I tried to compile the libxsmm library on my Macbook air m1 (arm64) using the following commands:
git clone --branch 1.17 https://github.com/hfp/libxsmm
cd libxsmm
make generator
cp bin/libxsmm_gemm_generator $HOME/bin
cd ..
However, I got an error that an Intel Architecture or compatible CPU required:
(base) yonatan#Yonatans-MacBook-Air libxsmm % make generator
cc -DNDEBUG -D__STATIC=1 -DLIBXSMM_BUILD=1 -Iinclude -I./src -fPIC -Wno-pass-failed -Wall -O2 -pthread -c ./src/libxsmm_generator_gemm_driver.c -o obj/intel64/libxsmm_generator_gemm_driver.o
In file included from ./src/libxsmm_generator_gemm_driver.c:11:
In file included from include/libxsmm.h:44:
In file included from include/libxsmm_dnn_convolution.h:14:
In file included from include/libxsmm_dnn.h:14:
In file included from include/libxsmm_typedefs.h:14:
include/libxsmm_macros.h:61:5: error: Intel Architecture or compatible CPU required!
# error Intel Architecture or compatible CPU required!
^
1 error generated.
make: [obj/intel64/libxsmm_generator_gemm_driver.o] Error 1 (ignored)
--------------------------------------------------------------
In case of assembler error, perhaps GNU Binutils are outdated.
See https://github.com/hfp/libxsmm#outdated-binutils
--------------------------------------------------------------
make: *** [obj/intel64/libxsmm_generator_gemm_driver.o] Error 1
(base) yonatan#Yonatans-MacBook-Air libxsmm %
Is there any way to compile or install the libxsmm library on my Mac? I need this library to set up the SeiSol platform (see: documentation https://seissol.readthedocs.io/en/latest/compilation.html) for my studies.
Let me know if any further details are needed. Thanks!
Related
I am following a tutorial on how to make an operating system for the raspberry pi. I want to follow this tutorial on a Raspberry Pi running Raspbian.
When I try to assemble some assembly using arm-none-eabi-gcc (arm-none-eabi-gcc -mcpu=cortex-a7 -fpic -ffreestanding -c boot/boot.S -o boot/boot.o), I get this:
/usr/lib/gcc/arm-none-eabi/8.3.1/cc1: error while loading shared libraries: /lib/aarch64-linux-gnu/libisl.so.23: unexpected PLT reloc type 0x00
make: *** [Makefile:2: all] Error 1
I don't know why this happens, because I installed the arm-none-eabi-gcc package...
How can I fix this?
I'm trying to install a library on osx 10.11 but when I use cmake, it prints the output below. This has worked in the past (as in it worked yesterday), but something seems to have gone wrong since then. I've looked for an answer but can't seem to find anything that works. My Xcode and Xcode command line tools are all up to date. My cmake is up to date. I tried uninstalling and reinstalling it to no avail. I've tested the c compiler and it's working as it should as far as I can tell. My openssl is also up to date, I tried reinstalling that as well without success. My Clang version is 7.0.0 (clang-700.0.72). It's probably something obvious that I'm missing. Any ideas would be greatly appreciated.
$ pwd
<*current directory*>
$ mkdir build
$ cd build
$ cmake ..
-- The C compiler identification is AppleClang 7.0.0.7000072
-- The CXX compiler identification is AppleClang 7.0.0.7000072
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -- broken
CMake Error at /usr/local/Cellar/cmake/3.3.2/share/cmake/Modules/CMakeTestCCompiler.cmake:61 (message):
The C compiler
"/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang"
is not able to compile a simple test program.
It fails with the following output:
Change Dir: <*current directory*>/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_e9215/fast"
/Applications/Xcode.app/Contents/Developer/usr/bin/make -f
CMakeFiles/cmTC_e9215.dir/build.make CMakeFiles/cmTC_e9215.dir/build
Building C object CMakeFiles/cmTC_e9215.dir/testCCompiler.c.o
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
-o CMakeFiles/cmTC_e9215.dir/testCCompiler.c.o -c
<*current directory*>/build/CMakeFiles/CMakeTmp/testCCompiler.c
Linking C executable cmTC_e9215
/usr/local/Cellar/cmake/3.3.2/bin/cmake -E cmake_link_script
CMakeFiles/cmTC_e9215.dir/link.txt --verbose=1
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
-Wl,-search_paths_first -Wl,-headerpad_max_install_names
/usr/local/opt/openssl/lib CMakeFiles/cmTC_e9215.dir/testCCompiler.c.o -o
cmTC_e9215
ld: can't map file, errno=22 file '/usr/local/opt/openssl/lib' for
architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see
invocation)
make[1]: *** [cmTC_e9215] Error 1
make: *** [cmTC_e9215/fast] Error 2
CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
CMakeLists.txt:9 (project)
-- Configuring incomplete, errors occurred!
See also "<*current directory*>/build/CMakeFiles/CMakeOutput.log".
See also "<*current directory*>/build/CMakeFiles/CMakeError.log".
This is the output of <current directory>/build/CMakeFiles/CMakeOutput.log:
The system is: Darwin - 15.0.0 - x86_64
Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded.
Compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
Build flags:
Id flags:
The output was:
0
Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.out"
The C compiler identification is AppleClang, found in "<*current directory*>/build/CMakeFiles/3.3.2/CompilerIdC/a.out"
Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded.
Compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
Build flags:
Id flags:
The output was:
0
Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.out"
The CXX compiler identification is AppleClang, found in "<*current directory*>/build/CMakeFiles/3.3.2/CompilerIdCXX/a.out"
And this is the output of <current directory>/build/CMakeFiles/CMakeError.log:
Determining if the C compiler works failed with the following output:
Change Dir: <*current directory*>/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/make" "cmTC_e9215/fast"
/Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_e9215.dir/build.make CMakeFiles/cmTC_e9215.dir/build
Building C object CMakeFiles/cmTC_e9215.dir/testCCompiler.c.o
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -o CMakeFiles/cmTC_e9215.dir/testCCompiler.c.o -c <*current directory*>/build/CMakeFiles/CMakeTmp/testCCompiler.c
Linking C executable cmTC_e9215
/usr/local/Cellar/cmake/3.3.2/bin/cmake -E cmake_link_script CMakeFiles/cmTC_e9215.dir/link.txt --verbose=1
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -Wl,-search_paths_first -Wl,-headerpad_max_install_names /usr/local/opt/openssl/lib CMakeFiles/cmTC_e9215.dir/testCCompiler.c.o -o cmTC_e9215
ld: can't map file, errno=22 file '/usr/local/opt/openssl/lib' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[1]: *** [cmTC_e9215] Error 1
make: *** [cmTC_e9215/fast] Error 2
EDIT:
Simple restart seemed to fix it. The obvious answer that I should have tried first. Sorry for wasting your time
The error is ld: can't map file, errno=22 file '/usr/local/opt/openssl/lib' for architecture x86_64. Looks to me like that is a directory, not a file. You can run the cmake command on the line above and try adding -L in front.
It turns out it was the obvious solution. Off and on again. There's now a different error but one I think I can fix. Sorry for wasting everyone's time
I am trying to compile a Python PCL module which builds some C++ source. I am getting this error:
$ python setup.py install
running install
running build
running build_py
running build_ext
skipping 'pcl/_pcl.cpp' Cython extension (up-to-date)
building 'pcl._pcl' extension
/usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -g -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Library/Python/2.7/site-packages/numpy/core/include -I/usr/local/Cellar/pcl/HEAD/include/pcl-1.8 -I/usr/local/Cellar/eigen/3.2.3/include/eigen3 -I/usr/local/Cellar/pcl/HEAD/include/pcl-1.8 -I/usr/local/Cellar/flann/1.8.4/include -I/usr/local/Cellar/pcl/HEAD/include/pcl-1.8 -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c pcl/_pcl.cpp -o build/temp.macosx-10.6-intel-2.7/pcl/_pcl.o
pcl/_pcl.cpp:244:10: fatal error: 'boost/smart_ptr/shared_ptr.hpp' file not
found
#include "boost/smart_ptr/shared_ptr.hpp"
^
1 error generated.
error: command '/usr/bin/clang'
For whatever reason clang isn't looking in /usr/local/include where it most definitely would find the boost headers. As you can see it is linking all the other dependencies fine. What can I add that so clang will find boost?
On OSX 10.10, nothing fancy happening anywhere. Boost was probably installed by homebrew, but the files are all in /usr/local/include/boost as I'd expect.
Check the output of /usr/bin/clang++ -v some_test_file.cpp but chances are /usr/local/include isn't in the standard search path of the compiler.
You'll need to add -I/usr/local/include to CXXFLAGS or CPPFLAGS or whatever appropriate place in your build script or environment. It seems the python build script is failing to properly detect Boost.
If the above is not true (and /usr/local/include does show up in the output), make sure /usr/local/include/boost/smart_ptr/shared_ptr.hpp exists.
This is a follow-up to the question at Element-Wise Matrix Multiplication in Rcpp
I have been getting a number of different kinds of errors with RcppArmadillo since upgrading to Mavericks. I have Xcode 5.0.2 and Command Line Tools installed. Also, gfortran from Homebrew. But I keep encountering the error below --
> cppFunction("arma::mat schur(arma::mat& a, arma::mat& b)
{ return(a % b); }", depends="RcppArmadillo")
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [sourceCpp_18474.so] Error 1
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include - I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include" -fPIC "-mtune=native -g -O2 -Wall -pedantic -Wconversion" -c fileaf992bfb8f84.cpp -o fileaf992bfb8f84.o clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o sourceCpp_18474.so fileaf992bfb8f84.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -lgfortran /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/lib/libRcpp.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
Error in sourceCpp(code = code, env = env, rebuild = rebuild, showOutput = showOutput, :
Error 1 occurred building shared library.
WARNING: The tools required to build C++ code for R were not found.
Please install Command Line Tools for XCode (or equivalent).
# Contents of Makevars
$ cat ~/.R/Makevars
CC=clang
CXX=clang++
CXXFLAGS="-mtune=native -g -O2 -Wall -pedantic -Wconversion"
FLIBS=-lgfortran
Commenting FLIBS=-lgfortran does not help and results in even more error messages --
> cppFunction("arma::mat schur(arma::mat& a, arma::mat& b) { return(a % b); }", depends="RcppArmadillo")
ld: warning: directory not found for option '-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64'
ld: warning: directory not found for option '-L/usr/local/lib/x86_64'
ld: warning: directory not found for option '-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3'
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [sourceCpp_50381.so] Error 1
Thanks in advance.
Update
Following suggestions from response from Kevin and Dirk below, I re-installed Rcpp, RcppArmadillo and inline from source and updated FLIBS to point to the actual directory. This solved the issue.
# Update FLIBS in ~/.R/Makevars
FLIBS=-L/usr/local/Cellar/gfortran/4.8.2/gfortran
#Re-Install from source
install.packages(c("Rcpp","RcppArmadillo","inline"),type="source")
#Restart R
EDIT: If you're a Homebrew user, you now instead need to use brew install gcc (gfortran is no longer provided separate of gcc), and you can then follow the instructions here to get set up.
You have to symlink the libraries to /usr/local/lib manually:
ln -s /usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libgfortran.* /usr/local/lib/
I thought brew link gfortran would handle this, but apparently it only symlinks the gfortran program and not the actual libraries. So, unfortunately, you have to do it yourself.
(Replace 4.8.2 with whichever version of gfortran you're using from homebrew.)
Alternatively, if you want to keep from modifying /usr/local/lib, you can use
FLIBS=-L/usr/local/Cellar/gfortran/4.8.2/gfortran
in your ~/.R/Makevars file instead, so R knows where to find the gfortran libraries.
I can only suggest you study the numerous threads on the r-sig-mac list, the different answers here on SO as well as the posts on the rcpp-devel list.
As your error comes from the failed Fortran linking, maybe also review the standard page by Simon U. as well as the tools page it points too. AFAIK you should use the (older) gfortran 4.2.* from that page with R -- but then I am not an OS X user.
Edit in late 2016: We now have more detailed instructions in section 2.16 of the Rcpp FAQ.
I'm trying to install the Haskell regex-pcre library using:
cabal install --extra-include-dirs=/usr/local/include \
--extra-include-dirs=/usr/include regex-pcre
However I get this weird error:
Resolving dependencies...
Configuring regex-pcre-0.94.2...
Preprocessing library regex-pcre-0.94.2...
In file included from /Library/Frameworks/GHC.framework/Versions/7.0.2-i386/usr/lib/ghc-7.0.2/include/HsFFI.h:68,
from /Library/Frameworks/GHC.framework/Versions/7.0.2-i386/usr/lib/ghc-7.0.2/template-hsc.h:4,
from dist/build/Text/Regex/PCRE/Wrap_hsc_make.c:1:
/usr/include/float.h:8:24: error: float.h: No such file or directory
In file included from /Library/Frameworks/GHC.framework/Versions/7.0.2-i386/usr/lib/ghc-7.0.2/template-hsc.h:9,
from dist/build/Text/Regex/PCRE/Wrap_hsc_make.c:1:
/usr/include/stdarg.h:4:25: error: stdarg.h: No such file or directory
compiling dist/build/Text/Regex/PCRE/Wrap_hsc_make.c failed (exit code 1)
command was: /usr/bin/gcc -c dist/build/Text/Regex/PCRE/Wrap_hsc_make.c -o dist/build/Text/Regex/PCRE/Wrap_hsc_make.o -march=i686 -m32 -isysroot /Developer/SDKs/MacOSX10.5.sdk -mmacosx-version-min=10.5 -fno-stack-protector -march=i686 -m32 -isysroot /Developer/SDKs/MacOSX10.5.sdk -mmacosx-version-min=10.5 -fno-stack-protector -march=i686 -m32 -isysroot /Developer/SDKs/MacOSX10.5.sdk -mmacosx-version-min=10.5 -D__GLASGOW_HASKELL__=700 -Ddarwin_BUILD_OS -Ddarwin_HOST_OS -Di386_BUILD_ARCH -Di386_HOST_ARCH -I/usr/include -I/usr/local/include -DHAVE_PCRE_H -DSPLIT_BASE=1 -I/Library/Frameworks/GHC.framework/Versions/7.0.2-i386/usr/lib/ghc-7.0.2/bytestring-0.9.1.10/include -I/Library/Frameworks/GHC.framework/Versions/7.0.2-i386/usr/lib/ghc-7.0.2/base-4.3.1.0/include -I/Library/Frameworks/GHC.framework/Versions/7.0.2-i386/usr/lib/ghc-7.0.2/include -I/Library/Frameworks/GHC.framework/Versions/7.0.2-i386/usr/lib/ghc-7.0.2/include -I/Library/Frameworks/GHC.framework/Versions/7.0.2-i386/usr/lib/ghc-7.0.2/include/
cabal: Error: some packages failed to install:
regex-pcre-0.94.2 failed during the building phase. The exception was:
ExitFailure 1
The gist of it, seems to be that it can't find a second float.h file:
/usr/include/float.h:8:24: error: float.h: No such file or directory
I've opened /usr/include/float.h and line 8 reads:
#include_next <float.h>
I've done my searching on Google, and although I don't know that much C I think I understand what that line is supposed to say, but... I don't know how to really solve this problem. I don't know where else I have a float.h file on my system.
The GHC and GCC versions I'm using. GCC comes from XCode 4. GHC is 32bit, but I've tried the 64bit version too, with the same results.
$ gcc --version
i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5666) (dot 3)
$ ghc --version
The Glorious Glasgow Haskell Compilation System, version 7.0.2
OS X version is 10.6.7.
Any help greatly appreciated.
Looks to me like ticket #5011 - XCode 4 on Mac + GHC 7.0.2 fails to link.
This is fixed in GHC 7.0.3 which will be part of the mid-April release of the Haskell Platform.
And alternative fix is to downgrade to the 2010.2 Haskell Platform.
See this question yesterday: Can't install OpenGLRaw-1.1.0.1 on OS X