What to do when Memgraph stops working without any info? - memgraphdb

Sometimes the Docker container where Memgraph is running just stops working or says that the process was aborted with exit code 137. How can I fix this?

You should check the Memgraph logs, where you'll probably find the reason why the process was aborted.
Since you said that you're using Memgraph with Docker, there are two options:
If you run Memgraph with Docker using the volume for logs, that is with
-v mg_log:/var/log/memgraph, then mg_log folder usually can be found at \\wsl$\docker-desktop-data\version-pack-data\community\docker\volumes\ (Windows) or /var/lib/docker/volumes/ (Linux and macOS).
If you run Memgraph without using the volume for logs, then you need to enter the Docker container. In order to do that, first you have to find out the container ID by running docker ps. Then you have to copy the container ID and run docker exec -it <containerID> bash. For example, if container ID is 83d76fe4df5a, then you run docker exec -it 83d76fe4df5a bash. Next, you need find the folder where logs are located. You can do that by running cd /var/log/memgraph. To read the logs, run cat <memgraph_date>.log, that is, if you have log file memgraph_2022-03-02.log located inside the log folder, then run cat memgraph_2022-03-02.log.
Hopefully, when you read the logs, you'll be able to fix your problem.

Related

Docker: "Cannot access '/var/lib/docker/containers': No such file or directory" error [duplicate]

I'm using Windows 10 with native docker installation.
I'm looking for the location where docker save the containers logs.
In Linux, the Docker containers log files are in this location:
/var/lib/docker/containers/container-id/container-id-json.log
But where can I find it in windows 10 ?
For Windows 10 + WSL 2 (Ubuntu 20.04), Docker version 20.10.2, build 2291f61
Lets DOCKER_ARTIFACTS == \\wsl$\docker-desktop-data\version-pack-data\community\docker
Container logs can be found in the following location
DOCKER_ARTIFACTS\containers\[Your_container_ID]\[Your_container_ID]-json.log
Here is an example :
Check first if those logs are in (as suggested here):
C:\ProgramData\docker\containers\[container_ID]\[container_ID]-json.log
The Docker C:\ProgramData\docker is the Root Dir reported by docker info.
Regarding Docker Linux through Hyper-v, check if "How to Delete Docker Container Log Files (Windows or Linux) " can help (from Jon Gallant):
Run docker inspect to find your Docker log file location
Find the “Docker Root Dir” Value, mine is /var/lib/docker
Your docker log file path should be /var/lib/docker, but if it isn’t, then change it in the command below.
find /var/lib/docker/containers/ -type f -name "*.log"
The command you see in this image is based on "How to SSH into the Docker VM (MobyLinuxVM) on Windows"
We aren’t technically going to SSH into the VM, we’ll create a container that has full root access and then access the file system from there.
Get container with access to Docker Daemon
Run container with full root access
Switch to host file system
Open a Command prompt and execute the following:
docker run --privileged -it -v /var/run/docker.sock:/var/run/docker.sock jongallant/ubuntu-docker-client
docker run --net=host --ipc=host --uts=host --pid=host -it --security-opt=seccomp=unconfined --privileged --rm -v /:/host alpine /bin/sh
chroot /host
Execute the find command there, and you should find the logs.
For Windows 10 + Docker Desktop version 3.6.0, the virtual path for logs and data (artifacts) is \\wsl$\docker-desktop-data\version-pack-data\community\docker (you can copy/paste it in Explorer navigation bar).
The logs are at \\wsl$\docker-desktop-data\version-pack-data\community\docker\containers\[containerID]\[containerID]-json.logs
and the data is under \\wsl$\docker-desktop-data\version-pack-data\community\docker\volumes\[volumeID]\_data
How to get containerID:
You can find container ID (truncated) by running docker ps in a command prompt. You can also find it by clicking the CLI button on DockerDesktop next to the container name, the id will be in the title of the cmd window that will pop up.
Once you have the id, you can navigate to containers\[containerID] under the artifacts directory (\\wsl$\docker-... above). The log file will have the .log extension and its name will have the containerID in it. Keep in mind that it will be an enriched json format though, so not easily readable.
How to get volumeID:
To find a container's data (for example kafka broker topics), you need to find the id of the volumes where the data is stored. For that you will need to click on the container in DockerDesktop, then click INSPECT (top right). You can then scroll down to find Mounts configuration entries. Each mount will have a volumeID (different from containerID), and that volumeID will be part of a path similar to this one /var/lib/docker/volumes/71f7a5992c58fdcf229c3848acb014712f34fab380bc7c712cf5a0a632fe9110/_data. volumeID here being 71f7a5992c58fdcf229c3848acb014712f34fab380bc7c712cf5a0a632fe9110.
You can then take volumeID and navigate to volumes\[volumeID] under the artifacts directory (\\wsl$\docker-... above) where the data will be located.
For me, using Docker Desktop for Windows on version 4.9.1 (81317), Windows 10 21H2, WSL 2 mode, the containers' folders were at
\\wsl$\docker-desktop-data\data\docker\containers
Slightly different from the others.
For Windows Users who wants to delete all Docker log files on WSL 2.
The path to the docker container is correct thx to #craftsmannadeem
\\wsl$\docker-desktop-data\version-pack-data\community\docker\containers
Here a command to execute on Windows to delete all log files:
del /s \\wsl$\docker-desktop-data\version-pack-data\community\docker\containers\*-json.log
Bye bye Docker logs:
File was deleted - \\wsl$\docker-desktop-data\version-pack-data\community\docker\containers\2012efd0ccfb8aed6291dd9a3b7b5aef507b6af4fce5b85e9306f45980db9531\2012efd0ccfb8aed6291dd9a3b7b5aef507b6af4fce5b85e9306f45980db9531-json.log
File was deleted - \\wsl$\docker-desktop-data\version-pack-data\community\docker\containers\9e627f1fe8f3c3ab85c64f85f93942d1f077e9a6e2896b51df782b0c0c3777d1\9e627f1fe8f3c3ab85c64f85f93942d1f077e9a6e2896b51df782b0c0c3777d1-json.log
File was deleted - \\wsl$\docker-desktop-data\version-pack-data\community\docker\containers\6ea8f3cb354c199bc719701f8f1e75c333f81cd2f03dca0c7a626cbcbf9ed5a0\6ea8f3cb354c199bc719701f8f1e75c333f81cd2f03dca0c7a626cbcbf9ed5a0-json.log
...
For window system logs are located at C:\ProgramData\Docker\containers or %APPDATA%\Docker
For Linux system logs are located at /var/lib/docker/containers
I couldn't find where the logs were stored locally. (Good chance they aren't plain text any more. However, if you just need the output of the logs, you can run a command like this:
docker logs --details [container-name] > container-name.log
This will grab the logs for the container and write them to a log file in the current directory.
Note: The --details adds additional info to the logs like environment variables and the like, but is not required for the command to work.
If you use docker-compose with windows+wsl, In my case the log monitoring agent (also running as a container in docker) was not able to find the log files eventhough the path for logs was mounted as volume.
volumes:
- /var/run/docker.sock:/var/run/docker.sock
-/var/lib/docker:/var/lib/docker
The log monitoring agent could not find logs in
/var/lib/docker/containers/**/*.log
The problem in my case was, I was running docker-compose up command for the log monitoring agent from within wsl shell. When I ran it from windows powershell or cmd, the agent was able to find the logs in mounted path.

how to troubleshoot dockerfile when application crash/fail in the container?

If the application fails in the docker container you would not be able to troubleshoot what happened. Please propose a solution to that
docker ps -a
This will list all the containers including those who have already existed (for whatever reason)
Then you can copy the process id of the container of your interest and:
docker logs <pid of container that has failed>
Another interesting command is:
docker inspect <pid of container that has failed>
It returns a big json - you can check some sections there, like memory settings, "State" (if the process was OOM killed and so forth)

docker deamon is not work in windows

I try to run docker in bash ubuntu on windows. But every time I get this message
"Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?". If i run it in powershell - it work. Can somebody help?
Connecting to the docker deamon requires some privilidges that you don't have when starting the bash terminal.
You can however use the docker command terminal which will allow you to interact with the docker deamon.
Found the solution on this post: https://blog.jayway.com/2017/04/19/running-docker-on-bash-on-windows/
Connect Docker on WSL to Docker on Windows
Running docker against an engine on a different machine is actually quite easy, as Docker can expose a TCP endpoint which the CLI can attach to.
This TCP endpoint is turned off by default; to activate it, right-click the Docker icon in your taskbar and choose Settings, and tick the box next to “Expose daemon on tcp://localhost:2375 without TLS”.
With that done, all we need to do is instruct the CLI under Bash to connect to the engine running under Windows instead of to the non-existing engine running under Bash, like this:
$ docker -H tcp://0.0.0.0:2375 images
REPOSITORY TAG IMAGE ID CREATED SIZE
There are two ways to make this permanent – either add an alias for the above command, or better yet, export an environment variable which instructs Docker where to find the host engine:
$ echo "export DOCKER_HOST='tcp://0.0.0.0:2375'" >> ~/.bashrc
$ source ~/.bashrc
Now, running docker commands from Bash works just like they’re supposed to.
$ docker run hello-world
Hello from Docker!This message shows that your installation appears to be working correctly.

Running an docker image with cron

I am using an image from docker hub and it uses cron to perform some actions after some interval. I have registered and pushed it as described in documentation as a worker process (not a web). It also requires several environment variables.
I've run it from command line, e.g. docker run -t -e E_VAR1=VAL1 registry.heroku.com/image_name/worker and it worked for few days, then suddenly stopped and I had to run the command again.
Questions:
Is this a correct way to run a docker (as worker process) in Heroku?
Why might it stop running after few days? Is there any logs to check?
Is there a way to restart the process automatically?
How properly set environment variables for the docker in Heroku?
Thanks!
If you want to have this run in the background, you should use the -d flag to disconnect stdin and stdout, and not -t.
To check logs, user docker logs [container name or id]. You can find out the container's name and id using docker ps -a. That should give you an idea as to why the container stopped.
To have the container restart automatically add the --restart always flag when you run it. Alternatively, use --restart on-failure to only restart when it exited with a nonzero exit code.
The way you set environment variables seems fine.

How do I run the Hetionet v1.0 docker container?

I'm trying to run the Hetionet v1.0 docker container mentioned in this SO post.
I've setup a digitalocean droplet with Docker
I ran docker pull dhimmel/hetionet and it worked
Now I run docker run dhimmel/hetionet and the following happens (and never returns to the interactive shell prompt).
If that completed successfully I think the last thing I'm supposed to do is run sh ~/run-docker.sh. Furthermore nothing is live at my droplet's ip_address:7474.
The error in the screenshot above looks a lot like it could be related to some redundant #Path("/") annotation, as described in this SO post's comment, buried in the docker container but I'm not sure.
Is the output from running docker run dhimmel/hetionet supposed to hang my shell? I'm running a 2 GB Memory / 40 GB Disk Droplet on Ubuntu 16.04 with Docker 1.12.5.
Thanks for your interest in the Hetionet Docker.
The output in 3 is expected. It looks like a Docker container successfully launched, downloaded the Hetionet database, and launched the Neo4j server. I'll look into fixing the warnings, but they're not errors, as Neo4j is still launching.
For production, we use a more advanced Docker run command. Depending on your use case, you may want to use the development docker run command:
docker run \
--publish=7474:7474 \
--publish=7687:7687 \
--volume=$HOME/neo4j/hetionet-data:/data \
--volume=$HOME/neo4j/hetionet-logs:/var/lib/neo4j/logs \
dhimmel/hetionet
Both the production and development command map ports. This will make it so the Neo4j server running inside your Docker container is available at http://localhost:7474/. This is most likely what you want. If you're doing this on DigitalOcean, you would replace http://localhost with the IP address of your droplet.
For an interactive shell session in a dhimmel/hetionet container, you can use:
docker run --interactive --tty dhimmel/hetionet bash
However, that command does not launch the Neo4j server -- it just let's you explore the image.
Does this clear things up?

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