sure to use underscores in the conf.py file as the package uses normal dashes.
In conf.py it should be like this
html_theme = 'sphinx_rtd_theme'
not like this
html_theme = 'sphinx-rtd-theme'
https://pypi.org/project/sphinx-rtd-theme/
I solved it using the underscore point mentioned by Some Dev, but I also needed to update pip to the latest version:
python.exe -m pip install --upgrade pip
Related
After a fair bit of thrashing, I successfully installed the Python Camelot PDF table extraction tool (https://pypi.org/project/camelot-py/) and it works for the intended purpose. But in order to get it to work, aside from having to correct a deprecated dependency (by editing pyproject.toml and setting PyPDF2 =”2.12.1”) I used pip to install Camelot from within a Poetry (my preferred package manager) environment- because I haven’t yet figured out any other way.
Since I’m very new to Python and package management (but not to programming) I have some holes in my basic understanding that I need to patch up. I thought that using two package managers on the same project in principle defeats the purpose of using package managers, so I feel like I’m lucky that it works. Would love some input on what I’m missing.
The documentation for Camelot provides instructions for installing via pip and conda (https://camelot-py.readthedocs.io/en/master/user/install-deps.html), but not Poetry. As I understand (or misunderstand) it, packages are added to Poetry environments via the pyproject.toml file and then calling "poetry install."
I updated pyrpoject.toml as follows, having identified the current Camelot version as 0.10.1 (camelot --version):
[tool.poetry.dependencies]
python = "^3.8"
PyPDF2 = "2.12.1"
camelot = "^0.9.0"
This led to the error:
Because camelot3 depends on camelot (^0.9.0) which doesn't match any versions, version solving failed.
Same problem if I set (camelot = "0.10.1"). So I took the Camelot reference out of pyproject.toml, and ran the following command from within my Poetry virtual environment:
pip install “camelot-py[base]”
I was able to successfully proceed from here, but that doesn’t feel right. Is it wrong to try to force this project into Poetry, and should I instead consider using different package managers for different projects? Am I misunderstanding how Poetry works? What else am I missing here?
Whenever you see pip install 'Something[extra]' you can replace it with poetry add 'Something[extra]'.
Alternatively you can write it directly in the pyproject.toml and then run poetry install instead:
[tool.poetry.dependencies]
# ...
Something = { extras = ["extra"] }
Note that in your question you wrote camelot in the pyproject.toml but it is camelot-py that you should have written.
first time on stack overflow. Basically pip is installing packages and Jupyter notebook can't find them to import. I've searched other similar questions and found some tips, but none of them have worked in my particular instance. I've shown the information that was helpful in other posts so you can see what I' mworking with:
My Notebook
In similar questions they've asked what "jupyter kernelspec list" returns in the terminal, so I've inlcuded that here:
KernelSpec Results
I would include my kernel.json file as well, but I tried changing with it, and upon seeing no change, tried deleting it altogether and my notebook runs fine.
So I'm thoroughly confused, and could really use some help.
Thankyou
Make sure the packages you think you installed are really installed to the running environment.
E.g. from inside notebook run:
!pip list | grep package_name
If the package in question is installed, get details using [pip show][1]
!pip show pyyaml
Name: PyYAML
Version: 5.1
Summary: YAML parser and emitter for Python
Home-page: https://github.com/yaml/pyyaml
Author: Kirill Simonov
Author-email: xi#resolvent.net
License: MIT
Location: /home/ntg/anaconda3/lib/python3.7/site-packages
Requires:
Required-by: bokeh, anaconda-client
Remember that for some libraries the import is not the name of the module,e.g. to install pyyaml I did pip install pyyaml, but to import it I will need import yaml... When in doubt, google the specific module.
Keep in mind that pip deals with modules (think libraries such as pandas).
If you cannot find some of your code, make sure it is in the directory you think it is, if not in the same directory, make sure the other directory has a file named init.py to denote the dir is a module, and possibly check
Cannot import from __init__ in a subfolder
Just tried to rebuild a container with DRF and drf-yasg. The exact same commit was passing all tests fine but is now falling over with the following exception:
ImportError: Could not import 'rest_framework.schemas.coreapi.AutoSchema' for API setting 'DEFAULT_SCHEMA_CLASS'. ModuleNotFoundError: No module named 'rest_framework.schemas.coreapi'.
Nothing else has changed, but it seems a newer package may have been included that broke the Swagger generator.
Anyone else experience similar?
So it seems pip was pulling DRF V3.10, which has some switch from CoreAPI to OpenAPI: https://www.django-rest-framework.org/community/3.10-announcement/ . Adding the line from the release documentation:
REST_FRAMEWORK = {
...
'DEFAULT_SCHEMA_CLASS': 'rest_framework.schemas.coreapi.AutoSchema'
}
did not seem to make any difference.
I would presume your dependencies in requirements.txt are not specific enough, and rebuilding the container has installed a later version of djangorestframework.
Check for a line in your pipfile like djangorestframework>=3.9, and this should be changed to either pin a specific version djangorestframework==3.9, or pin it to a specific minor release so you will still receive bug fixes and security updates djangorestframework>=3.9,<3.10.
These lines can also be used directly with pip, incase your container build uses pip directly, e.g. pip install "djangorestframework>=3.9,<3.10"
It seems that installing coreapi seperately may help: pip install coreapi
pip3 install packaging
solve it!
I have installed Biopython by Anaconda on Windows.
When I try import Bio I get this error:
ModuleNotFoundError: No module named 'Bio'
Why?
Simone.. it looks like your installation did go wrong somehow. Regardless of why and how try the following stepwise approach to see if your import error remains.
On Windows (the dots denote your installed program path specifics):
e.g. go to: C:\....\Anaconda...\Lib\site-packages
find and remove folders using delete.
folder 1: "\Bio"
folder 2: "\biopython-1.70.dist-info"
The version value 1.70 might be 1.69 when using conda for installation.
Empty your trashbin. This way the system can't do tricks and recover or link to deleted files and folders.
Install pip if its not and grab it from here.
try pip install biopython --no-cache-dir
Voila! Hope it works now for you too... Enjoy!
In case its not check windows environment variables\path.. via control panel>advanced system settings to include PATH to site-packages. Or do similar on other OS.
I'm trying to add a module to my PYTHONPATH permanently, I know this could sound like a duplicated question, but I tried all the solution that i could find.
what I want to do is:
add PyLit module (https://github.com/gmilde/PyLit) to my PYTHONPATH permanently.
the instructions to install it are:
Install
As PyLit is a pure Python module, installation is straightforward: Put pylit.py in Python's Module Search Path.
I need this module to be added permanently. I tried:
adding it in my .bash_profile in my $PATH
creating in my .bash_profile a $PYTHONPATH new var
adding it to my: /Library/Python/2.7/site-packages
tried using Anaconda (and pip)
I'm a newbie with Python, but I have given a look at the module I want to add, and the structure seems weerd, usually I use a setup.py file but it is missing.
python setup.py install
I hope someone can help me out...
Thanks
I just solved my issue... There were conflicts between ma python versions. I basically removed python 2.7 and reinstalled it.
Then I tried again with the pip approach and, after rebooting my mac book pro, everything worked just fine.