Fastest way to "sort" bit sequence by toggling bits - algorithm

Given a finite random sequence of bits, how can the minimum number of bit toggles necessary to result in a sorted sequence (i.e. any and all 0's are before any and all 1's) be determined?
Note, homogeneous sequences (e.g. 0000000 and 1111111) are considered sorted by this definition.
Also, this is not technically "sorting" the sequence because elements are toggled in-place, not restricted to swapping with other elements, is there better word to describe this activity than "sorting"?

Let Z(n) be the cost of setting the first n bits all 0.
Let X(n) be the cost of minimum cost of "sorting" the first n bits.
We have:
Z(0) = 0, X(0) = 0
if the ith bit is 0: Z(i) = Z(i-1), X(i) = min( Z(i-1), X(i-1)+1 )
if the ith bit is 1: Z(i) = Z(i-1)+1, X(i) = X(i-1)
The answer is X(n).
It's even easier in code:
z=0
x=0
for bit in sequence:
if bit == 0:
x = min(z,x+1)
else:
z = z+1
return x

One canonical dynamic program would be to evaluate in O(1) time and space two states for each bit: the cost of keeping the bit the same or toggling it, while assigning it as rightmost of the relevant section (also incurring the relevant cost for the implied toggles due to the assignment).
Sorry, the above applies to the general problem - where "sorted" could be in either direction. (To choose a direction, pick the relevant one from the best variable assignments below.)
Python code:
def f(bits):
set_bits = sum(bits)
left_ones = 0
best = len(bits)
for i, bit in enumerate(bits):
right_ones = set_bits - left_ones - bit
left_zeros = i - left_ones
right_zeros = len(bits) - i - 1 - right_ones
# As rightmost 0
best = min(best, bit + left_ones + right_zeros)
# As rightmost 1
best = min(best, (bit ^ 1) + left_zeros + right_ones)
left_ones += bit
return best
Output:
bit_sets = [
[1,0,0,1,1], # 1
[1,0,0,1,0,1], # 2
[0,1,1,0,1,0], # 2
[1,1,1,1], # 0
[0,0,1,1], # 0
[0,1,0,0,0], # 1
[1,0,1,1,1] # 1
]
for bits in bit_sets:
print(f(bits), bits)

Related

Product of consecutive numbers f(n) = n(n-1)(n-2)(n-3)(n- ...) find the value of n

Is there a way to find programmatically the consecutive natural numbers?
On the Internet I found some examples using either factorization or polynomial solving.
Example 1
For n(n−1)(n−2)(n−3) = 840
n = 7, -4, (3+i√111)/2, (3-i√111)/2
Example 2
For n(n−1)(n−2)(n−3) = 1680
n = 8, −5, (3+i√159)/2, (3-i√159)/2
Both of those examples give 4 results (because both are 4th degree equations), but for my use case I'm only interested in the natural value. Also the solution should work for any sequences size of consecutive numbers, in other words, n(n−1)(n−2)(n−3)(n−4)...
The solution can be an algorithm or come from any open math library. The parameters passed to the algorithm will be the product and the degree (sequences size), like for those two examples the product is 840 or 1640 and the degree is 4 for both.
Thank you
If you're interested only in natural "n" solution then this reasoning may help:
Let's say n(n-1)(n-2)(n-3)...(n-k) = A
The solution n=sthen verifies:
remainder of A/s = 0
remainder of A/(s-1) = 0
remainder of A/(s-2) = 0
and so on
Now, we see that s is in the order of t= A^(1/k) : A is similar to s*s*s*s*s... k times. So we can start with v= (t-k) and finish at v= t+1. The solution will be between these two values.
So the algo may be, roughly:
s= 0
t= (int) (A^(1/k)) //this truncation by leave out t= v+1. Fix it in the loop
theLoop:
for (v= t-k to v= t+1, step= +1)
{ i=0
while ( i <= k )
{ if (A % (v - k + i) > 0 ) // % operator to find the reminder
continue at theLoop
i= i+1
}
// All are valid divisors, solution found
s = v
break
}
if (s==0)
not natural solution
Assuming that:
n is an integer, and
n > 0, and
k < n
Then approximately:
n = FLOOR( (product ** (1/(k+1)) + (k+1)/2 )
The only cases I have found where this isn't exactly right is when k is very close to n. You can of course check it by back-calculating the product and see if it matches. If not, it almost certainly is only 1 or 2 in higher than this estimate, so just keep incrementing n until the product matches. (I can write this up in pseudocode if you need it)

Number of Paths in a Triangle

I recently encountered a much more difficult variation of this problem, but realized I couldn't generate a solution for this very simple case. I searched Stack Overflow but couldn't find a resource that previously answered this.
You are given a triangle ABC, and you must compute the number of paths of certain length that start at and end at 'A'. Say our function f(3) is called, it must return the number of paths of length 3 that start and end at A: 2 (ABA,ACA).
I'm having trouble formulating an elegant solution. Right now, I've written a solution that generates all possible paths, but for larger lengths, the program is just too slow. I know there must be a nice dynamic programming solution that reuses sequences that we've previously computed but I can't quite figure it out. All help greatly appreciated.
My dumb code:
def paths(n,sequence):
t = ['A','B','C']
if len(sequence) < n:
for node in set(t) - set(sequence[-1]):
paths(n,sequence+node)
else:
if sequence[0] == 'A' and sequence[-1] == 'A':
print sequence
Let PA(n) be the number of paths from A back to A in exactly n steps.
Let P!A(n) be the number of paths from B (or C) to A in exactly n steps.
Then:
PA(1) = 1
PA(n) = 2 * P!A(n - 1)
P!A(1) = 0
P!A(2) = 1
P!A(n) = P!A(n - 1) + PA(n - 1)
= P!A(n - 1) + 2 * P!A(n - 2) (for n > 2) (substituting for PA(n-1))
We can solve the difference equations for P!A analytically, as we do for Fibonacci, by noting that (-1)^n and 2^n are both solutions of the difference equation, and then finding coefficients a, b such that P!A(n) = a*2^n + b*(-1)^n.
We end up with the equation P!A(n) = 2^n/6 + (-1)^n/3, and PA(n) being 2^(n-1)/3 - 2(-1)^n/3.
This gives us code:
def PA(n):
return (pow(2, n-1) + 2*pow(-1, n-1)) / 3
for n in xrange(1, 30):
print n, PA(n)
Which gives output:
1 1
2 0
3 2
4 2
5 6
6 10
7 22
8 42
9 86
10 170
11 342
12 682
13 1366
14 2730
15 5462
16 10922
17 21846
18 43690
19 87382
20 174762
21 349526
22 699050
23 1398102
24 2796202
25 5592406
26 11184810
27 22369622
28 44739242
29 89478486
The trick is not to try to generate all possible sequences. The number of them increases exponentially so the memory required would be too great.
Instead, let f(n) be the number of sequences of length n beginning and ending A, and let g(n) be the number of sequences of length n beginning with A but ending with B. To get things started, clearly f(1) = 1 and g(1) = 0. For n > 1 we have f(n) = 2g(n - 1), because the penultimate letter will be B or C and there are equal numbers of each. We also have g(n) = f(n - 1) + g(n - 1) because if a sequence ends begins A and ends B the penultimate letter is either A or C.
These rules allows you to compute the numbers really quickly using memoization.
My method is like this:
Define DP(l, end) = # of paths end at end and having length l
Then DP(l,'A') = DP(l-1, 'B') + DP(l-1,'C'), similar for DP(l,'B') and DP(l,'C')
Then for base case i.e. l = 1 I check if the end is not 'A', then I return 0, otherwise return 1, so that all bigger states only counts those starts at 'A'
Answer is simply calling DP(n, 'A') where n is the length
Below is a sample code in C++, you can call it with 3 which gives you 2 as answer; call it with 5 which gives you 6 as answer:
ABCBA, ACBCA, ABABA, ACACA, ABACA, ACABA
#include <bits/stdc++.h>
using namespace std;
int dp[500][500], n;
int DP(int l, int end){
if(l<=0) return 0;
if(l==1){
if(end != 'A') return 0;
return 1;
}
if(dp[l][end] != -1) return dp[l][end];
if(end == 'A') return dp[l][end] = DP(l-1, 'B') + DP(l-1, 'C');
else if(end == 'B') return dp[l][end] = DP(l-1, 'A') + DP(l-1, 'C');
else return dp[l][end] = DP(l-1, 'A') + DP(l-1, 'B');
}
int main() {
memset(dp,-1,sizeof(dp));
scanf("%d", &n);
printf("%d\n", DP(n, 'A'));
return 0;
}
EDITED
To answer OP's comment below:
Firstly, DP(dynamic programming) is always about state.
Remember here our state is DP(l,end), represents the # of paths having length l and ends at end. So to implement states using programming, we usually use array, so DP[500][500] is nothing special but the space to store the states DP(l,end) for all possible l and end (That's why I said if you need a bigger length, change the size of array)
But then you may ask, I understand the first dimension which is for l, 500 means l can be as large as 500, but how about the second dimension? I only need 'A', 'B', 'C', why using 500 then?
Here is another trick (of C/C++), the char type indeed can be used as an int type by default, which value is equal to its ASCII number. And I do not remember the ASCII table of course, but I know that around 300 will be enough to represent all the ASCII characters, including A(65), B(66), C(67)
So I just declare any size large enough to represent 'A','B','C' in the second dimension (that means actually 100 is more than enough, but I just do not think that much and declare 500 as they are almost the same, in terms of order)
so you asked what DP[3][1] means, it means nothing as the I do not need / calculate the second dimension when it is 1. (Or one can think that the state dp(3,1) does not have any physical meaning in our problem)
In fact, I always using 65, 66, 67.
so DP[3][65] means the # of paths of length 3 and ends at char(65) = 'A'
You can do better than the dynamic programming/recursion solution others have posted, for the given triangle and more general graphs. Whenever you are trying to compute the number of walks in a (possibly directed) graph, you can express this in terms of the entries of powers of a transfer matrix. Let M be a matrix whose entry m[i][j] is the number of paths of length 1 from vertex i to vertex j. For a triangle, the transfer matrix is
0 1 1
1 0 1.
1 1 0
Then M^n is a matrix whose i,j entry is the number of paths of length n from vertex i to vertex j. If A corresponds to vertex 1, you want the 1,1 entry of M^n.
Dynamic programming and recursion for the counts of paths of length n in terms of the paths of length n-1 are equivalent to computing M^n with n multiplications, M * M * M * ... * M, which can be fast enough. However, if you want to compute M^100, instead of doing 100 multiplies, you can use repeated squaring: Compute M, M^2, M^4, M^8, M^16, M^32, M^64, and then M^64 * M^32 * M^4. For larger exponents, the number of multiplies is about c log_2(exponent).
Instead of using that a path of length n is made up of a path of length n-1 and then a step of length 1, this uses that a path of length n is made up of a path of length k and then a path of length n-k.
We can solve this with a for loop, although Anonymous described a closed form for it.
function f(n){
var as = 0, abcs = 1;
for (n=n-3; n>0; n--){
as = abcs - as;
abcs *= 2;
}
return 2*(abcs - as);
}
Here's why:
Look at one strand of the decision tree (the other one is symmetrical):
A
B C...
A C
B C A B
A C A B B C A C
B C A B B C A C A C A B B C A B
Num A's Num ABC's (starting with first B on the left)
0 1
1 (1-0) 2
1 (2-1) 4
3 (4-1) 8
5 (8-3) 16
11 (16-5) 32
Cleary, we can't use the strands that end with the A's...
You can write a recursive brute force solution and then memoize it (aka top down dynamic programming). Recursive solutions are more intuitive and easy to come up with. Here is my version:
# search space (we have triangle with nodes)
nodes = ["A", "B", "C"]
#cache # memoize!
def recurse(length, steps):
# if length of the path is n and the last node is "A", then it's
# a valid path and we can count it.
if length == n and ((steps-1)%3 == 0 or (steps+1)%3 == 0):
return 1
# we don't want paths having len > n.
if length > n:
return 0
# from each position, we have two possibilities, either go to next
# node or previous node. Total paths will be sum of both the
# possibilities. We do this recursively.
return recurse(length+1, steps+1) + recurse(length+1, steps-1)

Determining Floating Point Square Root

How do I determine the square root of a floating point number? Is the Newton-Raphson method a good way? I have no hardware square root either. I also have no hardware divide (but I have implemented floating point divide).
If possible, I would prefer to reduce the number of divides as much as possible since they are so expensive.
Also, what should be the initial guess to reduce the total number of iterations???
Thank you so much!
When you use Newton-Raphson to compute a square-root, you actually want to use the iteration to find the reciprocal square root (after which you can simply multiply by the input--with some care for rounding--to produce the square root).
More precisely: we use the function f(x) = x^-2 - n. Clearly, if f(x) = 0, then x = 1/sqrt(n). This gives rise to the newton iteration:
x_(i+1) = x_i - f(x_i)/f'(x_i)
= x_i - (x_i^-2 - n)/(-2x_i^-3)
= x_i + (x_i - nx_i^3)/2
= x_i*(3/2 - 1/2 nx_i^2)
Note that (unlike the iteration for the square root), this iteration for the reciprocal square root involves no divisions, so it is generally much more efficient.
I mentioned in your question on divide that you should look at existing soft-float libraries, rather than re-inventing the wheel. That advice applies here as well. This function has already been implemented in existing soft-float libraries.
Edit: the questioner seems to still be confused, so let's work an example: sqrt(612). 612 is 1.1953125 x 2^9 (or b1.0011001 x 2^9, if you prefer binary). Pull out the even portion of the exponent (9) to write the input as f * 2^(2m), where m is an integer and f is in the range [1,4). Then we will have:
sqrt(n) = sqrt(f * 2^2m) = sqrt(f)*2^m
applying this reduction to our example gives f = 1.1953125 * 2 = 2.390625 (b10.011001) and m = 4. Now do a newton-raphson iteration to find x = 1/sqrt(f), using a starting guess of 0.5 (as I noted in a comment, this guess converges for all f, but you can do significantly better using a linear approximation as an initial guess):
x_0 = 0.5
x_1 = x_0*(3/2 - 1/2 * 2.390625 * x_0^2)
= 0.6005859...
x_2 = x_1*(3/2 - 1/2 * 2.390625 * x_1^2)
= 0.6419342...
x_3 = 0.6467077...
x_4 = 0.6467616...
So even with a (relatively bad) initial guess, we get rapid convergence to the true value of 1/sqrt(f) = 0.6467616600226026.
Now we simply assemble the final result:
sqrt(f) = x_n * f = 1.5461646...
sqrt(n) = sqrt(f) * 2^m = 24.738633...
And check: sqrt(612) = 24.738633...
Obviously, if you want correct rounding, careful analysis needed to ensure that you carry sufficient precision at each stage of the computation. This requires careful bookkeeping, but it isn't rocket science. You simply keep careful error bounds and propagate them through the algorithm.
If you want to correct rounding without explicitly checking a residual, you need to compute sqrt(f) to a precision of 2p + 2 bits (where p is precision of the source and destination type). However, you can also take the strategy of computing sqrt(f) to a little more than p bits, square that value, and adjust the trailing bit by one if necessary (which is often cheaper).
sqrt is nice in that it is a unary function, which makes exhaustive testing for single-precision feasible on commodity hardware.
You can find the OS X soft-float sqrtf function on opensource.apple.com, which uses the algorithm described above (I wrote it, as it happens). It is licensed under the APSL, which may or not be suitable for your needs.
Probably (still) the fastest implementation for finding the inverse square root and the 10 lines of code that I adore the most.
It's based on Newton Approximation, but with a few quirks. There's even a great story around this.
Easiest to implement (you can even implement this in a calculator):
def sqrt(x, TOL=0.000001):
y=1.0
while( abs(x/y -y) > TOL ):
y= (y+x/y)/2.0
return y
This is exactly equal to newton raphson:
y(new) = y - f(y)/f'(y)
f(y) = y^2-x and f'(y) = 2y
Substituting these values:
y(new) = y - (y^2-x)/2y = (y^2+x)/2y = (y+x/y)/2
If division is expensive you should consider: http://en.wikipedia.org/wiki/Shifting_nth-root_algorithm .
Shifting algorithms:
Let us assume you have two numbers a and b such that least significant digit (equal to 1) is larger than b and b has only one bit equal to (eg. a=1000 and b=10). Let s(b) = log_2(b) (which is just the location of bit valued 1 in b).
Assume we already know the value of a^2. Now (a+b)^2 = a^2 + 2ab + b^2. a^2 is already known, 2ab: shift a by s(b)+1, b^2: shift b by s(b).
Algorithm:
Initialize a such that a has only one bit equal to one and a^2<= n < (2*a)^2.
Let q=s(a).
b=a
sqra = a*a
For i = q-1 to -10 (or whatever significance you want):
b=b/2
sqrab = sqra + 2ab + b^2
if sqrab > n:
continue
sqra = sqrab
a=a+b
n=612
a=10000 (16)
sqra = 256
Iteration 1:
b=01000 (8)
sqrab = (a+b)^2 = 24^2 = 576
sqrab < n => a=a+b = 24
Iteration 2:
b = 4
sqrab = (a+b)^2 = 28^2 = 784
sqrab > n => a=a
Iteration 3:
b = 2
sqrab = (a+b)^2 = 26^2 = 676
sqrab > n => a=a
Iteration 4:
b = 1
sqrab = (a+b)^2 = 25^2 = 625
sqrab > n => a=a
Iteration 5:
b = 0.5
sqrab = (a+b)^2 = 24.5^2 = 600.25
sqrab < n => a=a+b = 24.5
Iteration 6:
b = 0.25
sqrab = (a+b)^2 = 24.75^2 = 612.5625
sqrab < n => a=a
Iteration 7:
b = 0.125
sqrab = (a+b)^2 = 24.625^2 = 606.390625
sqrab < n => a=a+b = 24.625
and so on.
A good approximation to square root on the range [1,4) is
def sqrt(x):
y = x*-0.000267
y = x*(0.004686+y)
y = x*(-0.034810+y)
y = x*(0.144780+y)
y = x*(-0.387893+y)
y = x*(0.958108+y)
return y+0.315413
Normalise your floating point number so the mantissa is in the range [1,4), use the above algorithm on it, and then divide the exponent by 2. No floating point divisions anywhere.
With the same CPU time budget you can probably do much better, but that seems like a good starting point.

Find the minimum number of operations required to compute a number using a specified range of numbers

Let me start with an example -
I have a range of numbers from 1 to 9. And let's say the target number that I want is 29.
In this case the minimum number of operations that are required would be (9*3)+2 = 2 operations. Similarly for 18 the minimum number of operations is 1 (9*2=18).
I can use any of the 4 arithmetic operators - +, -, / and *.
How can I programmatically find out the minimum number of operations required?
Thanks in advance for any help provided.
clarification: integers only, no decimals allowed mid-calculation. i.e. the following is not valid (from comments below): ((9/2) + 1) * 4 == 22
I must admit I didn't think about this thoroughly, but for my purpose it doesn't matter if decimal numbers appear mid-calculation. ((9/2) + 1) * 4 == 22 is valid. Sorry for the confusion.
For the special case where set Y = [1..9] and n > 0:
n <= 9 : 0 operations
n <=18 : 1 operation (+)
otherwise : Remove any divisor found in Y. If this is not enough, do a recursion on the remainder for all offsets -9 .. +9. Offset 0 can be skipped as it has already been tried.
Notice how division is not needed in this case. For other Y this does not hold.
This algorithm is exponential in log(n). The exact analysis is a job for somebody with more knowledge about algebra than I.
For more speed, add pruning to eliminate some of the search for larger numbers.
Sample code:
def findop(n, maxlen=9999):
# Return a short postfix list of numbers and operations
# Simple solution to small numbers
if n<=9: return [n]
if n<=18: return [9,n-9,'+']
# Find direct multiply
x = divlist(n)
if len(x) > 1:
mults = len(x)-1
x[-1:] = findop(x[-1], maxlen-2*mults)
x.extend(['*'] * mults)
return x
shortest = 0
for o in range(1,10) + range(-1,-10,-1):
x = divlist(n-o)
if len(x) == 1: continue
mults = len(x)-1
# We spent len(divlist) + mults + 2 fields for offset.
# The last number is expanded by the recursion, so it doesn't count.
recursion_maxlen = maxlen - len(x) - mults - 2 + 1
if recursion_maxlen < 1: continue
x[-1:] = findop(x[-1], recursion_maxlen)
x.extend(['*'] * mults)
if o > 0:
x.extend([o, '+'])
else:
x.extend([-o, '-'])
if shortest == 0 or len(x) < shortest:
shortest = len(x)
maxlen = shortest - 1
solution = x[:]
if shortest == 0:
# Fake solution, it will be discarded
return '#' * (maxlen+1)
return solution
def divlist(n):
l = []
for d in range(9,1,-1):
while n%d == 0:
l.append(d)
n = n/d
if n>1: l.append(n)
return l
The basic idea is to test all possibilities with k operations, for k starting from 0. Imagine you create a tree of height k that branches for every possible new operation with operand (4*9 branches per level). You need to traverse and evaluate the leaves of the tree for each k before moving to the next k.
I didn't test this pseudo-code:
for every k from 0 to infinity
for every n from 1 to 9
if compute(n,0,k):
return k
boolean compute(n,j,k):
if (j == k):
return (n == target)
else:
for each operator in {+,-,*,/}:
for every i from 1 to 9:
if compute((n operator i),j+1,k):
return true
return false
It doesn't take into account arithmetic operators precedence and braces, that would require some rework.
Really cool question :)
Notice that you can start from the end! From your example (9*3)+2 = 29 is equivalent to saying (29-2)/3=9. That way we can avoid the double loop in cyborg's answer. This suggests the following algorithm for set Y and result r:
nextleaves = {r}
nops = 0
while(true):
nops = nops+1
leaves = nextleaves
nextleaves = {}
for leaf in leaves:
for y in Y:
if (leaf+y) or (leaf-y) or (leaf*y) or (leaf/y) is in X:
return(nops)
else:
add (leaf+y) and (leaf-y) and (leaf*y) and (leaf/y) to nextleaves
This is the basic idea, performance can be certainly be improved, for instance by avoiding "backtracks", such as r+a-a or r*a*b/a.
I guess my idea is similar to the one of Peer Sommerlund:
For big numbers, you advance fast, by multiplication with big ciphers.
Is Y=29 prime? If not, divide it by the maximum divider of (2 to 9).
Else you could subtract a number, to reach a dividable number. 27 is fine, since it is dividable by 9, so
(29-2)/9=3 =>
3*9+2 = 29
So maybe - I didn't think about this to the end: Search the next divisible by 9 number below Y. If you don't reach a number which is a digit, repeat.
The formula is the steps reversed.
(I'll try it for some numbers. :) )
I tried with 2551, which is
echo $((((3*9+4)*9+4)*9+4))
But I didn't test every intermediate result whether it is prime.
But
echo $((8*8*8*5-9))
is 2 operations less. Maybe I can investigate this later.

Select k random elements from a list whose elements have weights

Selecting without any weights (equal probabilities) is beautifully described here.
I was wondering if there is a way to convert this approach to a weighted one.
I am also interested in other approaches as well.
Update: Sampling without replacement
If the sampling is with replacement, you can use this algorithm (implemented here in Python):
import random
items = [(10, "low"),
(100, "mid"),
(890, "large")]
def weighted_sample(items, n):
total = float(sum(w for w, v in items))
i = 0
w, v = items[0]
while n:
x = total * (1 - random.random() ** (1.0 / n))
total -= x
while x > w:
x -= w
i += 1
w, v = items[i]
w -= x
yield v
n -= 1
This is O(n + m) where m is the number of items.
Why does this work? It is based on the following algorithm:
def n_random_numbers_decreasing(v, n):
"""Like reversed(sorted(v * random() for i in range(n))),
but faster because we avoid sorting."""
while n:
v *= random.random() ** (1.0 / n)
yield v
n -= 1
The function weighted_sample is just this algorithm fused with a walk of the items list to pick out the items selected by those random numbers.
This in turn works because the probability that n random numbers 0..v will all happen to be less than z is P = (z/v)n. Solve for z, and you get z = vP1/n. Substituting a random number for P picks the largest number with the correct distribution; and we can just repeat the process to select all the other numbers.
If the sampling is without replacement, you can put all the items into a binary heap, where each node caches the total of the weights of all items in that subheap. Building the heap is O(m). Selecting a random item from the heap, respecting the weights, is O(log m). Removing that item and updating the cached totals is also O(log m). So you can pick n items in O(m + n log m) time.
(Note: "weight" here means that every time an element is selected, the remaining possibilities are chosen with probability proportional to their weights. It does not mean that elements appear in the output with a likelihood proportional to their weights.)
Here's an implementation of that, plentifully commented:
import random
class Node:
# Each node in the heap has a weight, value, and total weight.
# The total weight, self.tw, is self.w plus the weight of any children.
__slots__ = ['w', 'v', 'tw']
def __init__(self, w, v, tw):
self.w, self.v, self.tw = w, v, tw
def rws_heap(items):
# h is the heap. It's like a binary tree that lives in an array.
# It has a Node for each pair in `items`. h[1] is the root. Each
# other Node h[i] has a parent at h[i>>1]. Each node has up to 2
# children, h[i<<1] and h[(i<<1)+1]. To get this nice simple
# arithmetic, we have to leave h[0] vacant.
h = [None] # leave h[0] vacant
for w, v in items:
h.append(Node(w, v, w))
for i in range(len(h) - 1, 1, -1): # total up the tws
h[i>>1].tw += h[i].tw # add h[i]'s total to its parent
return h
def rws_heap_pop(h):
gas = h[1].tw * random.random() # start with a random amount of gas
i = 1 # start driving at the root
while gas >= h[i].w: # while we have enough gas to get past node i:
gas -= h[i].w # drive past node i
i <<= 1 # move to first child
if gas >= h[i].tw: # if we have enough gas:
gas -= h[i].tw # drive past first child and descendants
i += 1 # move to second child
w = h[i].w # out of gas! h[i] is the selected node.
v = h[i].v
h[i].w = 0 # make sure this node isn't chosen again
while i: # fix up total weights
h[i].tw -= w
i >>= 1
return v
def random_weighted_sample_no_replacement(items, n):
heap = rws_heap(items) # just make a heap...
for i in range(n):
yield rws_heap_pop(heap) # and pop n items off it.
If the sampling is with replacement, use the roulette-wheel selection technique (often used in genetic algorithms):
sort the weights
compute the cumulative weights
pick a random number in [0,1]*totalWeight
find the interval in which this number falls into
select the elements with the corresponding interval
repeat k times
If the sampling is without replacement, you can adapt the above technique by removing the selected element from the list after each iteration, then re-normalizing the weights so that their sum is 1 (valid probability distribution function)
I know this is a very old question, but I think there's a neat trick to do this in O(n) time if you apply a little math!
The exponential distribution has two very useful properties.
Given n samples from different exponential distributions with different rate parameters, the probability that a given sample is the minimum is equal to its rate parameter divided by the sum of all rate parameters.
It is "memoryless". So if you already know the minimum, then the probability that any of the remaining elements is the 2nd-to-min is the same as the probability that if the true min were removed (and never generated), that element would have been the new min. This seems obvious, but I think because of some conditional probability issues, it might not be true of other distributions.
Using fact 1, we know that choosing a single element can be done by generating these exponential distribution samples with rate parameter equal to the weight, and then choosing the one with minimum value.
Using fact 2, we know that we don't have to re-generate the exponential samples. Instead, just generate one for each element, and take the k elements with lowest samples.
Finding the lowest k can be done in O(n). Use the Quickselect algorithm to find the k-th element, then simply take another pass through all elements and output all lower than the k-th.
A useful note: if you don't have immediate access to a library to generate exponential distribution samples, it can be easily done by: -ln(rand())/weight
I've done this in Ruby
https://github.com/fl00r/pickup
require 'pickup'
pond = {
"selmon" => 1,
"carp" => 4,
"crucian" => 3,
"herring" => 6,
"sturgeon" => 8,
"gudgeon" => 10,
"minnow" => 20
}
pickup = Pickup.new(pond, uniq: true)
pickup.pick(3)
#=> [ "gudgeon", "herring", "minnow" ]
pickup.pick
#=> "herring"
pickup.pick
#=> "gudgeon"
pickup.pick
#=> "sturgeon"
If you want to generate large arrays of random integers with replacement, you can use piecewise linear interpolation. For example, using NumPy/SciPy:
import numpy
import scipy.interpolate
def weighted_randint(weights, size=None):
"""Given an n-element vector of weights, randomly sample
integers up to n with probabilities proportional to weights"""
n = weights.size
# normalize so that the weights sum to unity
weights = weights / numpy.linalg.norm(weights, 1)
# cumulative sum of weights
cumulative_weights = weights.cumsum()
# piecewise-linear interpolating function whose domain is
# the unit interval and whose range is the integers up to n
f = scipy.interpolate.interp1d(
numpy.hstack((0.0, weights)),
numpy.arange(n + 1), kind='linear')
return f(numpy.random.random(size=size)).astype(int)
This is not effective if you want to sample without replacement.
Here's a Go implementation from geodns:
package foo
import (
"log"
"math/rand"
)
type server struct {
Weight int
data interface{}
}
func foo(servers []server) {
// servers list is already sorted by the Weight attribute
// number of items to pick
max := 4
result := make([]server, max)
sum := 0
for _, r := range servers {
sum += r.Weight
}
for si := 0; si < max; si++ {
n := rand.Intn(sum + 1)
s := 0
for i := range servers {
s += int(servers[i].Weight)
if s >= n {
log.Println("Picked record", i, servers[i])
sum -= servers[i].Weight
result[si] = servers[i]
// remove the server from the list
servers = append(servers[:i], servers[i+1:]...)
break
}
}
}
return result
}
If you want to pick x elements from a weighted set without replacement such that elements are chosen with a probability proportional to their weights:
import random
def weighted_choose_subset(weighted_set, count):
"""Return a random sample of count elements from a weighted set.
weighted_set should be a sequence of tuples of the form
(item, weight), for example: [('a', 1), ('b', 2), ('c', 3)]
Each element from weighted_set shows up at most once in the
result, and the relative likelihood of two particular elements
showing up is equal to the ratio of their weights.
This works as follows:
1.) Line up the items along the number line from [0, the sum
of all weights) such that each item occupies a segment of
length equal to its weight.
2.) Randomly pick a number "start" in the range [0, total
weight / count).
3.) Find all the points "start + n/count" (for all integers n
such that the point is within our segments) and yield the set
containing the items marked by those points.
Note that this implementation may not return each possible
subset. For example, with the input ([('a': 1), ('b': 1),
('c': 1), ('d': 1)], 2), it may only produce the sets ['a',
'c'] and ['b', 'd'], but it will do so such that the weights
are respected.
This implementation only works for nonnegative integral
weights. The highest weight in the input set must be less
than the total weight divided by the count; otherwise it would
be impossible to respect the weights while never returning
that element more than once per invocation.
"""
if count == 0:
return []
total_weight = 0
max_weight = 0
borders = []
for item, weight in weighted_set:
if weight < 0:
raise RuntimeError("All weights must be positive integers")
# Scale up weights so dividing total_weight / count doesn't truncate:
weight *= count
total_weight += weight
borders.append(total_weight)
max_weight = max(max_weight, weight)
step = int(total_weight / count)
if max_weight > step:
raise RuntimeError(
"Each weight must be less than total weight / count")
next_stop = random.randint(0, step - 1)
results = []
current = 0
for i in range(count):
while borders[current] <= next_stop:
current += 1
results.append(weighted_set[current][0])
next_stop += step
return results
In the question you linked to, Kyle's solution would work with a trivial generalization.
Scan the list and sum the total weights. Then the probability to choose an element should be:
1 - (1 - (#needed/(weight left)))/(weight at n). After visiting a node, subtract it's weight from the total. Also, if you need n and have n left, you have to stop explicitly.
You can check that with everything having weight 1, this simplifies to kyle's solution.
Edited: (had to rethink what twice as likely meant)
This one does exactly that with O(n) and no excess memory usage. I believe this is a clever and efficient solution easy to port to any language. The first two lines are just to populate sample data in Drupal.
function getNrandomGuysWithWeight($numitems){
$q = db_query('SELECT id, weight FROM theTableWithTheData');
$q = $q->fetchAll();
$accum = 0;
foreach($q as $r){
$accum += $r->weight;
$r->weight = $accum;
}
$out = array();
while(count($out) < $numitems && count($q)){
$n = rand(0,$accum);
$lessaccum = NULL;
$prevaccum = 0;
$idxrm = 0;
foreach($q as $i=>$r){
if(($lessaccum == NULL) && ($n <= $r->weight)){
$out[] = $r->id;
$lessaccum = $r->weight- $prevaccum;
$accum -= $lessaccum;
$idxrm = $i;
}else if($lessaccum){
$r->weight -= $lessaccum;
}
$prevaccum = $r->weight;
}
unset($q[$idxrm]);
}
return $out;
}
I putting here a simple solution for picking 1 item, you can easily expand it for k items (Java style):
double random = Math.random();
double sum = 0;
for (int i = 0; i < items.length; i++) {
val = items[i];
sum += val.getValue();
if (sum > random) {
selected = val;
break;
}
}
I have implemented an algorithm similar to Jason Orendorff's idea in Rust here. My version additionally supports bulk operations: insert and remove (when you want to remove a bunch of items given by their ids, not through the weighted selection path) from the data structure in O(m + log n) time where m is the number of items to remove and n the number of items in stored.
Sampling wihout replacement with recursion - elegant and very short solution in c#
//how many ways we can choose 4 out of 60 students, so that every time we choose different 4
class Program
{
static void Main(string[] args)
{
int group = 60;
int studentsToChoose = 4;
Console.WriteLine(FindNumberOfStudents(studentsToChoose, group));
}
private static int FindNumberOfStudents(int studentsToChoose, int group)
{
if (studentsToChoose == group || studentsToChoose == 0)
return 1;
return FindNumberOfStudents(studentsToChoose, group - 1) + FindNumberOfStudents(studentsToChoose - 1, group - 1);
}
}
I just spent a few hours trying to get behind the algorithms underlying sampling without replacement out there and this topic is more complex than I initially thought. That's exciting! For the benefit of a future readers (have a good day!) I document my insights here including a ready to use function which respects the given inclusion probabilities further below. A nice and quick mathematical overview of the various methods can be found here: Tillé: Algorithms of sampling with equal or unequal probabilities. For example Jason's method can be found on page 46. The caveat with his method is that the weights are not proportional to the inclusion probabilities as also noted in the document. Actually, the i-th inclusion probabilities can be recursively computed as follows:
def inclusion_probability(i, weights, k):
"""
Computes the inclusion probability of the i-th element
in a randomly sampled k-tuple using Jason's algorithm
(see https://stackoverflow.com/a/2149533/7729124)
"""
if k <= 0: return 0
cum_p = 0
for j, weight in enumerate(weights):
# compute the probability of j being selected considering the weights
p = weight / sum(weights)
if i == j:
# if this is the target element, we don't have to go deeper,
# since we know that i is included
cum_p += p
else:
# if this is not the target element, than we compute the conditional
# inclusion probability of i under the constraint that j is included
cond_i = i if i < j else i-1
cond_weights = weights[:j] + weights[j+1:]
cond_p = inclusion_probability(cond_i, cond_weights, k-1)
cum_p += p * cond_p
return cum_p
And we can check the validity of the function above by comparing
In : for i in range(3): print(i, inclusion_probability(i, [1,2,3], 2))
0 0.41666666666666663
1 0.7333333333333333
2 0.85
to
In : import collections, itertools
In : sample_tester = lambda f: collections.Counter(itertools.chain(*(f() for _ in range(10000))))
In : sample_tester(lambda: random_weighted_sample_no_replacement([(1,'a'),(2,'b'),(3,'c')],2))
Out: Counter({'a': 4198, 'b': 7268, 'c': 8534})
One way - also suggested in the document above - to specify the inclusion probabilities is to compute the weights from them. The whole complexity of the question at hand stems from the fact that one cannot do that directly since one basically has to invert the recursion formula, symbolically I claim this is impossible. Numerically it can be done using all kind of methods, e.g. Newton's method. However the complexity of inverting the Jacobian using plain Python becomes unbearable quickly, I really recommend looking into numpy.random.choice in this case.
Luckily there is method using plain Python which might or might not be sufficiently performant for your purposes, it works great if there aren't that many different weights. You can find the algorithm on page 75&76. It works by splitting up the sampling process into parts with the same inclusion probabilities, i.e. we can use random.sample again! I am not going to explain the principle here since the basics are nicely presented on page 69. Here is the code with hopefully a sufficient amount of comments:
def sample_no_replacement_exact(items, k, best_effort=False, random_=None, ε=1e-9):
"""
Returns a random sample of k elements from items, where items is a list of
tuples (weight, element). The inclusion probability of an element in the
final sample is given by
k * weight / sum(weights).
Note that the function raises if a inclusion probability cannot be
satisfied, e.g the following call is obviously illegal:
sample_no_replacement_exact([(1,'a'),(2,'b')],2)
Since selecting two elements means selecting both all the time,
'b' cannot be selected twice as often as 'a'. In general it can be hard to
spot if the weights are illegal and the function does *not* always raise
an exception in that case. To remedy the situation you can pass
best_effort=True which redistributes the inclusion probability mass
if necessary. Note that the inclusion probabilities will change
if deemed necessary.
The algorithm is based on the splitting procedure on page 75/76 in:
http://www.eustat.eus/productosServicios/52.1_Unequal_prob_sampling.pdf
Additional information can be found here:
https://stackoverflow.com/questions/2140787/
:param items: list of tuples of type weight,element
:param k: length of resulting sample
:param best_effort: fix inclusion probabilities if necessary,
(optional, defaults to False)
:param random_: random module to use (optional, defaults to the
standard random module)
:param ε: fuzziness parameter when testing for zero in the context
of floating point arithmetic (optional, defaults to 1e-9)
:return: random sample set of size k
:exception: throws ValueError in case of bad parameters,
throws AssertionError in case of algorithmic impossibilities
"""
# random_ defaults to the random submodule
if not random_:
random_ = random
# special case empty return set
if k <= 0:
return set()
if k > len(items):
raise ValueError("resulting tuple length exceeds number of elements (k > n)")
# sort items by weight
items = sorted(items, key=lambda item: item[0])
# extract the weights and elements
weights, elements = list(zip(*items))
# compute the inclusion probabilities (short: π) of the elements
scaling_factor = k / sum(weights)
π = [scaling_factor * weight for weight in weights]
# in case of best_effort: if a inclusion probability exceeds 1,
# try to rebalance the probabilities such that:
# a) no probability exceeds 1,
# b) the probabilities still sum to k, and
# c) the probability masses flow from top to bottom:
# [0.2, 0.3, 1.5] -> [0.2, 0.8, 1]
# (remember that π is sorted)
if best_effort and π[-1] > 1 + ε:
# probability mass we still we have to distribute
debt = 0.
for i in reversed(range(len(π))):
if π[i] > 1.:
# an 'offender', take away excess
debt += π[i] - 1.
π[i] = 1.
else:
# case π[i] < 1, i.e. 'save' element
# maximum we can transfer from debt to π[i] and still not
# exceed 1 is computed by the minimum of:
# a) 1 - π[i], and
# b) debt
max_transfer = min(debt, 1. - π[i])
debt -= max_transfer
π[i] += max_transfer
assert debt < ε, "best effort rebalancing failed (impossible)"
# make sure we are talking about probabilities
if any(not (0 - ε <= π_i <= 1 + ε) for π_i in π):
raise ValueError("inclusion probabilities not satisfiable: {}" \
.format(list(zip(π, elements))))
# special case equal probabilities
# (up to fuzziness parameter, remember that π is sorted)
if π[-1] < π[0] + ε:
return set(random_.sample(elements, k))
# compute the two possible lambda values, see formula 7 on page 75
# (remember that π is sorted)
λ1 = π[0] * len(π) / k
λ2 = (1 - π[-1]) * len(π) / (len(π) - k)
λ = min(λ1, λ2)
# there are two cases now, see also page 69
# CASE 1
# with probability λ we are in the equal probability case
# where all elements have the same inclusion probability
if random_.random() < λ:
return set(random_.sample(elements, k))
# CASE 2:
# with probability 1-λ we are in the case of a new sample without
# replacement problem which is strictly simpler,
# it has the following new probabilities (see page 75, π^{(2)}):
new_π = [
(π_i - λ * k / len(π))
/
(1 - λ)
for π_i in π
]
new_items = list(zip(new_π, elements))
# the first few probabilities might be 0, remove them
# NOTE: we make sure that floating point issues do not arise
# by using the fuzziness parameter
while new_items and new_items[0][0] < ε:
new_items = new_items[1:]
# the last few probabilities might be 1, remove them and mark them as selected
# NOTE: we make sure that floating point issues do not arise
# by using the fuzziness parameter
selected_elements = set()
while new_items and new_items[-1][0] > 1 - ε:
selected_elements.add(new_items[-1][1])
new_items = new_items[:-1]
# the algorithm reduces the length of the sample problem,
# it is guaranteed that:
# if λ = λ1: the first item has probability 0
# if λ = λ2: the last item has probability 1
assert len(new_items) < len(items), "problem was not simplified (impossible)"
# recursive call with the simpler sample problem
# NOTE: we have to make sure that the selected elements are included
return sample_no_replacement_exact(
new_items,
k - len(selected_elements),
best_effort=best_effort,
random_=random_,
ε=ε
) | selected_elements
Example:
In : sample_no_replacement_exact([(1,'a'),(2,'b'),(3,'c')],2)
Out: {'b', 'c'}
In : import collections, itertools
In : sample_tester = lambda f: collections.Counter(itertools.chain(*(f() for _ in range(10000))))
In : sample_tester(lambda: sample_no_replacement_exact([(1,'a'),(2,'b'),(3,'c'),(4,'d')],2))
Out: Counter({'a': 2048, 'b': 4051, 'c': 5979, 'd': 7922})
The weights sum up to 10, hence the inclusion probabilities compute to: a → 20%, b → 40%, c → 60%, d → 80%. (Sum: 200% = k.) It works!
Just one word of caution for the productive use of this function, it can be very hard to spot illegal inputs for the weights. An obvious illegal example is
In: sample_no_replacement_exact([(1,'a'),(2,'b')],2)
ValueError: inclusion probabilities not satisfiable: [(0.6666666666666666, 'a'), (1.3333333333333333, 'b')]
b cannot appear twice as often as a since both have to be always be selected. There are more subtle examples. To avoid an exception in production just use best_effort=True, which rebalances the inclusion probability mass such that we have always a valid distribution. Obviously this might change the inclusion probabilities.
I used a associative map (weight,object). for example:
{
(10,"low"),
(100,"mid"),
(10000,"large")
}
total=10110
peek a random number between 0 and 'total' and iterate over the keys until this number fits in a given range.

Resources