pandoc to make each directory a chapter - pandoc

Question

I have a lot of markdown files in various directories each with the same format (# title, then ## sub-title).
can I make the --toc respect the folder layout, in that the folder itself is the name of chapter, and each markdown file is content of this chapter.
so far pandoc totally ignores my folder names, it works the same as putting all the markdown files within the same folder.

Answer 1

My approach to this is to create index files in each folder with first level heading and downgrade headings in other files by one level.
I use Git and by default I'm using default structure, having first level headings in files, but when I want to generate ebook using pandoc I'm modifying files via automated Linux shell script. After that, I revert changed files via Git.
Here's the script:
find ./docs/*/ -name "*.md" ! -name "*index.md" -exec perl -pi -e "s/^(#)+\s/#$&/g" {} \;
./docs/*/ means I'm looking only for files inside subfolders of docs directory like docs/foo/file1.md, docs/bar/file2.md.
I'm also interested only in *.md files, excluding *index.md files.
In index.md files (that I name usually 00-index.md to make them appear as first), I put a first level heading # and because those files are excluded from find portion of the script, their headings aren't downgraded.
Next, there's a perl's search and replace command with regular expression s/^(#)+\s/#$&/g that looks for all lines starting from one or more # and adds another # to them.
In the end, I'm running pandoc with --toc-depth=2 so the table of content contains only first and second level headings.
pandoc ./docs/**/*.md --verbose --fail-if-warnings --toc-depth=2 --table-of-contents -o ./ebook.epub
To revert all changes made to files, I restore changes in the Git repo.
git restore .